HEADER ISOMERASE 25-FEB-14 4POD TITLE STRUCTURE OF TRIOSEPHOSPHATE ISOMERASE I170V MUTANT HUMAN ENZYME. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TIM, TRIOSE-PHOSPHATE ISOMERASE; COMPND 5 EC: 5.3.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TPI, TPI1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON+RILP; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PLC3 KEYWDS TIM ALPHA/BETA BARREL, TIM BARREL, ISOMERASE, GLYCOLYTIC EXPDTA X-RAY DIFFRACTION AUTHOR C.G.AMRICH,A.A.ASLAM,A.HEROUX,A.P.VANDEMARK REVDAT 2 20-SEP-23 4POD 1 REMARK SEQADV LINK REVDAT 1 14-JAN-15 4POD 0 JRNL AUTH B.P.ROLAND,C.G.AMRICH,C.J.KAMMERER,K.A.STUCHUL,S.B.LARSEN, JRNL AUTH 2 S.RODE,A.A.ASLAM,A.HEROUX,R.WETZEL,A.P.VANDEMARK, JRNL AUTH 3 M.J.PALLADINO JRNL TITL TRIOSEPHOSPHATE ISOMERASE I170V ALTERS CATALYTIC SITE, JRNL TITL 2 ENHANCES STABILITY AND INDUCES PATHOLOGY IN A DROSOPHILA JRNL TITL 3 MODEL OF TPI DEFICIENCY. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1852 61 2015 JRNL REFN ISSN 0006-3002 JRNL PMID 25463631 JRNL DOI 10.1016/J.BBADIS.2014.10.010 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 27688 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.330 REMARK 3 FREE R VALUE TEST SET COUNT : 1200 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.4950 - 4.1382 0.99 3268 120 0.1467 0.2001 REMARK 3 2 4.1382 - 3.2852 1.00 3101 180 0.1484 0.1884 REMARK 3 3 3.2852 - 2.8701 1.00 3101 120 0.1733 0.1977 REMARK 3 4 2.8701 - 2.6077 1.00 3106 120 0.1789 0.2048 REMARK 3 5 2.6077 - 2.4208 1.00 3005 180 0.1806 0.2493 REMARK 3 6 2.4208 - 2.2781 1.00 3046 120 0.1838 0.2229 REMARK 3 7 2.2781 - 2.1640 0.99 3047 120 0.2066 0.2496 REMARK 3 8 2.1640 - 2.0698 0.90 2729 120 0.2308 0.2541 REMARK 3 9 2.0698 - 1.9902 0.68 2067 119 0.2700 0.2994 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3766 REMARK 3 ANGLE : 0.779 5102 REMARK 3 CHIRALITY : 0.043 578 REMARK 3 PLANARITY : 0.003 660 REMARK 3 DIHEDRAL : 13.528 1361 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 4:43 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.862 11.608 -15.321 REMARK 3 T TENSOR REMARK 3 T11: 0.3309 T22: 0.3599 REMARK 3 T33: 0.2782 T12: 0.0330 REMARK 3 T13: -0.0488 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 0.1590 L22: 0.3989 REMARK 3 L33: -0.0377 L12: 0.1875 REMARK 3 L13: 0.0456 L23: -0.0409 REMARK 3 S TENSOR REMARK 3 S11: -0.0293 S12: 0.3794 S13: -0.0627 REMARK 3 S21: -0.1997 S22: 0.0699 S23: 0.1060 REMARK 3 S31: -0.0647 S32: -0.2153 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 44:118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.310 7.805 -7.027 REMARK 3 T TENSOR REMARK 3 T11: 0.2531 T22: 0.2593 REMARK 3 T33: 0.2186 T12: -0.0138 REMARK 3 T13: 0.0120 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.8534 L22: 0.7802 REMARK 3 L33: 0.1119 L12: -0.2693 REMARK 3 L13: -0.2150 L23: -0.0578 REMARK 3 S TENSOR REMARK 3 S11: 0.0051 S12: 0.0129 S13: -0.0343 REMARK 3 S21: -0.0281 S22: -0.0058 S23: -0.0452 REMARK 3 S31: -0.0295 S32: 0.0082 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 119:152 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.030 26.003 -0.046 REMARK 3 T TENSOR REMARK 3 T11: 0.2761 T22: 0.3097 REMARK 3 T33: 0.3416 T12: -0.0248 REMARK 3 T13: 0.0266 T23: -0.0510 REMARK 3 L TENSOR REMARK 3 L11: 0.9594 L22: 0.2090 REMARK 3 L33: 0.0326 L12: 0.3794 REMARK 3 L13: 0.0327 L23: -0.0292 REMARK 3 S TENSOR REMARK 3 S11: 0.0750 S12: -0.2521 S13: 0.2593 REMARK 3 S21: -0.1105 S22: 0.0157 S23: 0.0482 REMARK 3 S31: -0.1018 S32: 0.1812 S33: 0.0004 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 153:176 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.482 24.919 -5.072 REMARK 3 T TENSOR REMARK 3 T11: 0.2140 T22: 0.2555 REMARK 3 T33: 0.2398 T12: -0.0204 REMARK 3 T13: 0.0072 T23: 0.0291 REMARK 3 L TENSOR REMARK 3 L11: 0.1381 L22: 0.3025 REMARK 3 L33: 0.3400 L12: 0.2180 REMARK 3 L13: 0.0192 L23: -0.0751 REMARK 3 S TENSOR REMARK 3 S11: -0.0037 S12: 0.0735 S13: 0.1785 REMARK 3 S21: -0.0557 S22: 0.0035 S23: -0.0363 REMARK 3 S31: -0.0533 S32: 0.0759 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 177:215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.105 30.621 -10.791 REMARK 3 T TENSOR REMARK 3 T11: 0.2965 T22: 0.3067 REMARK 3 T33: 0.3579 T12: -0.0007 REMARK 3 T13: -0.0197 T23: 0.0371 REMARK 3 L TENSOR REMARK 3 L11: 0.1923 L22: 0.2445 REMARK 3 L33: 0.3173 L12: 0.1677 REMARK 3 L13: 0.1407 L23: 0.3762 REMARK 3 S TENSOR REMARK 3 S11: -0.2330 S12: 0.2382 S13: 0.4249 REMARK 3 S21: -0.0786 S22: 0.0913 S23: 0.0991 REMARK 3 S31: 0.0603 S32: -0.0288 S33: -0.0003 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 216:247 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.516 23.518 -14.763 REMARK 3 T TENSOR REMARK 3 T11: 0.3017 T22: 0.3408 REMARK 3 T33: 0.3068 T12: 0.0278 REMARK 3 T13: -0.0426 T23: 0.0393 REMARK 3 L TENSOR REMARK 3 L11: 0.2073 L22: 0.1805 REMARK 3 L33: 0.0291 L12: -0.1295 REMARK 3 L13: 0.0410 L23: 0.0489 REMARK 3 S TENSOR REMARK 3 S11: 0.0993 S12: 0.1588 S13: 0.1490 REMARK 3 S21: -0.0260 S22: -0.1312 S23: 0.0133 REMARK 3 S31: 0.0135 S32: 0.1188 S33: -0.0002 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN B AND RESID 3:16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.130 -13.869 2.595 REMARK 3 T TENSOR REMARK 3 T11: 0.3375 T22: 0.2925 REMARK 3 T33: 0.3625 T12: -0.0138 REMARK 3 T13: 0.0574 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.0623 L22: -0.0117 REMARK 3 L33: 0.2248 L12: 0.0103 REMARK 3 L13: -0.2252 L23: 0.0204 REMARK 3 S TENSOR REMARK 3 S11: -0.2004 S12: 0.0945 S13: -0.2926 REMARK 3 S21: 0.0922 S22: 0.0669 S23: -0.2171 REMARK 3 S31: 0.1978 S32: -0.1134 S33: 0.0002 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN B AND RESID 17:30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.357 -15.650 -11.045 REMARK 3 T TENSOR REMARK 3 T11: 0.4253 T22: 0.3185 REMARK 3 T33: 0.3808 T12: 0.0092 REMARK 3 T13: 0.0183 T23: -0.0811 REMARK 3 L TENSOR REMARK 3 L11: 0.0645 L22: 0.0783 REMARK 3 L33: 0.0851 L12: -0.0628 REMARK 3 L13: -0.0169 L23: 0.0622 REMARK 3 S TENSOR REMARK 3 S11: -0.0820 S12: 0.0672 S13: -0.2861 REMARK 3 S21: -0.3163 S22: -0.0624 S23: 0.0197 REMARK 3 S31: 0.4276 S32: 0.0500 S33: -0.0006 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN B AND RESID 31:43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.334 -20.009 -0.362 REMARK 3 T TENSOR REMARK 3 T11: 0.4031 T22: 0.3117 REMARK 3 T33: 0.5099 T12: -0.0001 REMARK 3 T13: 0.1165 T23: -0.1008 REMARK 3 L TENSOR REMARK 3 L11: 0.3386 L22: 0.0053 REMARK 3 L33: 0.1440 L12: 0.0310 REMARK 3 L13: 0.2173 L23: 0.0158 REMARK 3 S TENSOR REMARK 3 S11: -0.0938 S12: 0.2750 S13: -0.4949 REMARK 3 S21: -0.2638 S22: -0.1956 S23: -0.2574 REMARK 3 S31: 0.3331 S32: -0.2763 S33: -0.0878 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN B AND RESID 44:66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.580 -9.536 -4.848 REMARK 3 T TENSOR REMARK 3 T11: 0.3051 T22: 0.2484 REMARK 3 T33: 0.2836 T12: -0.0357 REMARK 3 T13: 0.0234 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.2962 L22: 0.3151 REMARK 3 L33: 0.4308 L12: 0.0436 REMARK 3 L13: -0.3469 L23: -0.2278 REMARK 3 S TENSOR REMARK 3 S11: -0.0660 S12: -0.1828 S13: -0.1673 REMARK 3 S21: -0.0987 S22: -0.0203 S23: 0.0251 REMARK 3 S31: 0.1293 S32: -0.2866 S33: -0.0001 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: ( CHAIN B AND RESID 67:117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.658 -0.369 6.506 REMARK 3 T TENSOR REMARK 3 T11: 0.2514 T22: 0.2418 REMARK 3 T33: 0.2396 T12: -0.0080 REMARK 3 T13: 0.0213 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.1174 L22: 0.5433 REMARK 3 L33: 0.1391 L12: 0.1225 REMARK 3 L13: -0.0487 L23: -0.2941 REMARK 3 S TENSOR REMARK 3 S11: -0.0094 S12: -0.0847 S13: -0.0502 REMARK 3 S21: 0.0651 S22: -0.0142 S23: 0.0402 REMARK 3 S31: -0.1000 S32: -0.0131 S33: -0.0000 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: ( CHAIN B AND RESID 118:137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.893 -6.067 17.360 REMARK 3 T TENSOR REMARK 3 T11: 0.3101 T22: 0.3905 REMARK 3 T33: 0.3037 T12: -0.0231 REMARK 3 T13: -0.0061 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.4660 L22: 0.2280 REMARK 3 L33: 0.7138 L12: 0.2668 REMARK 3 L13: -0.2146 L23: -0.3024 REMARK 3 S TENSOR REMARK 3 S11: -0.1242 S12: -0.2020 S13: 0.5850 REMARK 3 S21: 0.0409 S22: -0.2304 S23: 0.2099 REMARK 3 S31: -0.0643 S32: 0.2595 S33: -0.0100 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: ( CHAIN B AND RESID 138:152 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.275 -5.857 23.166 REMARK 3 T TENSOR REMARK 3 T11: 0.4093 T22: 0.4719 REMARK 3 T33: 0.3718 T12: -0.0018 REMARK 3 T13: 0.0465 T23: 0.0703 REMARK 3 L TENSOR REMARK 3 L11: 0.0531 L22: 0.0941 REMARK 3 L33: 0.1304 L12: 0.0826 REMARK 3 L13: 0.0796 L23: 0.1271 REMARK 3 S TENSOR REMARK 3 S11: 0.3228 S12: -0.4902 S13: 0.1679 REMARK 3 S21: 0.4052 S22: -0.1587 S23: 0.0550 REMARK 3 S31: -0.2488 S32: -0.1673 S33: -0.0002 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: ( CHAIN B AND RESID 153:164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.047 -12.325 14.434 REMARK 3 T TENSOR REMARK 3 T11: 0.2990 T22: 0.3094 REMARK 3 T33: 0.3373 T12: 0.0159 REMARK 3 T13: 0.0336 T23: 0.1439 REMARK 3 L TENSOR REMARK 3 L11: 0.5139 L22: 0.6337 REMARK 3 L33: 0.4842 L12: 0.2804 REMARK 3 L13: 0.2765 L23: 0.4272 REMARK 3 S TENSOR REMARK 3 S11: 0.0671 S12: -0.1021 S13: -0.5725 REMARK 3 S21: 0.0627 S22: -0.0382 S23: 0.0476 REMARK 3 S31: 0.1612 S32: -0.1565 S33: 0.2361 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: ( CHAIN B AND RESID 165:176 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.197 -10.319 13.556 REMARK 3 T TENSOR REMARK 3 T11: 0.3258 T22: 0.4940 REMARK 3 T33: 0.3894 T12: -0.0066 REMARK 3 T13: 0.0221 T23: 0.0867 REMARK 3 L TENSOR REMARK 3 L11: 0.0259 L22: 0.0485 REMARK 3 L33: 0.0709 L12: -0.0143 REMARK 3 L13: 0.0030 L23: 0.0628 REMARK 3 S TENSOR REMARK 3 S11: 0.1893 S12: -0.0575 S13: -0.2898 REMARK 3 S21: -0.0219 S22: -0.2173 S23: -0.2111 REMARK 3 S31: -0.3688 S32: 0.2766 S33: -0.0000 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: ( CHAIN B AND RESID 177:194 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.767 -16.985 23.832 REMARK 3 T TENSOR REMARK 3 T11: 0.3666 T22: 0.4172 REMARK 3 T33: 0.4197 T12: -0.0011 REMARK 3 T13: 0.0016 T23: 0.1084 REMARK 3 L TENSOR REMARK 3 L11: 0.0707 L22: 0.0871 REMARK 3 L33: 0.1361 L12: 0.0604 REMARK 3 L13: 0.0614 L23: 0.0926 REMARK 3 S TENSOR REMARK 3 S11: -0.1078 S12: -0.5669 S13: -0.1897 REMARK 3 S21: 0.2402 S22: -0.0495 S23: -0.2734 REMARK 3 S31: 0.1481 S32: 0.4016 S33: -0.0002 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: ( CHAIN B AND RESID 195:215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.129 -18.410 15.195 REMARK 3 T TENSOR REMARK 3 T11: 0.3023 T22: 0.2767 REMARK 3 T33: 0.4156 T12: 0.0202 REMARK 3 T13: 0.0503 T23: 0.1046 REMARK 3 L TENSOR REMARK 3 L11: 1.4650 L22: 0.1910 REMARK 3 L33: 0.3054 L12: -0.1861 REMARK 3 L13: -0.1844 L23: 0.2687 REMARK 3 S TENSOR REMARK 3 S11: 0.1687 S12: -0.6306 S13: -0.0585 REMARK 3 S21: 0.1724 S22: -0.0501 S23: -0.0918 REMARK 3 S31: 0.2138 S32: 0.1732 S33: -0.0182 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: ( CHAIN B AND RESID 216:246 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.517 -21.304 6.544 REMARK 3 T TENSOR REMARK 3 T11: 0.3688 T22: 0.3057 REMARK 3 T33: 0.4573 T12: 0.0631 REMARK 3 T13: 0.0853 T23: 0.0662 REMARK 3 L TENSOR REMARK 3 L11: 0.1850 L22: 0.2139 REMARK 3 L33: 0.3241 L12: 0.0021 REMARK 3 L13: 0.2277 L23: 0.0955 REMARK 3 S TENSOR REMARK 3 S11: -0.1017 S12: -0.1498 S13: -0.3003 REMARK 3 S21: -0.1409 S22: -0.1473 S23: -0.0398 REMARK 3 S31: 0.0471 S32: 0.1796 S33: -0.0466 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4POD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000085019. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : SI-111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27738 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 38.488 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 67.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.47400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 4POC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 34% PEG 2000 MME, 0.05 KBR, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.82950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.87450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.36450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.87450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.82950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.36450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 ASP A -4 REMARK 465 ILE A -3 REMARK 465 THR A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 PRO A 2 REMARK 465 SER A 3 REMARK 465 GLY B -5 REMARK 465 ASP B -4 REMARK 465 ILE B -3 REMARK 465 THR B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 ALA B 1 REMARK 465 PRO B 2 REMARK 465 GLN B 248 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 13 -146.46 52.88 REMARK 500 VAL A 196 -80.45 -123.41 REMARK 500 LYS B 13 -145.31 52.33 REMARK 500 VAL B 196 -75.63 -120.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 301 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 221 O REMARK 620 2 GLN A 223 O 82.8 REMARK 620 3 VAL A 226 O 93.9 77.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 303 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 221 O REMARK 620 2 GLN B 223 O 88.3 REMARK 620 3 VAL B 226 O 91.8 82.4 REMARK 620 4 HOH B 490 O 149.8 117.4 77.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4POC RELATED DB: PDB REMARK 900 STRUCTURE OF TRIOSEPHOSPHATE ISOMERASE WILD TYPE HUMAN ENZYME. DBREF 4POD A 0 248 UNP P60174 TPIS_HUMAN 38 286 DBREF 4POD B 0 248 UNP P60174 TPIS_HUMAN 38 286 SEQADV 4POD GLY A -5 UNP P60174 EXPRESSION TAG SEQADV 4POD ASP A -4 UNP P60174 EXPRESSION TAG SEQADV 4POD ILE A -3 UNP P60174 EXPRESSION TAG SEQADV 4POD THR A -2 UNP P60174 EXPRESSION TAG SEQADV 4POD HIS A -1 UNP P60174 EXPRESSION TAG SEQADV 4POD VAL A 170 UNP P60174 ILE 208 ENGINEERED MUTATION SEQADV 4POD GLY B -5 UNP P60174 EXPRESSION TAG SEQADV 4POD ASP B -4 UNP P60174 EXPRESSION TAG SEQADV 4POD ILE B -3 UNP P60174 EXPRESSION TAG SEQADV 4POD THR B -2 UNP P60174 EXPRESSION TAG SEQADV 4POD HIS B -1 UNP P60174 EXPRESSION TAG SEQADV 4POD VAL B 170 UNP P60174 ILE 208 ENGINEERED MUTATION SEQRES 1 A 254 GLY ASP ILE THR HIS MET ALA PRO SER ARG LYS PHE PHE SEQRES 2 A 254 VAL GLY GLY ASN TRP LYS MET ASN GLY ARG LYS GLN SER SEQRES 3 A 254 LEU GLY GLU LEU ILE GLY THR LEU ASN ALA ALA LYS VAL SEQRES 4 A 254 PRO ALA ASP THR GLU VAL VAL CYS ALA PRO PRO THR ALA SEQRES 5 A 254 TYR ILE ASP PHE ALA ARG GLN LYS LEU ASP PRO LYS ILE SEQRES 6 A 254 ALA VAL ALA ALA GLN ASN CYS TYR LYS VAL THR ASN GLY SEQRES 7 A 254 ALA PHE THR GLY GLU ILE SER PRO GLY MET ILE LYS ASP SEQRES 8 A 254 CYS GLY ALA THR TRP VAL VAL LEU GLY HIS SER GLU ARG SEQRES 9 A 254 ARG HIS VAL PHE GLY GLU SER ASP GLU LEU ILE GLY GLN SEQRES 10 A 254 LYS VAL ALA HIS ALA LEU ALA GLU GLY LEU GLY VAL ILE SEQRES 11 A 254 ALA CYS ILE GLY GLU LYS LEU ASP GLU ARG GLU ALA GLY SEQRES 12 A 254 ILE THR GLU LYS VAL VAL PHE GLU GLN THR LYS VAL ILE SEQRES 13 A 254 ALA ASP ASN VAL LYS ASP TRP SER LYS VAL VAL LEU ALA SEQRES 14 A 254 TYR GLU PRO VAL TRP ALA VAL GLY THR GLY LYS THR ALA SEQRES 15 A 254 THR PRO GLN GLN ALA GLN GLU VAL HIS GLU LYS LEU ARG SEQRES 16 A 254 GLY TRP LEU LYS SER ASN VAL SER ASP ALA VAL ALA GLN SEQRES 17 A 254 SER THR ARG ILE ILE TYR GLY GLY SER VAL THR GLY ALA SEQRES 18 A 254 THR CYS LYS GLU LEU ALA SER GLN PRO ASP VAL ASP GLY SEQRES 19 A 254 PHE LEU VAL GLY GLY ALA SER LEU LYS PRO GLU PHE VAL SEQRES 20 A 254 ASP ILE ILE ASN ALA LYS GLN SEQRES 1 B 254 GLY ASP ILE THR HIS MET ALA PRO SER ARG LYS PHE PHE SEQRES 2 B 254 VAL GLY GLY ASN TRP LYS MET ASN GLY ARG LYS GLN SER SEQRES 3 B 254 LEU GLY GLU LEU ILE GLY THR LEU ASN ALA ALA LYS VAL SEQRES 4 B 254 PRO ALA ASP THR GLU VAL VAL CYS ALA PRO PRO THR ALA SEQRES 5 B 254 TYR ILE ASP PHE ALA ARG GLN LYS LEU ASP PRO LYS ILE SEQRES 6 B 254 ALA VAL ALA ALA GLN ASN CYS TYR LYS VAL THR ASN GLY SEQRES 7 B 254 ALA PHE THR GLY GLU ILE SER PRO GLY MET ILE LYS ASP SEQRES 8 B 254 CYS GLY ALA THR TRP VAL VAL LEU GLY HIS SER GLU ARG SEQRES 9 B 254 ARG HIS VAL PHE GLY GLU SER ASP GLU LEU ILE GLY GLN SEQRES 10 B 254 LYS VAL ALA HIS ALA LEU ALA GLU GLY LEU GLY VAL ILE SEQRES 11 B 254 ALA CYS ILE GLY GLU LYS LEU ASP GLU ARG GLU ALA GLY SEQRES 12 B 254 ILE THR GLU LYS VAL VAL PHE GLU GLN THR LYS VAL ILE SEQRES 13 B 254 ALA ASP ASN VAL LYS ASP TRP SER LYS VAL VAL LEU ALA SEQRES 14 B 254 TYR GLU PRO VAL TRP ALA VAL GLY THR GLY LYS THR ALA SEQRES 15 B 254 THR PRO GLN GLN ALA GLN GLU VAL HIS GLU LYS LEU ARG SEQRES 16 B 254 GLY TRP LEU LYS SER ASN VAL SER ASP ALA VAL ALA GLN SEQRES 17 B 254 SER THR ARG ILE ILE TYR GLY GLY SER VAL THR GLY ALA SEQRES 18 B 254 THR CYS LYS GLU LEU ALA SER GLN PRO ASP VAL ASP GLY SEQRES 19 B 254 PHE LEU VAL GLY GLY ALA SER LEU LYS PRO GLU PHE VAL SEQRES 20 B 254 ASP ILE ILE ASN ALA LYS GLN HET K A 301 1 HET NA A 302 1 HET PO4 B 301 5 HET BR B 302 1 HET K B 303 1 HETNAM K POTASSIUM ION HETNAM NA SODIUM ION HETNAM PO4 PHOSPHATE ION HETNAM BR BROMIDE ION FORMUL 3 K 2(K 1+) FORMUL 4 NA NA 1+ FORMUL 5 PO4 O4 P 3- FORMUL 6 BR BR 1- FORMUL 8 HOH *267(H2 O) HELIX 1 1 ARG A 17 ALA A 31 1 15 HELIX 2 2 PRO A 44 ALA A 46 5 3 HELIX 3 3 TYR A 47 LEU A 55 1 9 HELIX 4 4 SER A 79 CYS A 86 1 8 HELIX 5 5 HIS A 95 VAL A 101 1 7 HELIX 6 6 SER A 105 GLU A 119 1 15 HELIX 7 7 LYS A 130 ALA A 136 1 7 HELIX 8 8 ILE A 138 ASP A 152 1 15 HELIX 9 9 ASP A 156 SER A 158 5 3 HELIX 10 10 PRO A 166 VAL A 170 5 5 HELIX 11 11 THR A 177 VAL A 196 1 20 HELIX 12 12 SER A 197 THR A 204 1 8 HELIX 13 13 THR A 216 SER A 222 1 7 HELIX 14 14 GLY A 232 LYS A 237 5 6 HELIX 15 15 PRO A 238 ASN A 245 1 8 HELIX 16 16 ALA A 246 GLN A 248 5 3 HELIX 17 17 ARG B 17 LYS B 32 1 16 HELIX 18 18 PRO B 44 ALA B 46 5 3 HELIX 19 19 TYR B 47 LEU B 55 1 9 HELIX 20 20 SER B 79 CYS B 86 1 8 HELIX 21 21 HIS B 95 VAL B 101 1 7 HELIX 22 22 SER B 105 GLU B 119 1 15 HELIX 23 23 LYS B 130 ALA B 136 1 7 HELIX 24 24 ILE B 138 ASP B 152 1 15 HELIX 25 25 ASP B 156 SER B 158 5 3 HELIX 26 26 PRO B 166 VAL B 170 5 5 HELIX 27 27 THR B 177 VAL B 196 1 20 HELIX 28 28 SER B 197 THR B 204 1 8 HELIX 29 29 THR B 216 SER B 222 1 7 HELIX 30 30 GLY B 232 PRO B 238 5 7 HELIX 31 31 GLU B 239 ASN B 245 1 7 SHEET 1 A 9 PHE A 6 ASN A 11 0 SHEET 2 A 9 THR A 37 ALA A 42 1 O GLU A 38 N PHE A 6 SHEET 3 A 9 ALA A 60 ALA A 63 1 O ALA A 62 N CYS A 41 SHEET 4 A 9 TRP A 90 LEU A 93 1 O VAL A 92 N ALA A 63 SHEET 5 A 9 GLY A 122 ILE A 127 1 O CYS A 126 N LEU A 93 SHEET 6 A 9 VAL A 160 TYR A 164 1 O ALA A 163 N ILE A 127 SHEET 7 A 9 ILE A 206 TYR A 208 1 O ILE A 207 N LEU A 162 SHEET 8 A 9 GLY A 228 VAL A 231 1 O GLY A 228 N TYR A 208 SHEET 9 A 9 PHE A 6 ASN A 11 1 N GLY A 9 O VAL A 231 SHEET 1 B 9 PHE B 6 ASN B 11 0 SHEET 2 B 9 THR B 37 ALA B 42 1 O ALA B 42 N GLY B 10 SHEET 3 B 9 ALA B 60 ALA B 63 1 O ALA B 62 N CYS B 41 SHEET 4 B 9 TRP B 90 LEU B 93 1 O TRP B 90 N ALA B 63 SHEET 5 B 9 GLY B 122 ILE B 127 1 O ILE B 124 N VAL B 91 SHEET 6 B 9 VAL B 160 TYR B 164 1 O ALA B 163 N ALA B 125 SHEET 7 B 9 ILE B 206 GLY B 209 1 O ILE B 207 N LEU B 162 SHEET 8 B 9 GLY B 228 VAL B 231 1 O GLY B 228 N TYR B 208 SHEET 9 B 9 PHE B 6 ASN B 11 1 N GLY B 9 O PHE B 229 LINK OD2 ASP A 56 NA NA A 302 1555 1555 3.08 LINK O ALA A 221 K K A 301 1555 1555 2.75 LINK O GLN A 223 K K A 301 1555 1555 2.74 LINK O VAL A 226 K K A 301 1555 1555 2.71 LINK O ALA B 221 K K B 303 1555 1555 2.68 LINK O GLN B 223 K K B 303 1555 1555 2.54 LINK O VAL B 226 K K B 303 1555 1555 2.66 LINK K K B 303 O HOH B 490 1555 1555 3.14 SITE 1 AC1 4 ALA A 221 GLN A 223 VAL A 226 LYS A 247 SITE 1 AC2 1 ASP A 56 SITE 1 AC3 12 LYS B 13 ALA B 169 VAL B 170 GLY B 171 SITE 2 AC3 12 SER B 211 GLY B 232 GLY B 233 BR B 302 SITE 3 AC3 12 HOH B 407 HOH B 418 HOH B 443 HOH B 451 SITE 1 AC4 4 ASN B 11 HIS B 95 GLU B 165 PO4 B 301 SITE 1 AC5 3 ALA B 221 GLN B 223 VAL B 226 CRYST1 63.659 70.729 91.749 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015709 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014138 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010899 0.00000