HEADER HYDROLASE 27-FEB-14 4PPZ TITLE CRYSTAL STRUCTURE OF ZINC-BOUND SUCCINYL-DIAMINOPIMELATE DESUCCINYLASE TITLE 2 FROM NEISSERIA MENINGITIDIS MC58 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCCINYL-DIAMINOPIMELATE DESUCCINYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SDAP DESUCCINYLASE, N-SUCCINYL-LL-2,6-DIAMINOHEPTANEDIOATE COMPND 5 AMIDOHYDROLASE; COMPND 6 EC: 3.5.1.18; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 122586; SOURCE 4 STRAIN: MC58; SOURCE 5 GENE: DAPE, NMB1530; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DAPE, M20, CSGID, STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS KEYWDS 2 OF INFECTIOUS DISEASES, SUCCINYL-DIAMINOPIMELATE DESUCCINYLASE, KEYWDS 3 AMINOPEPTIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.NOCEK,R.HOLZ,W.F.ANDERSON,A.JOACHIMIAK,CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 3 28-FEB-24 4PPZ 1 REMARK LINK REVDAT 2 27-JAN-16 4PPZ 1 JRNL REVDAT 1 26-MAR-14 4PPZ 0 JRNL AUTH A.STARUS,B.NOCEK,B.BENNETT,J.A.LARRABEE,D.L.SHAW,W.SAE-LEE, JRNL AUTH 2 M.T.RUSSO,D.M.GILLNER,M.MAKOWSKA-GRZYSKA,A.JOACHIMIAK, JRNL AUTH 3 R.C.HOLZ JRNL TITL INHIBITION OF THE DAPE-ENCODED N-SUCCINYL-L,L-DIAMINOPIMELIC JRNL TITL 2 ACID DESUCCINYLASE FROM NEISSERIA MENINGITIDIS BY JRNL TITL 3 L-CAPTOPRIL. JRNL REF BIOCHEMISTRY V. 54 4834 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 26186504 JRNL DOI 10.1021/ACS.BIOCHEM.5B00475 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 29892 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1601 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1806 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2871 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 237 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.96000 REMARK 3 B22 (A**2) : 1.68000 REMARK 3 B33 (A**2) : -0.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.153 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.140 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.131 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2938 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2862 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3991 ; 1.692 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6520 ; 0.832 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 376 ; 5.632 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;33.024 ;24.621 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 490 ;14.397 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.678 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 453 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3360 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 648 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4PPZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000085077. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33502 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350,0.2M LISO4, 0.1M HEPES, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.73200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 27.73200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 58.48150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 75.82750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 58.48150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 75.82750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.73200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 58.48150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 75.82750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 27.73200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 58.48150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 75.82750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -186.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 116.96300 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -27.73200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 906 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 377 REMARK 465 GLY A 378 REMARK 465 ASN A 379 REMARK 465 ALA A 380 REMARK 465 VAL A 381 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 102 36.32 -148.52 REMARK 500 ASP A 169 -73.76 -126.99 REMARK 500 ASP A 169 -77.50 -125.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 68 NE2 REMARK 620 2 ASP A 101 OD1 100.0 REMARK 620 3 GLU A 164 OE1 118.2 96.7 REMARK 620 4 GLU A 164 OE2 85.1 143.6 51.1 REMARK 620 5 HOH A 819 O 113.9 113.9 112.1 96.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 101 OD2 REMARK 620 2 GLU A 136 OE2 82.8 REMARK 620 3 GLU A 136 OE1 139.7 57.0 REMARK 620 4 HIS A 350 NE2 97.8 101.0 87.7 REMARK 620 5 HOH A 819 O 94.9 90.8 89.3 163.5 REMARK 620 6 HOH A 841 O 120.1 154.3 99.9 88.0 76.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ISZ RELATED DB: PDB REMARK 900 RELATED ID: 4O23 RELATED DB: PDB REMARK 900 RELATED ID: 1VGY RELATED DB: PDB REMARK 900 RELATED ID: CSGID-IDP92725 RELATED DB: TARGETTRACK DBREF 4PPZ A 1 381 UNP Q9JYL2 DAPE_NEIMB 1 381 SEQRES 1 A 381 MET THR GLU THR GLN SER LEU GLU LEU ALA LYS GLU LEU SEQRES 2 A 381 ILE SER ARG PRO SER VAL THR PRO ASP ASP ARG ASP CYS SEQRES 3 A 381 GLN LYS LEU LEU ALA GLU ARG LEU HIS LYS ILE GLY PHE SEQRES 4 A 381 ALA ALA GLU GLU LEU HIS PHE GLY ASP THR LYS ASN ILE SEQRES 5 A 381 TRP LEU ARG ARG GLY THR LYS ALA PRO VAL VAL CYS PHE SEQRES 6 A 381 ALA GLY HIS THR ASP VAL VAL PRO THR GLY PRO VAL GLU SEQRES 7 A 381 LYS TRP ASP SER PRO PRO PHE GLU PRO ALA GLU ARG ASP SEQRES 8 A 381 GLY ARG LEU TYR GLY ARG GLY ALA ALA ASP MET LYS THR SEQRES 9 A 381 SER ILE ALA CYS PHE VAL THR ALA CYS GLU ARG PHE VAL SEQRES 10 A 381 ALA LYS HIS PRO ASN HIS GLN GLY SER ILE ALA LEU LEU SEQRES 11 A 381 ILE THR SER ASP GLU GLU GLY ASP ALA LEU ASP GLY THR SEQRES 12 A 381 THR LYS VAL VAL ASP VAL LEU LYS ALA ARG ASP GLU LEU SEQRES 13 A 381 ILE ASP TYR CYS ILE VAL GLY GLU PRO THR ALA VAL ASP SEQRES 14 A 381 LYS LEU GLY ASP MET ILE LYS ASN GLY ARG ARG GLY SER SEQRES 15 A 381 LEU SER GLY ASN LEU THR VAL LYS GLY LYS GLN GLY HIS SEQRES 16 A 381 ILE ALA TYR PRO HIS LEU ALA ILE ASN PRO VAL HIS THR SEQRES 17 A 381 PHE ALA PRO ALA LEU LEU GLU LEU THR GLN GLU VAL TRP SEQRES 18 A 381 ASP GLU GLY ASN GLU TYR PHE PRO PRO THR SER PHE GLN SEQRES 19 A 381 ILE SER ASN ILE ASN GLY GLY THR GLY ALA THR ASN VAL SEQRES 20 A 381 ILE PRO GLY GLU LEU ASN VAL LYS PHE ASN PHE ARG PHE SEQRES 21 A 381 SER THR GLU SER THR GLU ALA GLY LEU LYS GLN ARG VAL SEQRES 22 A 381 HIS ALA ILE LEU ASP LYS HIS GLY VAL GLN TYR ASP LEU SEQRES 23 A 381 GLN TRP SER CYS SER GLY GLN PRO PHE LEU THR GLN ALA SEQRES 24 A 381 GLY LYS LEU THR ASP VAL ALA ARG ALA ALA ILE ALA GLU SEQRES 25 A 381 THR CYS GLY ILE GLU ALA GLU LEU SER THR THR GLY GLY SEQRES 26 A 381 THR SER ASP GLY ARG PHE ILE LYS ALA ILE ALA GLN GLU SEQRES 27 A 381 LEU ILE GLU LEU GLY PRO SER ASN ALA THR ILE HIS GLN SEQRES 28 A 381 ILE ASN GLU ASN VAL ARG LEU ASN ASP ILE PRO LYS LEU SEQRES 29 A 381 SER ALA VAL TYR GLU GLY ILE LEU ALA ARG LEU LEU ALA SEQRES 30 A 381 GLY ASN ALA VAL HET ZN A 601 1 HET ZN A 602 1 HET PO4 A 603 5 HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION FORMUL 2 ZN 2(ZN 2+) FORMUL 4 PO4 O4 P 3- FORMUL 5 HOH *237(H2 O) HELIX 1 1 THR A 4 SER A 15 1 12 HELIX 2 2 ASP A 25 HIS A 35 1 11 HELIX 3 3 LYS A 36 GLY A 38 5 3 HELIX 4 4 PRO A 76 TRP A 80 5 5 HELIX 5 5 MET A 102 HIS A 120 1 19 HELIX 6 6 GLY A 142 ARG A 153 1 12 HELIX 7 7 TYR A 198 ALA A 202 5 5 HELIX 8 8 ASN A 204 GLU A 219 1 16 HELIX 9 9 THR A 265 HIS A 280 1 16 HELIX 10 10 GLY A 300 GLY A 315 1 16 HELIX 11 11 ASP A 328 LYS A 333 1 6 HELIX 12 12 ASN A 359 LEU A 376 1 18 SHEET 1 A 6 ALA A 40 GLU A 43 0 SHEET 2 A 6 ASN A 51 ARG A 56 -1 O ARG A 55 N ALA A 40 SHEET 3 A 6 SER A 126 THR A 132 -1 O ILE A 127 N ARG A 56 SHEET 4 A 6 VAL A 62 HIS A 68 1 N VAL A 63 O SER A 126 SHEET 5 A 6 ILE A 157 VAL A 162 1 O TYR A 159 N CYS A 64 SHEET 6 A 6 ALA A 336 GLU A 341 1 O ILE A 340 N VAL A 162 SHEET 1 B 3 ALA A 88 ARG A 90 0 SHEET 2 B 3 ARG A 93 TYR A 95 -1 O TYR A 95 N ALA A 88 SHEET 3 B 3 ASN A 355 ARG A 357 -1 O VAL A 356 N LEU A 94 SHEET 1 C 2 MET A 174 LYS A 176 0 SHEET 2 C 2 GLU A 319 SER A 321 1 O GLU A 319 N ILE A 175 SHEET 1 D 2 GLY A 178 ARG A 179 0 SHEET 2 D 2 PHE A 295 LEU A 296 -1 O PHE A 295 N ARG A 179 SHEET 1 E 4 SER A 232 GLY A 240 0 SHEET 2 E 4 GLU A 251 PHE A 260 -1 O ASN A 253 N ASN A 239 SHEET 3 E 4 GLY A 181 LYS A 190 -1 N LEU A 187 O VAL A 254 SHEET 4 E 4 TYR A 284 GLY A 292 -1 O SER A 289 N SER A 184 SHEET 1 F 2 GLY A 194 HIS A 195 0 SHEET 2 F 2 VAL A 247 ILE A 248 -1 O ILE A 248 N GLY A 194 LINK NE2 HIS A 68 ZN ZN A 601 1555 1555 2.05 LINK OD1 ASP A 101 ZN ZN A 601 1555 1555 1.96 LINK OD2 ASP A 101 ZN ZN A 602 1555 1555 1.95 LINK OE2 GLU A 136 ZN ZN A 602 1555 1555 2.05 LINK OE1 GLU A 136 ZN ZN A 602 1555 1555 2.46 LINK OE1 GLU A 164 ZN ZN A 601 1555 1555 2.13 LINK OE2 GLU A 164 ZN ZN A 601 1555 1555 2.70 LINK NE2 HIS A 350 ZN ZN A 602 1555 1555 2.09 LINK ZN ZN A 601 O HOH A 819 1555 1555 1.98 LINK ZN ZN A 602 O HOH A 819 1555 1555 2.12 LINK ZN ZN A 602 O HOH A 841 1555 1555 2.27 CISPEP 1 THR A 20 PRO A 21 0 -0.18 CISPEP 2 ALA A 60 PRO A 61 0 -9.45 CISPEP 3 ASP A 101 MET A 102 0 -1.47 SITE 1 AC1 7 HIS A 68 ASP A 101 GLU A 135 GLU A 136 SITE 2 AC1 7 GLU A 164 ZN A 602 HOH A 819 SITE 1 AC2 6 ASP A 101 GLU A 136 HIS A 350 ZN A 601 SITE 2 AC2 6 HOH A 819 HOH A 841 SITE 1 AC3 3 HIS A 195 ASN A 246 ARG A 259 CRYST1 116.963 151.655 55.464 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008550 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006594 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018030 0.00000