HEADER HYDROLASE 26-FEB-14 4PPF TITLE MYCOBACTERIUM TUBERCULOSIS RECA CITRATE BOUND LOW TEMPERATURE TITLE 2 STRUCTURE IIA-N COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN RECA, 1ST PART, 2ND PART; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RECOMBINASE A; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: MT2806, MTV002.02C, RECA, RV2737C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: KM4104; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PEJ135 KEYWDS HOMOLOGOUS RECOMBINATION, DNA REPAIR, ATPASE, RECOMBINASE, DNA KEYWDS 2 BINDING PROTEIN, PLOOP CONTAINING NTPASE FOLD, ATP BINDING, KEYWDS 3 HYDROLYSIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.V.CHANDRAN,J.R.PRABU,N.K.PATIL,K.MUNIYAPPA,M.VIJAYAN REVDAT 3 08-NOV-23 4PPF 1 REMARK LINK REVDAT 2 16-AUG-17 4PPF 1 SOURCE REMARK REVDAT 1 18-MAR-15 4PPF 0 JRNL AUTH A.V.CHANDRAN,J.R.PRABU,A.NAUTIYAL,K.N.PATIL,K.MUNIYAPPA, JRNL AUTH 2 M.VIJAYAN JRNL TITL STRUCTURAL STUDIES ON MYCOBACTERIUM TUBERCULOSIS RECA: JRNL TITL 2 MOLECULAR PLASTICITY AND INTERSPECIES VARIABILITY JRNL REF J.BIOSCI. V. 40 13 2015 JRNL REFN ISSN 0250-4774 JRNL PMID 25740138 JRNL DOI 10.1007/S12038-014-9497-X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.R.PRABU,G.P.MANJUNATH,N.R.CHANDRA,K.MUNIYAPPA,M.VIJAYAN REMARK 1 TITL FUNCTIONALLY IMPORTANT MOVEMENTS IN RECA MOLECULES AND REMARK 1 TITL 2 FILAMENTS: STUDIES INVOLVING MUTATION AND ENVIRONMENTAL REMARK 1 TITL 3 CHANGES REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 64 1146 2008 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 19020353 REMARK 1 DOI 10.1107/S0907444908028448 REMARK 1 REFERENCE 2 REMARK 1 AUTH R.KRISHNA,G.P.MANJUNATH,P.KUMAR,A.SUROLIA,N.R.CHANDRA, REMARK 1 AUTH 2 K.MUNIYAPPA,M.VIJAYAN REMARK 1 TITL CRYSTALLOGRAPHIC IDENTIFICATION OF AN ORDERED C-TERMINAL REMARK 1 TITL 2 DOMAIN AND A SECOND NUCLEOTIDE-BINDING SITE IN RECA: NEW REMARK 1 TITL 3 INSIGHTS INTO ALLOSTERY REMARK 1 REF NUCLEIC ACIDS RES. V. 34 2186 2006 REMARK 1 REFN ISSN 0305-1048 REMARK 1 PMID 16648362 REMARK 1 DOI 10.1093/NAR/GKL107 REMARK 1 REFERENCE 3 REMARK 1 AUTH S.DATTA,R.KRISHNA,N.GANESH,N.R.CHANDRA,K.MUNIYAPPA,M.VIJAYAN REMARK 1 TITL CRYSTAL STRUCTURES OF MYCOBACTERIUM SMEGMATIS RECA AND ITS REMARK 1 TITL 2 NUCLEOTIDE COMPLEXES REMARK 1 REF J.BACTERIOL. V. 185 4280 2003 REMARK 1 REFN ISSN 0021-9193 REMARK 1 PMID 12837805 REMARK 1 DOI 10.1128/JB.185.14.4280-4284.2003 REMARK 1 REFERENCE 4 REMARK 1 AUTH S.DATTA,N.GANESH,N.R.CHANDRA,K.MUNIYAPPA,M.VIJAYAN REMARK 1 TITL STRUCTURAL STUDIES ON MTRECA-NUCLEOTIDE COMPLEXES: INSIGHTS REMARK 1 TITL 2 INTO DNA AND NUCLEOTIDE BINDING AND THE STRUCTURAL SIGNATURE REMARK 1 TITL 3 OF NTP RECOGNITION REMARK 1 REF PROTEINS V. 50 474 2003 REMARK 1 REFN ISSN 0887-3585 REMARK 1 PMID 12557189 REMARK 1 DOI 10.1002/PROT.10315 REMARK 1 REFERENCE 5 REMARK 1 AUTH S.DATTA,M.M.PRABU,M.B.VAZE,N.GANESH,N.R.CHANDRA,K.MUNIYAPPA, REMARK 1 AUTH 2 M.VIJAYAN REMARK 1 TITL CRYSTAL STRUCTURES OF MYCOBACTERIUM TUBERCULOSIS RECA AND REMARK 1 TITL 2 ITS COMPLEX WITH ADP-ALF(4): IMPLICATIONS FOR DECREASED REMARK 1 TITL 3 ATPASE ACTIVITY AND MOLECULAR AGGREGATION REMARK 1 REF NUCLEIC ACIDS RES. V. 28 4964 2000 REMARK 1 REFN ISSN 0305-1048 REMARK 1 PMID 11121488 REMARK 1 DOI 10.1093/NAR/28.24.4964 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 17909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.300 REMARK 3 FREE R VALUE TEST SET COUNT : 2053 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1284 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 149 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2263 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.16000 REMARK 3 B22 (A**2) : -0.16000 REMARK 3 B33 (A**2) : 0.53000 REMARK 3 B12 (A**2) : -0.16000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.239 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.207 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.144 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.043 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2317 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2249 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3123 ; 1.165 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5166 ; 0.732 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 309 ; 5.424 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;38.490 ;25.217 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 392 ;14.885 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;21.585 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 363 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2659 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 471 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4PPF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000085057. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : BENT COLLIMATING MIRROR AND REMARK 200 TOROID REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19963 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 46.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.87600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1G19 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 10% PEG 5000 MME, 0.2M REMARK 280 AMMONIUM ACETATE, 0.1M SODIUM CITRATE, PH 5.8, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.42333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.84667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.13500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 58.55833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 11.71167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLN A 3 REMARK 465 MET A 160 REMARK 465 GLY A 161 REMARK 465 ASP A 162 REMARK 465 SER A 163 REMARK 465 ASP A 198 REMARK 465 LYS A 199 REMARK 465 ILE A 200 REMARK 465 GLY A 201 REMARK 465 VAL A 202 REMARK 465 MET A 203 REMARK 465 PHE A 204 REMARK 465 GLY A 205 REMARK 465 SER A 206 REMARK 465 PRO A 207 REMARK 465 GLU A 208 REMARK 465 THR A 209 REMARK 465 THR A 210 REMARK 465 GLY A 331 REMARK 465 ALA A 332 REMARK 465 VAL A 333 REMARK 465 VAL A 334 REMARK 465 THR A 335 REMARK 465 ASP A 336 REMARK 465 ASP A 337 REMARK 465 PRO A 338 REMARK 465 SER A 339 REMARK 465 ASN A 340 REMARK 465 ASP A 341 REMARK 465 GLY A 342 REMARK 465 VAL A 343 REMARK 465 LEU A 344 REMARK 465 PRO A 345 REMARK 465 ALA A 346 REMARK 465 PRO A 347 REMARK 465 VAL A 348 REMARK 465 ASP A 349 REMARK 465 PHE A 350 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 4 OG1 CG2 REMARK 470 LYS A 9 CG CD CE NZ REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 LEU A 13 CD1 CD2 REMARK 470 LYS A 20 CE NZ REMARK 470 ARG A 35 CD NE CZ NH1 NH2 REMARK 470 ILE A 38 CD1 REMARK 470 LYS A 106 CE NZ REMARK 470 ARG A 153 CZ NH1 NH2 REMARK 470 HIS A 164 ND1 CD2 CE1 NE2 REMARK 470 VAL A 165 CG1 CG2 REMARK 470 ARG A 197 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 233 CG CD CE NZ REMARK 470 THR A 236 OG1 CG2 REMARK 470 ASN A 237 CG OD1 ND2 REMARK 470 ARG A 286 NE CZ NH1 NH2 REMARK 470 LYS A 287 CE NZ REMARK 470 LYS A 322 CG CD CE NZ REMARK 470 LYS A 323 CE NZ REMARK 470 ILE A 330 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 108 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 229 -60.77 -90.98 REMARK 500 ASN A 313 76.42 -118.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 406 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 321 OE1 REMARK 620 2 HOH A 504 O 124.5 REMARK 620 3 HOH A 532 O 92.6 116.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 521 O REMARK 620 2 HOH A 569 O 87.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OQF RELATED DB: PDB REMARK 900 RELATED ID: 4PO1 RELATED DB: PDB REMARK 900 RELATED ID: 4PO8 RELATED DB: PDB REMARK 900 RELATED ID: 4PO9 RELATED DB: PDB REMARK 900 RELATED ID: 4POA RELATED DB: PDB REMARK 900 RELATED ID: 4PPG RELATED DB: PDB REMARK 900 RELATED ID: 4PPN RELATED DB: PDB REMARK 900 RELATED ID: 4PPQ RELATED DB: PDB REMARK 900 RELATED ID: 4PQF RELATED DB: PDB REMARK 900 RELATED ID: 4PQR RELATED DB: PDB REMARK 900 RELATED ID: 4PQY RELATED DB: PDB REMARK 900 RELATED ID: 4PR0 RELATED DB: PDB REMARK 900 RELATED ID: 4PSA RELATED DB: PDB REMARK 900 RELATED ID: 4PSK RELATED DB: PDB REMARK 900 RELATED ID: 4PSV RELATED DB: PDB REMARK 900 RELATED ID: 4PTL RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE PROTEIN IS EXPRESSED AS A 790 AMINO ACID RESIDUE PRECURSOR REMARK 999 (UNIPROT P0A5U4). ONCE IT IS RELEASED INTO THE CELL, THE CHAIN MTU REMARK 999 RECA INTEIN (RESIDUES 252-691) IS CLEAVED OFF, CHAINS 1ST PART REMARK 999 (RESIDUES 1-251) AND 2ND PART (RESIDUES 692-790) JOIN TOGETHER TO REMARK 999 FORM THE MATURE PROTEIN. DBREF 4PPF A 1 251 UNP P0A5U4 RECA_MYCTU 1 251 DBREF 4PPF A 252 350 UNP P0A5U4 RECA_MYCTU 692 790 SEQRES 1 A 350 MET THR GLN THR PRO ASP ARG GLU LYS ALA LEU GLU LEU SEQRES 2 A 350 ALA VAL ALA GLN ILE GLU LYS SER TYR GLY LYS GLY SER SEQRES 3 A 350 VAL MET ARG LEU GLY ASP GLU ALA ARG GLN PRO ILE SER SEQRES 4 A 350 VAL ILE PRO THR GLY SER ILE ALA LEU ASP VAL ALA LEU SEQRES 5 A 350 GLY ILE GLY GLY LEU PRO ARG GLY ARG VAL ILE GLU ILE SEQRES 6 A 350 TYR GLY PRO GLU SER SER GLY LYS THR THR VAL ALA LEU SEQRES 7 A 350 HIS ALA VAL ALA ASN ALA GLN ALA ALA GLY GLY VAL ALA SEQRES 8 A 350 ALA PHE ILE ASP ALA GLU HIS ALA LEU ASP PRO ASP TYR SEQRES 9 A 350 ALA LYS LYS LEU GLY VAL ASP THR ASP SER LEU LEU VAL SEQRES 10 A 350 SER GLN PRO ASP THR GLY GLU GLN ALA LEU GLU ILE ALA SEQRES 11 A 350 ASP MET LEU ILE ARG SER GLY ALA LEU ASP ILE VAL VAL SEQRES 12 A 350 ILE ASP SER VAL ALA ALA LEU VAL PRO ARG ALA GLU LEU SEQRES 13 A 350 GLU GLY GLU MET GLY ASP SER HIS VAL GLY LEU GLN ALA SEQRES 14 A 350 ARG LEU MET SER GLN ALA LEU ARG LYS MET THR GLY ALA SEQRES 15 A 350 LEU ASN ASN SER GLY THR THR ALA ILE PHE ILE ASN GLN SEQRES 16 A 350 LEU ARG ASP LYS ILE GLY VAL MET PHE GLY SER PRO GLU SEQRES 17 A 350 THR THR THR GLY GLY LYS ALA LEU LYS PHE TYR ALA SER SEQRES 18 A 350 VAL ARG MET ASP VAL ARG ARG VAL GLU THR LEU LYS ASP SEQRES 19 A 350 GLY THR ASN ALA VAL GLY ASN ARG THR ARG VAL LYS VAL SEQRES 20 A 350 VAL LYS ASN LYS CYS SER PRO PRO PHE LYS GLN ALA GLU SEQRES 21 A 350 PHE ASP ILE LEU TYR GLY LYS GLY ILE SER ARG GLU GLY SEQRES 22 A 350 SER LEU ILE ASP MET GLY VAL ASP GLN GLY LEU ILE ARG SEQRES 23 A 350 LYS SER GLY ALA TRP PHE THR TYR GLU GLY GLU GLN LEU SEQRES 24 A 350 GLY GLN GLY LYS GLU ASN ALA ARG ASN PHE LEU VAL GLU SEQRES 25 A 350 ASN ALA ASP VAL ALA ASP GLU ILE GLU LYS LYS ILE LYS SEQRES 26 A 350 GLU LYS LEU GLY ILE GLY ALA VAL VAL THR ASP ASP PRO SEQRES 27 A 350 SER ASN ASP GLY VAL LEU PRO ALA PRO VAL ASP PHE HET FLC A 401 13 HET NA A 402 1 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET NA A 406 1 HET EDO A 407 4 HETNAM FLC CITRATE ANION HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 FLC C6 H5 O7 3- FORMUL 3 NA 2(NA 1+) FORMUL 4 EDO 4(C2 H6 O2) FORMUL 9 HOH *110(H2 O) HELIX 1 1 THR A 4 GLY A 23 1 20 HELIX 2 2 SER A 45 LEU A 52 1 8 HELIX 3 3 GLY A 72 ALA A 87 1 16 HELIX 4 4 ASP A 101 GLY A 109 1 9 HELIX 5 5 ASP A 111 LEU A 115 5 5 HELIX 6 6 THR A 122 SER A 136 1 15 HELIX 7 7 VAL A 147 LEU A 150 5 4 HELIX 8 8 PRO A 152 GLU A 157 1 6 HELIX 9 9 GLY A 166 GLY A 187 1 22 HELIX 10 10 GLY A 212 ALA A 220 1 9 HELIX 11 11 SER A 270 GLN A 282 1 13 HELIX 12 12 GLY A 302 ASN A 313 1 12 HELIX 13 13 ASN A 313 LEU A 328 1 16 SHEET 1 A 2 VAL A 40 ILE A 41 0 SHEET 2 A 2 LEU A 57 PRO A 58 -1 O LEU A 57 N ILE A 41 SHEET 1 B 9 LEU A 116 SER A 118 0 SHEET 2 B 9 ALA A 91 ASP A 95 1 N ASP A 95 O SER A 118 SHEET 3 B 9 ILE A 141 ASP A 145 1 O VAL A 143 N ILE A 94 SHEET 4 B 9 THR A 189 GLN A 195 1 O ILE A 191 N ILE A 144 SHEET 5 B 9 VAL A 62 GLY A 67 1 N ILE A 63 O ALA A 190 SHEET 6 B 9 VAL A 222 ASP A 234 1 O MET A 224 N TYR A 66 SHEET 7 B 9 ASN A 237 ASN A 250 -1 O ARG A 242 N GLU A 230 SHEET 8 B 9 GLN A 258 LEU A 264 -1 O PHE A 261 N THR A 243 SHEET 9 B 9 GLY A 268 ILE A 269 -1 O GLY A 268 N LEU A 264 SHEET 1 C 3 ARG A 286 SER A 288 0 SHEET 2 C 3 TRP A 291 TYR A 294 -1 O THR A 293 N ARG A 286 SHEET 3 C 3 GLU A 297 GLN A 301 -1 O GLU A 297 N TYR A 294 LINK OE1 GLU A 321 NA NA A 406 1555 1555 3.04 LINK NA NA A 402 O HOH A 521 1555 1555 2.09 LINK NA NA A 402 O HOH A 569 1555 1555 2.85 LINK NA NA A 406 O HOH A 504 1555 1555 2.72 LINK NA NA A 406 O HOH A 532 1555 1555 2.22 CISPEP 1 ASP A 145 SER A 146 0 4.91 SITE 1 AC1 8 GLU A 69 SER A 70 SER A 71 GLY A 72 SITE 2 AC1 8 LYS A 73 THR A 74 THR A 75 HOH A 534 SITE 1 AC2 3 ASP A 101 HOH A 521 HOH A 569 SITE 1 AC3 4 ALA A 47 GLN A 258 ALA A 259 EDO A 405 SITE 1 AC4 5 ASP A 121 PHE A 218 TYR A 219 SER A 221 SITE 2 AC4 5 HOH A 592 SITE 1 AC5 5 ALA A 47 ALA A 259 GLU A 260 EDO A 403 SITE 2 AC5 5 HOH A 604 SITE 1 AC6 3 GLU A 321 HOH A 504 HOH A 532 SITE 1 AC7 3 ARG A 7 ALA A 87 ASP A 140 CRYST1 107.020 107.020 70.270 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009344 0.005395 0.000000 0.00000 SCALE2 0.000000 0.010790 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014231 0.00000