HEADER IMMUNE SYSTEM 26-FEB-14 4PP8 TITLE CRYSTAL STRUCTURE OF MURINE NK CELL LIGAND RAE-1 BETA IN COMPLEX WITH TITLE 2 NKG2D COMPND MOL_ID: 1; COMPND 2 MOLECULE: NKG2-D TYPE II INTEGRAL MEMBRANE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RAE-1BETA, UNP RESIDUES 109-232; COMPND 5 SYNONYM: KILLER CELL LECTIN-LIKE RECEPTOR SUBFAMILY K MEMBER 1, NK COMPND 6 CELL RECEPTOR D, NKG2-D-ACTIVATING NK RECEPTOR; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RETINOIC ACID EARLY-INDUCIBLE PROTEIN 1-BETA; COMPND 10 CHAIN: C, D; COMPND 11 FRAGMENT: IMMUNORECEPTOR NKG2D, UNP RESIDUES 31-204; COMPND 12 SYNONYM: RAE-1-BETA; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: KLRK1, NKG2D, RAE-1 BETA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B(+); SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 GENE: NKG2D, RAET1B; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 RIL; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET22B(+) KEYWDS MURINE NK CELL LIGAND, RAE-1 BETA, NKG2D, MHC-I PLATFORM, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR P.LI,R.K.STRONG REVDAT 2 30-OCT-24 4PP8 1 REMARK SEQADV REVDAT 1 09-APR-14 4PP8 0 SPRSDE 09-APR-14 4PP8 1JSK JRNL AUTH P.LI,G.MCDERMOTT,R.K.STRONG JRNL TITL CRYSTAL STRUCTURES OF RAE-1BETA AND ITS COMPLEX WITH THE JRNL TITL 2 ACTIVATING IMMUNORECEPTOR NKG2D. JRNL REF IMMUNITY V. 16 77 2002 JRNL REFN ISSN 1074-7613 JRNL PMID 11825567 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.CERWENKA,A.B.BAKKER,T.MCCLANAHAN,J.WAGNER,J.WU, REMARK 1 AUTH 2 J.H.PHILLIPS,L.L.LANIER REMARK 1 TITL RETINOIC ACID EARLY INDUCIBLE GENES DEFINE A LIGAND FAMILY REMARK 1 TITL 2 FOR THE ACTIVATING NKG2D RECEPTOR IN MICE. REMARK 1 REF IMMUNITY V. 12 721 2000 REMARK 1 REFN ISSN 1074-7613 REMARK 1 PMID 10894171 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.DIEFENBACH,A.M.JAMIESON,S.D.LIU,N.SHASTRI,D.H.RAULET REMARK 1 TITL LIGANDS FOR THE MURINE NKG2D RECEPTOR: EXPRESSION BY TUMOR REMARK 1 TITL 2 CELLS AND ACTIVATION OF NK CELLS AND MACROPHAGES. REMARK 1 REF NAT.IMMUNOL. V. 1 119 2000 REMARK 1 REFN ISSN 1529-2908 REMARK 1 PMID 11248803 REMARK 1 DOI 10.1038/77793 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 3 NUMBER OF REFLECTIONS : 42805 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2285 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1634 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 47.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.2020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4335 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 187 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.79000 REMARK 3 B22 (A**2) : 0.79000 REMARK 3 B33 (A**2) : -2.57000 REMARK 3 B12 (A**2) : 0.40000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.167 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.248 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4467 ; 0.007 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3982 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6072 ; 1.150 ; 1.932 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9173 ; 0.930 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 539 ; 5.761 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 211 ;37.126 ;25.403 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 728 ;13.095 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ; 8.261 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 651 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5092 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1066 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2177 ; 1.291 ; 2.873 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2176 ; 1.291 ; 2.873 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2706 ; 2.181 ; 4.290 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2707 ; 2.180 ; 4.291 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2290 ; 1.361 ; 2.972 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2290 ; 1.359 ; 2.972 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3366 ; 2.204 ; 4.412 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5142 ; 5.104 ;23.156 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5094 ; 5.051 ;22.975 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 108 232 B 108 232 6753 0.11 0.05 REMARK 3 2 C 3 170 D 3 170 7427 0.13 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 108 A 232 REMARK 3 ORIGIN FOR THE GROUP (A): 0.3715 0.1352 14.0285 REMARK 3 T TENSOR REMARK 3 T11: 0.0359 T22: 0.0151 REMARK 3 T33: 0.0146 T12: 0.0182 REMARK 3 T13: 0.0063 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 1.9338 L22: 1.8842 REMARK 3 L33: 5.1948 L12: -0.5804 REMARK 3 L13: -0.8783 L23: 0.0973 REMARK 3 S TENSOR REMARK 3 S11: 0.0826 S12: -0.0407 S13: 0.0032 REMARK 3 S21: 0.0016 S22: 0.0776 S23: -0.0946 REMARK 3 S31: 0.0424 S32: 0.1099 S33: -0.1602 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 108 B 232 REMARK 3 ORIGIN FOR THE GROUP (A): 2.8137 0.5466 -11.2202 REMARK 3 T TENSOR REMARK 3 T11: 0.1057 T22: 0.0431 REMARK 3 T33: 0.0365 T12: 0.0479 REMARK 3 T13: 0.0279 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.6450 L22: 1.2391 REMARK 3 L33: 4.7995 L12: -0.0611 REMARK 3 L13: 0.4429 L23: -1.0504 REMARK 3 S TENSOR REMARK 3 S11: 0.0625 S12: 0.0390 S13: -0.0821 REMARK 3 S21: -0.1134 S22: 0.0502 S23: -0.0651 REMARK 3 S31: 0.2933 S32: 0.1401 S33: -0.1127 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 3 C 170 REMARK 3 ORIGIN FOR THE GROUP (A): -13.4204 20.4970 -1.2496 REMARK 3 T TENSOR REMARK 3 T11: 0.0446 T22: 0.0722 REMARK 3 T33: 0.1134 T12: 0.0242 REMARK 3 T13: 0.0634 T23: 0.0527 REMARK 3 L TENSOR REMARK 3 L11: 4.0992 L22: 4.0881 REMARK 3 L33: 5.0530 L12: -0.4901 REMARK 3 L13: -0.8130 L23: -0.1560 REMARK 3 S TENSOR REMARK 3 S11: -0.1559 S12: 0.0581 S13: -0.0502 REMARK 3 S21: 0.0949 S22: 0.0935 S23: 0.3569 REMARK 3 S31: 0.1308 S32: -0.4406 S33: 0.0624 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 3 D 172 REMARK 3 ORIGIN FOR THE GROUP (A): 24.4199 22.5480 35.7475 REMARK 3 T TENSOR REMARK 3 T11: 0.1942 T22: 0.2680 REMARK 3 T33: 0.2916 T12: -0.0877 REMARK 3 T13: -0.0814 T23: 0.1042 REMARK 3 L TENSOR REMARK 3 L11: 0.7113 L22: 6.2609 REMARK 3 L33: 3.4077 L12: -1.1479 REMARK 3 L13: -0.6764 L23: -2.2994 REMARK 3 S TENSOR REMARK 3 S11: 0.0594 S12: 0.1517 S13: -0.1774 REMARK 3 S21: -0.5646 S22: 0.0900 S23: 0.5640 REMARK 3 S31: 0.2669 S32: -0.5496 S33: -0.1494 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4PP8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000085050. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45094 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 48.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG8000, 0.300M AS, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 116.77667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 233.55333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 175.16500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 291.94167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.38833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP C 1 REMARK 465 ALA C 2 REMARK 465 LYS C 41 REMARK 465 THR C 42 REMARK 465 MET C 43 REMARK 465 THR C 44 REMARK 465 SER C 45 REMARK 465 GLY C 46 REMARK 465 ASP C 47 REMARK 465 PRO C 48 REMARK 465 GLY C 49 REMARK 465 GLU C 50 REMARK 465 THR C 51 REMARK 465 ALA C 52 REMARK 465 ASN C 53 REMARK 465 LYS C 80 REMARK 465 VAL C 81 REMARK 465 ASP C 82 REMARK 465 THR C 83 REMARK 465 HIS C 84 REMARK 465 LYS C 85 REMARK 465 THR C 86 REMARK 465 ASN C 87 REMARK 465 GLY C 88 REMARK 465 SER C 171 REMARK 465 LYS C 172 REMARK 465 GLU C 173 REMARK 465 LYS C 174 REMARK 465 ASP D 1 REMARK 465 ALA D 2 REMARK 465 ASN D 40 REMARK 465 LYS D 41 REMARK 465 THR D 42 REMARK 465 MET D 43 REMARK 465 THR D 44 REMARK 465 SER D 45 REMARK 465 GLY D 46 REMARK 465 ASP D 47 REMARK 465 PRO D 48 REMARK 465 GLY D 49 REMARK 465 GLU D 50 REMARK 465 THR D 51 REMARK 465 ALA D 52 REMARK 465 ASN D 53 REMARK 465 LYS D 85 REMARK 465 THR D 86 REMARK 465 ASN D 87 REMARK 465 GLY D 88 REMARK 465 GLY D 103 REMARK 465 ARG D 104 REMARK 465 GLU D 173 REMARK 465 LYS D 174 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 202 CG CD CE NZ REMARK 470 LYS B 202 CG CD CE NZ REMARK 470 HIS C 3 CG ND1 CD2 CE1 NE2 REMARK 470 ILE C 31 CG1 CG2 CD1 REMARK 470 ASN C 40 CG OD1 ND2 REMARK 470 LYS C 58 CG CD CE NZ REMARK 470 LYS C 59 CG CD CE NZ REMARK 470 TYR C 89 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG C 104 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 154 CG CD CE NZ REMARK 470 LYS C 169 CG CD CE NZ REMARK 470 GLN C 170 CG CD OE1 NE2 REMARK 470 HIS D 3 CG ND1 CD2 CE1 NE2 REMARK 470 GLU D 30 CG CD OE1 OE2 REMARK 470 ILE D 39 CG1 CG2 CD1 REMARK 470 LYS D 58 CG CD CE NZ REMARK 470 LYS D 59 CG CD CE NZ REMARK 470 LYS D 80 CG CD CE NZ REMARK 470 HIS D 84 CG ND1 CD2 CE1 NE2 REMARK 470 LYS D 142 CG CD CE NZ REMARK 470 LYS D 151 CG CD CE NZ REMARK 470 LYS D 154 CG CD CE NZ REMARK 470 SER D 161 OG REMARK 470 GLN D 162 CG CD OE1 NE2 REMARK 470 GLU D 166 CG CD OE1 OE2 REMARK 470 LYS D 169 CG CD CE NZ REMARK 470 LYS D 172 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 118 -0.22 76.47 REMARK 500 SER A 167 -168.22 69.93 REMARK 500 SER A 210 165.11 74.69 REMARK 500 SER B 167 -168.65 67.46 REMARK 500 SER B 210 164.12 72.50 REMARK 500 GLN C 102 -127.10 70.25 REMARK 500 HIS D 91 139.83 -170.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 201 DBREF 4PP8 A 109 232 UNP O54709 NKG2D_MOUSE 109 232 DBREF 4PP8 B 109 232 UNP O54709 NKG2D_MOUSE 109 232 DBREF 4PP8 C 1 174 UNP O08603 RAE1B_MOUSE 31 204 DBREF 4PP8 D 1 174 UNP O08603 RAE1B_MOUSE 31 204 SEQADV 4PP8 MET A 108 UNP O54709 INITIATING METHIONINE SEQADV 4PP8 MET B 108 UNP O54709 INITIATING METHIONINE SEQRES 1 A 125 MET GLU GLY TYR CYS GLY PRO CYS PRO ASN ASN TRP ILE SEQRES 2 A 125 CYS HIS ARG ASN ASN CYS TYR GLN PHE PHE ASN GLU GLU SEQRES 3 A 125 LYS THR TRP ASN GLN SER GLN ALA SER CYS LEU SER GLN SEQRES 4 A 125 ASN SER SER LEU LEU LYS ILE TYR SER LYS GLU GLU GLN SEQRES 5 A 125 ASP PHE LEU LYS LEU VAL LYS SER TYR HIS TRP MET GLY SEQRES 6 A 125 LEU VAL GLN ILE PRO ALA ASN GLY SER TRP GLN TRP GLU SEQRES 7 A 125 ASP GLY SER SER LEU SER TYR ASN GLN LEU THR LEU VAL SEQRES 8 A 125 GLU ILE PRO LYS GLY SER CYS ALA VAL TYR GLY SER SER SEQRES 9 A 125 PHE LYS ALA TYR THR GLU ASP CYS ALA ASN LEU ASN THR SEQRES 10 A 125 TYR ILE CYS MET LYS ARG ALA VAL SEQRES 1 B 125 MET GLU GLY TYR CYS GLY PRO CYS PRO ASN ASN TRP ILE SEQRES 2 B 125 CYS HIS ARG ASN ASN CYS TYR GLN PHE PHE ASN GLU GLU SEQRES 3 B 125 LYS THR TRP ASN GLN SER GLN ALA SER CYS LEU SER GLN SEQRES 4 B 125 ASN SER SER LEU LEU LYS ILE TYR SER LYS GLU GLU GLN SEQRES 5 B 125 ASP PHE LEU LYS LEU VAL LYS SER TYR HIS TRP MET GLY SEQRES 6 B 125 LEU VAL GLN ILE PRO ALA ASN GLY SER TRP GLN TRP GLU SEQRES 7 B 125 ASP GLY SER SER LEU SER TYR ASN GLN LEU THR LEU VAL SEQRES 8 B 125 GLU ILE PRO LYS GLY SER CYS ALA VAL TYR GLY SER SER SEQRES 9 B 125 PHE LYS ALA TYR THR GLU ASP CYS ALA ASN LEU ASN THR SEQRES 10 B 125 TYR ILE CYS MET LYS ARG ALA VAL SEQRES 1 C 174 ASP ALA HIS SER LEU ARG CYS ASN LEU THR ILE LYS ASP SEQRES 2 C 174 PRO THR PRO ALA ASP PRO LEU TRP TYR GLU ALA LYS CYS SEQRES 3 C 174 PHE VAL GLY GLU ILE LEU ILE LEU HIS LEU SER ASN ILE SEQRES 4 C 174 ASN LYS THR MET THR SER GLY ASP PRO GLY GLU THR ALA SEQRES 5 C 174 ASN ALA THR GLU VAL LYS LYS CYS LEU THR GLN PRO LEU SEQRES 6 C 174 LYS ASN LEU CYS GLN LYS LEU ARG ASN LYS VAL SER ASN SEQRES 7 C 174 THR LYS VAL ASP THR HIS LYS THR ASN GLY TYR PRO HIS SEQRES 8 C 174 LEU GLN VAL THR MET ILE TYR PRO GLN SER GLN GLY ARG SEQRES 9 C 174 THR PRO SER ALA THR TRP GLU PHE ASN ILE SER ASP SER SEQRES 10 C 174 TYR PHE PHE THR PHE TYR THR GLU ASN MET SER TRP ARG SEQRES 11 C 174 SER ALA ASN ASP GLU SER GLY VAL ILE MET ASN LYS TRP SEQRES 12 C 174 LYS ASP ASP GLY GLU PHE VAL LYS GLN LEU LYS PHE LEU SEQRES 13 C 174 ILE HIS GLU CYS SER GLN LYS MET ASP GLU PHE LEU LYS SEQRES 14 C 174 GLN SER LYS GLU LYS SEQRES 1 D 174 ASP ALA HIS SER LEU ARG CYS ASN LEU THR ILE LYS ASP SEQRES 2 D 174 PRO THR PRO ALA ASP PRO LEU TRP TYR GLU ALA LYS CYS SEQRES 3 D 174 PHE VAL GLY GLU ILE LEU ILE LEU HIS LEU SER ASN ILE SEQRES 4 D 174 ASN LYS THR MET THR SER GLY ASP PRO GLY GLU THR ALA SEQRES 5 D 174 ASN ALA THR GLU VAL LYS LYS CYS LEU THR GLN PRO LEU SEQRES 6 D 174 LYS ASN LEU CYS GLN LYS LEU ARG ASN LYS VAL SER ASN SEQRES 7 D 174 THR LYS VAL ASP THR HIS LYS THR ASN GLY TYR PRO HIS SEQRES 8 D 174 LEU GLN VAL THR MET ILE TYR PRO GLN SER GLN GLY ARG SEQRES 9 D 174 THR PRO SER ALA THR TRP GLU PHE ASN ILE SER ASP SER SEQRES 10 D 174 TYR PHE PHE THR PHE TYR THR GLU ASN MET SER TRP ARG SEQRES 11 D 174 SER ALA ASN ASP GLU SER GLY VAL ILE MET ASN LYS TRP SEQRES 12 D 174 LYS ASP ASP GLY GLU PHE VAL LYS GLN LEU LYS PHE LEU SEQRES 13 D 174 ILE HIS GLU CYS SER GLN LYS MET ASP GLU PHE LEU LYS SEQRES 14 D 174 GLN SER LYS GLU LYS HET GOL C 201 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *187(H2 O) HELIX 1 1 THR A 135 GLN A 146 1 12 HELIX 2 2 GLN A 159 VAL A 165 5 7 HELIX 3 3 THR B 135 GLN B 146 1 12 HELIX 4 4 GLN B 159 VAL B 165 5 7 HELIX 5 5 THR C 55 ASN C 78 1 24 HELIX 6 6 ASN C 133 ASP C 145 1 13 HELIX 7 7 ASP C 146 GLN C 170 1 25 HELIX 8 8 THR D 55 ASN D 78 1 24 HELIX 9 9 ASN D 133 ASP D 145 1 13 HELIX 10 10 ASP D 146 LYS D 172 1 27 SHEET 1 A 2 GLY A 110 CYS A 112 0 SHEET 2 A 2 CYS B 112 CYS B 115 -1 O CYS B 112 N CYS A 112 SHEET 1 B 5 ILE A 120 HIS A 122 0 SHEET 2 B 5 ASN A 125 LYS A 134 -1 O TYR A 127 N ILE A 120 SHEET 3 B 5 ASN A 223 LYS A 229 -1 O TYR A 225 N PHE A 130 SHEET 4 B 5 HIS A 169 GLN A 175 1 N TRP A 170 O THR A 224 SHEET 5 B 5 TRP A 182 TRP A 184 -1 O GLN A 183 N VAL A 174 SHEET 1 C 6 SER A 149 LEU A 150 0 SHEET 2 C 6 ASN A 223 LYS A 229 -1 O MET A 228 N SER A 149 SHEET 3 C 6 HIS A 169 GLN A 175 1 N TRP A 170 O THR A 224 SHEET 4 C 6 CYS A 205 TYR A 208 -1 O TYR A 208 N HIS A 169 SHEET 5 C 6 LYS A 213 GLU A 217 -1 O TYR A 215 N VAL A 207 SHEET 6 C 6 THR A 196 VAL A 198 1 N VAL A 198 O ALA A 214 SHEET 1 D 5 ILE B 120 HIS B 122 0 SHEET 2 D 5 ASN B 125 LYS B 134 -1 O TYR B 127 N ILE B 120 SHEET 3 D 5 ASN B 223 LYS B 229 -1 O TYR B 225 N PHE B 130 SHEET 4 D 5 HIS B 169 GLN B 175 1 N TRP B 170 O THR B 224 SHEET 5 D 5 TRP B 182 TRP B 184 -1 O GLN B 183 N VAL B 174 SHEET 1 E 6 SER B 149 LEU B 150 0 SHEET 2 E 6 ASN B 223 LYS B 229 -1 O MET B 228 N SER B 149 SHEET 3 E 6 HIS B 169 GLN B 175 1 N TRP B 170 O THR B 224 SHEET 4 E 6 CYS B 205 TYR B 208 -1 O TYR B 208 N HIS B 169 SHEET 5 E 6 LYS B 213 GLU B 217 -1 O GLU B 217 N CYS B 205 SHEET 6 E 6 THR B 196 VAL B 198 1 N VAL B 198 O ALA B 214 SHEET 1 F 7 ILE C 31 SER C 37 0 SHEET 2 F 7 TYR C 22 VAL C 28 -1 N CYS C 26 O ILE C 33 SHEET 3 F 7 LEU C 5 ILE C 11 -1 N ARG C 6 O PHE C 27 SHEET 4 F 7 LEU C 92 TYR C 98 -1 O VAL C 94 N LEU C 9 SHEET 5 F 7 THR C 109 ILE C 114 -1 O GLU C 111 N THR C 95 SHEET 6 F 7 TYR C 118 TYR C 123 -1 O PHE C 120 N PHE C 112 SHEET 7 F 7 SER C 128 SER C 131 -1 O SER C 128 N TYR C 123 SHEET 1 G 7 ILE D 31 SER D 37 0 SHEET 2 G 7 TYR D 22 VAL D 28 -1 N CYS D 26 O ILE D 33 SHEET 3 G 7 LEU D 5 LYS D 12 -1 N ARG D 6 O PHE D 27 SHEET 4 G 7 HIS D 91 TYR D 98 -1 O VAL D 94 N LEU D 9 SHEET 5 G 7 THR D 109 ILE D 114 -1 O GLU D 111 N THR D 95 SHEET 6 G 7 TYR D 118 TYR D 123 -1 O PHE D 120 N PHE D 112 SHEET 7 G 7 SER D 128 SER D 131 -1 O SER D 128 N TYR D 123 SSBOND 1 CYS A 112 CYS A 121 1555 1555 2.04 SSBOND 2 CYS A 115 CYS A 126 1555 1555 2.02 SSBOND 3 CYS A 143 CYS A 227 1555 1555 2.05 SSBOND 4 CYS A 205 CYS A 219 1555 1555 2.07 SSBOND 5 CYS B 112 CYS B 121 1555 1555 2.04 SSBOND 6 CYS B 115 CYS B 126 1555 1555 2.03 SSBOND 7 CYS B 143 CYS B 227 1555 1555 2.06 SSBOND 8 CYS B 205 CYS B 219 1555 1555 2.07 SSBOND 9 CYS C 7 CYS C 26 1555 1555 2.07 SSBOND 10 CYS C 60 CYS C 160 1555 1555 2.06 SSBOND 11 CYS D 7 CYS D 26 1555 1555 2.07 SSBOND 12 CYS D 60 CYS D 160 1555 1555 2.05 CISPEP 1 GLY A 113 PRO A 114 0 1.80 CISPEP 2 GLY B 113 PRO B 114 0 3.26 SITE 1 AC1 5 SER A 211 LYS B 166 LYS C 71 ASN C 74 SITE 2 AC1 5 ASN C 78 CRYST1 58.637 58.637 350.330 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017054 0.009846 0.000000 0.00000 SCALE2 0.000000 0.019692 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002854 0.00000