HEADER TRANSFERASE 26-FEB-14 4POO TITLE THE CRYSTAL STRUCTURE OF BACILLUS SUBTILIS YTQB IN COMPLEX WITH SAM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE RNA METHYLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SPIZIZENII; SOURCE 3 ORGANISM_TAXID: 655816; SOURCE 4 STRAIN: ATCC 23059 / NRRL B-14472 / W23; SOURCE 5 GENE: BSUW23_14785, YTQB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: A MODIFIED PET49B KEYWDS ROSSMANN-LIKE FOLD, A PUTATIVE METHYLTRANSFERASE, S-ADENOSYL-L- KEYWDS 2 METHIONINE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.C.PARK,W.S.SONG,S.I.YOON REVDAT 3 08-NOV-23 4POO 1 REMARK SEQADV REVDAT 2 17-SEP-14 4POO 1 JRNL REVDAT 1 02-APR-14 4POO 0 JRNL AUTH S.C.PARK,W.S.SONG,S.I.YOON JRNL TITL STRUCTURAL ANALYSIS OF A PUTATIVE SAM-DEPENDENT JRNL TITL 2 METHYLTRANSFERASE, YTQB, FROM BACILLUS SUBTILIS JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 446 921 2014 JRNL REFN ISSN 0006-291X JRNL PMID 24637210 JRNL DOI 10.1016/J.BBRC.2014.03.026 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 18155 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 982 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1271 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2595 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.67000 REMARK 3 B22 (A**2) : 0.41000 REMARK 3 B33 (A**2) : 0.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.294 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.224 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.180 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.600 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2695 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1719 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3659 ; 1.588 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4232 ; 0.977 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 342 ; 6.526 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;38.970 ;25.185 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 423 ;16.699 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;12.417 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 434 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2983 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 499 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1730 ; 0.701 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 715 ; 0.198 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2749 ; 1.239 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 965 ; 2.215 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 910 ; 3.504 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 8 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 6 A 11 5 REMARK 3 1 B 6 B 11 5 REMARK 3 2 A 13 A 21 5 REMARK 3 2 B 13 B 21 5 REMARK 3 3 A 24 A 53 5 REMARK 3 3 B 24 B 53 5 REMARK 3 4 A 56 A 151 5 REMARK 3 4 B 56 B 151 5 REMARK 3 5 A 154 A 158 5 REMARK 3 5 B 154 B 158 5 REMARK 3 6 A 161 A 166 5 REMARK 3 6 B 161 B 166 5 REMARK 3 7 A 168 A 176 5 REMARK 3 7 B 168 B 176 5 REMARK 3 8 A 180 A 188 5 REMARK 3 8 B 180 B 188 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 865 ; 0.18 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 910 ; 0.41 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 865 ; 0.67 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 910 ; 0.85 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 301 A 301 1 REMARK 3 1 B 301 B 301 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 B (A): 41 ; 0.07 ; 0.05 REMARK 3 TIGHT THERMAL 2 B (A**2): 41 ; 0.23 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 109 REMARK 3 ORIGIN FOR THE GROUP (A): 13.8000 30.0710 117.9070 REMARK 3 T TENSOR REMARK 3 T11: 0.6474 T22: 0.1285 REMARK 3 T33: 0.2146 T12: -0.0788 REMARK 3 T13: 0.0078 T23: -0.0352 REMARK 3 L TENSOR REMARK 3 L11: 4.4220 L22: 5.8032 REMARK 3 L33: 5.8976 L12: 2.6842 REMARK 3 L13: 0.6434 L23: 1.8309 REMARK 3 S TENSOR REMARK 3 S11: 0.2122 S12: -0.1663 S13: -0.0158 REMARK 3 S21: 0.1054 S22: -0.2647 S23: -0.3125 REMARK 3 S31: -0.5242 S32: 0.3209 S33: 0.0525 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 112 A 190 REMARK 3 ORIGIN FOR THE GROUP (A): 1.1890 20.2860 115.3670 REMARK 3 T TENSOR REMARK 3 T11: 0.5510 T22: 0.2270 REMARK 3 T33: 0.2718 T12: 0.0026 REMARK 3 T13: -0.0012 T23: -0.1277 REMARK 3 L TENSOR REMARK 3 L11: 2.2821 L22: 5.6419 REMARK 3 L33: 3.1251 L12: 0.2471 REMARK 3 L13: -0.3125 L23: 1.1176 REMARK 3 S TENSOR REMARK 3 S11: 0.1456 S12: -0.1913 S13: 0.2438 REMARK 3 S21: 0.1644 S22: -0.3106 S23: 0.6728 REMARK 3 S31: -0.0644 S32: -0.3174 S33: 0.1650 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 102 REMARK 3 ORIGIN FOR THE GROUP (A): 9.8150 -7.3990 97.0960 REMARK 3 T TENSOR REMARK 3 T11: 0.4663 T22: 0.0498 REMARK 3 T33: 0.2061 T12: 0.0029 REMARK 3 T13: 0.1013 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 2.0407 L22: 7.0305 REMARK 3 L33: 2.3778 L12: -0.2394 REMARK 3 L13: 0.2021 L23: 0.9970 REMARK 3 S TENSOR REMARK 3 S11: -0.0080 S12: 0.0924 S13: -0.2278 REMARK 3 S21: -0.8008 S22: -0.0158 S23: -0.5727 REMARK 3 S31: -0.0632 S32: 0.0989 S33: 0.0237 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 116 B 190 REMARK 3 ORIGIN FOR THE GROUP (A): 3.4870 -1.7970 111.1860 REMARK 3 T TENSOR REMARK 3 T11: 0.5276 T22: 0.2229 REMARK 3 T33: 0.1574 T12: -0.0430 REMARK 3 T13: 0.0158 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 1.2555 L22: 10.9989 REMARK 3 L33: 1.8582 L12: 0.9766 REMARK 3 L13: -0.4687 L23: 1.2872 REMARK 3 S TENSOR REMARK 3 S11: 0.1394 S12: -0.3728 S13: -0.1174 REMARK 3 S21: 0.5267 S22: -0.3409 S23: 0.3500 REMARK 3 S31: 0.0144 S32: -0.2358 S33: 0.2014 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4POO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000085030. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5, 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NA REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19185 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4PON REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30-36% PEG200/5% PEG2000/0.1M SODIUM REMARK 280 CACODYLATE (PH 6.5) OR 30-36% PEG200/5% PEG2000/0.1 M HEPES (PH REMARK 280 7.0) , VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291 K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.53300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.24050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.83050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.24050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.53300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.83050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 ALA A -3 REMARK 465 LYS A -2 REMARK 465 ASP A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 LEU A 3 REMARK 465 LYS A 4 REMARK 465 LYS A 5 REMARK 465 LYS A 110 REMARK 465 SER A 111 REMARK 465 GLY A 143 REMARK 465 HIS A 144 REMARK 465 PRO A 145 REMARK 465 GLN A 191 REMARK 465 ILE A 192 REMARK 465 SER A 193 REMARK 465 LYS A 194 REMARK 465 GLY B -5 REMARK 465 SER B -4 REMARK 465 ALA B -3 REMARK 465 LYS B -2 REMARK 465 ASP B -1 REMARK 465 GLY B 103 REMARK 465 TYR B 104 REMARK 465 LEU B 105 REMARK 465 PRO B 106 REMARK 465 GLY B 107 REMARK 465 GLY B 108 REMARK 465 ASP B 109 REMARK 465 LYS B 110 REMARK 465 SER B 111 REMARK 465 ILE B 112 REMARK 465 THR B 113 REMARK 465 THR B 114 REMARK 465 ASN B 115 REMARK 465 HIS B 142 REMARK 465 GLY B 143 REMARK 465 HIS B 144 REMARK 465 PRO B 145 REMARK 465 GLU B 146 REMARK 465 GLY B 147 REMARK 465 LYS B 148 REMARK 465 ALA B 149 REMARK 465 GLU B 150 REMARK 465 LYS B 151 REMARK 465 GLN B 191 REMARK 465 ILE B 192 REMARK 465 SER B 193 REMARK 465 LYS B 194 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 GLU A 40 CG CD OE1 OE2 REMARK 470 LYS A 62 CE NZ REMARK 470 GLU A 63 CG CD OE1 OE2 REMARK 470 GLU A 67 CG CD OE1 OE2 REMARK 470 GLN A 70 CG CD OE1 NE2 REMARK 470 GLU A 90 CD OE1 OE2 REMARK 470 ASP A 109 CG OD1 OD2 REMARK 470 LYS A 121 CD CE NZ REMARK 470 GLU A 146 CG CD OE1 OE2 REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 GLN A 177 CG CD OE1 NE2 REMARK 470 ASN A 178 CG OD1 ND2 REMARK 470 LYS A 189 CG CD CE NZ REMARK 470 MET B 1 CG SD CE REMARK 470 LYS B 4 CD CE NZ REMARK 470 LYS B 15 CE NZ REMARK 470 GLU B 55 CG CD OE1 OE2 REMARK 470 GLU B 63 CG CD OE1 OE2 REMARK 470 GLN B 70 CG CD OE1 NE2 REMARK 470 LYS B 85 CG CD CE NZ REMARK 470 LYS B 94 CG CD CE NZ REMARK 470 GLN B 164 CG CD OE1 NE2 REMARK 470 LYS B 189 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B 80 1.83 -69.98 REMARK 500 ASN B 178 2.35 -60.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PON RELATED DB: PDB DBREF 4POO A 1 194 UNP E0TY72 E0TY72_BACPZ 1 194 DBREF 4POO B 1 194 UNP E0TY72 E0TY72_BACPZ 1 194 SEQADV 4POO GLY A -5 UNP E0TY72 EXPRESSION TAG SEQADV 4POO SER A -4 UNP E0TY72 EXPRESSION TAG SEQADV 4POO ALA A -3 UNP E0TY72 EXPRESSION TAG SEQADV 4POO LYS A -2 UNP E0TY72 EXPRESSION TAG SEQADV 4POO ASP A -1 UNP E0TY72 EXPRESSION TAG SEQADV 4POO PRO A 0 UNP E0TY72 EXPRESSION TAG SEQADV 4POO GLY B -5 UNP E0TY72 EXPRESSION TAG SEQADV 4POO SER B -4 UNP E0TY72 EXPRESSION TAG SEQADV 4POO ALA B -3 UNP E0TY72 EXPRESSION TAG SEQADV 4POO LYS B -2 UNP E0TY72 EXPRESSION TAG SEQADV 4POO ASP B -1 UNP E0TY72 EXPRESSION TAG SEQADV 4POO PRO B 0 UNP E0TY72 EXPRESSION TAG SEQRES 1 A 200 GLY SER ALA LYS ASP PRO MET ILE LEU LYS LYS ILE LEU SEQRES 2 A 200 PRO TYR SER LYS GLU LEU LEU LYS MET ALA ALA GLY GLU SEQRES 3 A 200 GLY ASP ILE VAL ILE ASP ALA THR MET GLY ASN GLY HIS SEQRES 4 A 200 ASP THR GLN PHE LEU ALA GLU LEU VAL GLY GLU ASN GLY SEQRES 5 A 200 HIS VAL TYR ALA PHE ASP ILE GLN GLU SER ALA VAL ALA SEQRES 6 A 200 ASN THR LYS GLU ARG LEU GLY GLU ALA TYR GLN ALA ARG SEQRES 7 A 200 THR THR LEU PHE HIS LYS SER HIS ASP LYS ILE ALA LYS SEQRES 8 A 200 SER LEU PRO PRO GLU THR HIS GLY LYS VAL ALA ALA ALA SEQRES 9 A 200 VAL PHE ASN LEU GLY TYR LEU PRO GLY GLY ASP LYS SER SEQRES 10 A 200 ILE THR THR ASN GLY SER SER THR ILE LYS ALA ILE GLU SEQRES 11 A 200 GLN LEU LEU SER ILE MET LYS ASP GLU GLY LEU ILE VAL SEQRES 12 A 200 LEU VAL VAL TYR HIS GLY HIS PRO GLU GLY LYS ALA GLU SEQRES 13 A 200 LYS ASN ASP VAL LEU ASP PHE CYS ARG ASN LEU ASP GLN SEQRES 14 A 200 GLN ALA ALA ARG VAL LEU THR TYR GLY PHE ILE ASN GLN SEQRES 15 A 200 GLN ASN ASP PRO PRO PHE ILE VAL ALA ILE GLU LYS LYS SEQRES 16 A 200 ALA GLN ILE SER LYS SEQRES 1 B 200 GLY SER ALA LYS ASP PRO MET ILE LEU LYS LYS ILE LEU SEQRES 2 B 200 PRO TYR SER LYS GLU LEU LEU LYS MET ALA ALA GLY GLU SEQRES 3 B 200 GLY ASP ILE VAL ILE ASP ALA THR MET GLY ASN GLY HIS SEQRES 4 B 200 ASP THR GLN PHE LEU ALA GLU LEU VAL GLY GLU ASN GLY SEQRES 5 B 200 HIS VAL TYR ALA PHE ASP ILE GLN GLU SER ALA VAL ALA SEQRES 6 B 200 ASN THR LYS GLU ARG LEU GLY GLU ALA TYR GLN ALA ARG SEQRES 7 B 200 THR THR LEU PHE HIS LYS SER HIS ASP LYS ILE ALA LYS SEQRES 8 B 200 SER LEU PRO PRO GLU THR HIS GLY LYS VAL ALA ALA ALA SEQRES 9 B 200 VAL PHE ASN LEU GLY TYR LEU PRO GLY GLY ASP LYS SER SEQRES 10 B 200 ILE THR THR ASN GLY SER SER THR ILE LYS ALA ILE GLU SEQRES 11 B 200 GLN LEU LEU SER ILE MET LYS ASP GLU GLY LEU ILE VAL SEQRES 12 B 200 LEU VAL VAL TYR HIS GLY HIS PRO GLU GLY LYS ALA GLU SEQRES 13 B 200 LYS ASN ASP VAL LEU ASP PHE CYS ARG ASN LEU ASP GLN SEQRES 14 B 200 GLN ALA ALA ARG VAL LEU THR TYR GLY PHE ILE ASN GLN SEQRES 15 B 200 GLN ASN ASP PRO PRO PHE ILE VAL ALA ILE GLU LYS LYS SEQRES 16 B 200 ALA GLN ILE SER LYS HET SAM A 301 27 HET SAM B 301 27 HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 3 SAM 2(C15 H22 N6 O5 S) FORMUL 5 HOH *10(H2 O) HELIX 1 1 ILE A 6 ALA A 18 1 13 HELIX 2 2 GLY A 32 GLY A 43 1 12 HELIX 3 3 GLN A 54 ALA A 71 1 18 HELIX 4 4 SER A 79 ASP A 81 5 3 HELIX 5 5 LYS A 82 LEU A 87 1 6 HELIX 6 6 PRO A 88 HIS A 92 5 5 HELIX 7 7 ASN A 115 ILE A 129 1 15 HELIX 8 8 GLY A 147 ASN A 160 1 14 HELIX 9 9 LYS B 5 ALA B 18 1 14 HELIX 10 10 GLY B 32 GLY B 43 1 12 HELIX 11 11 GLN B 54 GLY B 66 1 13 HELIX 12 12 SER B 79 ASP B 81 5 3 HELIX 13 13 LYS B 82 LEU B 87 1 6 HELIX 14 14 PRO B 88 HIS B 92 5 5 HELIX 15 15 SER B 117 ILE B 129 1 13 HELIX 16 16 ASP B 153 ASN B 160 1 8 SHEET 1 A14 THR A 73 HIS A 77 0 SHEET 2 A14 HIS A 47 ASP A 52 1 N ALA A 50 O PHE A 76 SHEET 3 A14 ILE A 23 ASP A 26 1 N VAL A 24 O HIS A 47 SHEET 4 A14 VAL A 95 ASN A 101 1 O ALA A 96 N ILE A 23 SHEET 5 A14 MET A 130 VAL A 140 1 O VAL A 137 N ALA A 98 SHEET 6 A14 PHE A 182 LYS A 188 -1 O VAL A 184 N LEU A 138 SHEET 7 A14 ALA A 166 PHE A 173 -1 N TYR A 171 O ILE A 183 SHEET 8 A14 ALA B 166 PHE B 173 -1 O GLY B 172 N THR A 170 SHEET 9 A14 PHE B 182 LYS B 188 -1 O GLU B 187 N ARG B 167 SHEET 10 A14 MET B 130 VAL B 140 -1 N ILE B 136 O ILE B 186 SHEET 11 A14 VAL B 95 ASN B 101 1 N ALA B 98 O VAL B 137 SHEET 12 A14 ILE B 23 ASP B 26 1 N ILE B 23 O ALA B 96 SHEET 13 A14 HIS B 47 ASP B 52 1 O PHE B 51 N ASP B 26 SHEET 14 A14 THR B 73 HIS B 77 1 O THR B 74 N ALA B 50 SITE 1 AC1 20 ALA A 27 THR A 28 MET A 29 GLY A 30 SITE 2 AC1 20 ASN A 31 GLY A 32 HIS A 33 ASP A 34 SITE 3 AC1 20 ASP A 52 ILE A 53 GLN A 54 SER A 79 SITE 4 AC1 20 HIS A 80 ASN A 101 GLY A 103 TYR A 104 SITE 5 AC1 20 LEU A 105 THR A 113 THR A 114 HOH A 401 SITE 1 AC2 17 ASN A 45 ALA B 27 THR B 28 MET B 29 SITE 2 AC2 17 GLY B 30 ASN B 31 GLY B 32 HIS B 33 SITE 3 AC2 17 ASP B 34 ASP B 52 ILE B 53 GLN B 54 SITE 4 AC2 17 SER B 79 HIS B 80 ASN B 101 SER B 118 SITE 5 AC2 17 HOH B 402 CRYST1 47.066 77.661 100.481 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021247 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012876 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009952 0.00000