HEADER HYDROLASE 28-FEB-14 4PQ9 TITLE CRYSTAL STRUCTURE OF A BETA-1,3-GLUCANASE FROM MYCOBACTERIUM MARINUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-1,3-GLUCANASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM MARINUM; SOURCE 3 ORGANISM_TAXID: 216594; SOURCE 4 STRAIN: ATCC BAA-535 / M; SOURCE 5 GENE: MMAR_2902; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, SSGCID, GLYCOSYL HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE,SEATTLE AUTHOR 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 20-SEP-23 4PQ9 1 REMARK SEQADV LINK REVDAT 2 22-NOV-17 4PQ9 1 REMARK REVDAT 1 12-MAR-14 4PQ9 0 JRNL AUTH D.M.DRANOW,D.R.DAVIES,T.E.EDWARDS,D.LORIMER, JRNL AUTH 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL TITL CRYSTAL STRUCTURE OF A BETA-1,3-GLUCANASE FROM MYCOBACTERIUM JRNL TITL 2 MARINUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 114838 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.119 REMARK 3 R VALUE (WORKING SET) : 0.118 REMARK 3 FREE R VALUE : 0.144 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 5619 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7837 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.1070 REMARK 3 BIN FREE R VALUE SET COUNT : 411 REMARK 3 BIN FREE R VALUE : 0.1350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3696 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 558 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.32000 REMARK 3 B22 (A**2) : -0.24000 REMARK 3 B33 (A**2) : -0.12000 REMARK 3 B12 (A**2) : 0.08000 REMARK 3 B13 (A**2) : 0.19000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.037 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.036 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.019 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.882 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4021 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3490 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5535 ; 1.570 ; 1.905 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8028 ; 0.804 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 511 ; 7.122 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 206 ;32.729 ;22.913 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 548 ;11.796 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;16.585 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 529 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4737 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1064 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1910 ; 1.222 ; 0.847 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1909 ; 1.222 ; 0.847 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2396 ; 1.613 ; 1.280 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7511 ; 1.655 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 148 ;29.896 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7763 ; 7.610 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4PQ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000085087. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 114838 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.03200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.13100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.540 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: PDB ENTRY 3RQ0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 28.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MCSG1(A7): 25% PEG3350, BIS-TRIS:HCL, REMARK 280 PH=5.5, 0.2M MGCL2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K, PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2 REMARK 465 ALA A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 ALA A 10 REMARK 465 ASP A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 ARG A 14 REMARK 465 ARG A 15 REMARK 465 ASP A 16 REMARK 465 MET A 17 REMARK 465 PRO A 18 REMARK 465 LEU A 19 REMARK 465 ALA A 20 REMARK 465 PRO A 21 REMARK 465 ALA A 22 REMARK 465 PRO A 23 REMARK 465 ASN A 24 REMARK 465 GLY A 25 REMARK 465 MET B 2 REMARK 465 ALA B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 ALA B 10 REMARK 465 ASP B 11 REMARK 465 SER B 12 REMARK 465 SER B 13 REMARK 465 ARG B 14 REMARK 465 ARG B 15 REMARK 465 ASP B 16 REMARK 465 MET B 17 REMARK 465 PRO B 18 REMARK 465 LEU B 19 REMARK 465 ALA B 20 REMARK 465 PRO B 21 REMARK 465 ALA B 22 REMARK 465 PRO B 23 REMARK 465 ASN B 24 REMARK 465 GLY B 25 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 MET A 58 CG SD CE REMARK 470 LYS A 59 CG CD CE NZ REMARK 470 LYS A 163 CG CD CE NZ REMARK 470 ASN A 165 CG OD1 ND2 REMARK 470 GLN B 26 CG CD OE1 NE2 REMARK 470 SER B 27 OG REMARK 470 GLU B 57 CG CD OE1 OE2 REMARK 470 MET B 58 CG SD CE REMARK 470 LYS B 59 CG CD CE NZ REMARK 470 GLN B 138 CG CD OE1 NE2 REMARK 470 LYS B 163 CG CD CE NZ REMARK 470 GLU B 189 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 66 O HOH B 665 1.99 REMARK 500 OE2 GLU A 56 O HOH A 595 2.16 REMARK 500 O HOH B 600 O HOH B 662 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 75 N - CA - CB ANGL. DEV. = 12.7 DEGREES REMARK 500 ASP A 75 CB - CG - OD1 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP A 75 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 193 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 193 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 86 14.89 82.19 REMARK 500 ALA A 101 -146.90 -146.00 REMARK 500 ASP A 123 32.35 -95.62 REMARK 500 CYS A 124 30.35 -140.00 REMARK 500 TRP A 130 76.84 -152.01 REMARK 500 TRP A 216 118.13 -37.20 REMARK 500 ALA A 234 -148.55 59.81 REMARK 500 SER B 86 14.72 82.53 REMARK 500 ALA B 101 -147.95 -146.20 REMARK 500 ASP B 123 40.18 -99.08 REMARK 500 CYS B 124 29.61 -147.20 REMARK 500 TRP B 130 76.80 -151.31 REMARK 500 ASP B 139 -60.26 -98.73 REMARK 500 ALA B 234 -149.19 60.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 35 O REMARK 620 2 SER A 86 O 90.6 REMARK 620 3 SER A 86 OG 92.2 84.3 REMARK 620 4 ASP A 253 O 86.2 94.4 177.9 REMARK 620 5 ASP A 253 OD1 174.5 90.0 93.3 88.3 REMARK 620 6 HOH A 407 O 93.1 171.3 87.7 93.8 87.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 35 O REMARK 620 2 SER B 86 O 89.9 REMARK 620 3 SER B 86 OG 90.7 85.1 REMARK 620 4 ASP B 253 O 87.2 94.4 177.8 REMARK 620 5 ASP B 253 OD1 175.2 90.2 94.1 88.1 REMARK 620 6 HOH B 406 O 93.2 171.8 87.3 93.3 87.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTB A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTB B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-MYMAA.18623.B RELATED DB: TARGETTRACK DBREF 4PQ9 A 10 258 UNP B2HE62 B2HE62_MYCMM 29 277 DBREF 4PQ9 B 10 258 UNP B2HE62 B2HE62_MYCMM 29 277 SEQADV 4PQ9 MET A 2 UNP B2HE62 INITIATING METHIONINE SEQADV 4PQ9 ALA A 3 UNP B2HE62 EXPRESSION TAG SEQADV 4PQ9 HIS A 4 UNP B2HE62 EXPRESSION TAG SEQADV 4PQ9 HIS A 5 UNP B2HE62 EXPRESSION TAG SEQADV 4PQ9 HIS A 6 UNP B2HE62 EXPRESSION TAG SEQADV 4PQ9 HIS A 7 UNP B2HE62 EXPRESSION TAG SEQADV 4PQ9 HIS A 8 UNP B2HE62 EXPRESSION TAG SEQADV 4PQ9 HIS A 9 UNP B2HE62 EXPRESSION TAG SEQADV 4PQ9 MET B 2 UNP B2HE62 INITIATING METHIONINE SEQADV 4PQ9 ALA B 3 UNP B2HE62 EXPRESSION TAG SEQADV 4PQ9 HIS B 4 UNP B2HE62 EXPRESSION TAG SEQADV 4PQ9 HIS B 5 UNP B2HE62 EXPRESSION TAG SEQADV 4PQ9 HIS B 6 UNP B2HE62 EXPRESSION TAG SEQADV 4PQ9 HIS B 7 UNP B2HE62 EXPRESSION TAG SEQADV 4PQ9 HIS B 8 UNP B2HE62 EXPRESSION TAG SEQADV 4PQ9 HIS B 9 UNP B2HE62 EXPRESSION TAG SEQRES 1 A 257 MET ALA HIS HIS HIS HIS HIS HIS ALA ASP SER SER ARG SEQRES 2 A 257 ARG ASP MET PRO LEU ALA PRO ALA PRO ASN GLY GLN SER SEQRES 3 A 257 GLY PRO TYR LEU PHE HIS ASP GLU PHE ASP GLY PRO ALA SEQRES 4 A 257 GLY SER ALA PRO ASP SER SER LYS TRP THR VAL ALA ARG SEQRES 5 A 257 ALA ARG GLU GLU MET LYS ASP PRO THR TYR TRP GLU ARG SEQRES 6 A 257 PRO GLU ASN VAL GLY GLN TYR ARG ASP ASP ARG GLN ASN SEQRES 7 A 257 VAL PHE LEU ASP GLY LYS SER ASN LEU VAL ILE ARG ALA SEQRES 8 A 257 ALA LYS ASP GLY GLY THR TYR TYR ALA GLY LYS ILE GLN SEQRES 9 A 257 SER PRO TRP ARG GLY GLY ILE GLY HIS THR TRP GLU ALA SEQRES 10 A 257 ARG ILE LYS PHE ASP CYS LEU THR ALA GLY CYS TRP PRO SEQRES 11 A 257 ALA TRP TRP LEU GLY ASN GLN ASP ARG GLY GLU ILE ASP SEQRES 12 A 257 ILE ILE GLU TRP TYR GLY ASN GLY SER TRP PRO SER ALA SEQRES 13 A 257 THR THR VAL HIS ALA LYS ALA ASN GLY SER GLU TRP LYS SEQRES 14 A 257 THR ARG ASN VAL ALA LEU ASP SER GLY TRP HIS THR TRP SEQRES 15 A 257 ARG CYS GLN TRP ASP GLU THR GLY MET ARG PHE TRP GLN SEQRES 16 A 257 ASP TYR ALA GLU GLY ALA GLN PRO TYR PHE THR VAL ALA SEQRES 17 A 257 ALA HIS SER LEU PRO ASP TRP PRO PHE ASN ASP PRO GLY SEQRES 18 A 257 TYR THR VAL PHE PRO VAL LEU ASN LEU ALA VAL ALA GLY SEQRES 19 A 257 SER GLY GLY GLY ASP PRO ARG PRO GLY SER TYR PRO ALA SEQRES 20 A 257 GLN MET LEU VAL ASP TRP VAL ARG VAL TRP SEQRES 1 B 257 MET ALA HIS HIS HIS HIS HIS HIS ALA ASP SER SER ARG SEQRES 2 B 257 ARG ASP MET PRO LEU ALA PRO ALA PRO ASN GLY GLN SER SEQRES 3 B 257 GLY PRO TYR LEU PHE HIS ASP GLU PHE ASP GLY PRO ALA SEQRES 4 B 257 GLY SER ALA PRO ASP SER SER LYS TRP THR VAL ALA ARG SEQRES 5 B 257 ALA ARG GLU GLU MET LYS ASP PRO THR TYR TRP GLU ARG SEQRES 6 B 257 PRO GLU ASN VAL GLY GLN TYR ARG ASP ASP ARG GLN ASN SEQRES 7 B 257 VAL PHE LEU ASP GLY LYS SER ASN LEU VAL ILE ARG ALA SEQRES 8 B 257 ALA LYS ASP GLY GLY THR TYR TYR ALA GLY LYS ILE GLN SEQRES 9 B 257 SER PRO TRP ARG GLY GLY ILE GLY HIS THR TRP GLU ALA SEQRES 10 B 257 ARG ILE LYS PHE ASP CYS LEU THR ALA GLY CYS TRP PRO SEQRES 11 B 257 ALA TRP TRP LEU GLY ASN GLN ASP ARG GLY GLU ILE ASP SEQRES 12 B 257 ILE ILE GLU TRP TYR GLY ASN GLY SER TRP PRO SER ALA SEQRES 13 B 257 THR THR VAL HIS ALA LYS ALA ASN GLY SER GLU TRP LYS SEQRES 14 B 257 THR ARG ASN VAL ALA LEU ASP SER GLY TRP HIS THR TRP SEQRES 15 B 257 ARG CYS GLN TRP ASP GLU THR GLY MET ARG PHE TRP GLN SEQRES 16 B 257 ASP TYR ALA GLU GLY ALA GLN PRO TYR PHE THR VAL ALA SEQRES 17 B 257 ALA HIS SER LEU PRO ASP TRP PRO PHE ASN ASP PRO GLY SEQRES 18 B 257 TYR THR VAL PHE PRO VAL LEU ASN LEU ALA VAL ALA GLY SEQRES 19 B 257 SER GLY GLY GLY ASP PRO ARG PRO GLY SER TYR PRO ALA SEQRES 20 B 257 GLN MET LEU VAL ASP TRP VAL ARG VAL TRP HET MG A 301 1 HET MG A 302 1 HET BTB A 303 14 HET EDO A 304 4 HET MG B 301 1 HET BTB B 302 14 HETNAM MG MAGNESIUM ION HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETNAM EDO 1,2-ETHANEDIOL HETSYN BTB BIS-TRIS BUFFER HETSYN EDO ETHYLENE GLYCOL FORMUL 3 MG 3(MG 2+) FORMUL 5 BTB 2(C8 H19 N O5) FORMUL 6 EDO C2 H6 O2 FORMUL 9 HOH *558(H2 O) HELIX 1 1 THR A 62 ARG A 66 5 5 HELIX 2 2 ALA A 234 GLY A 239 1 6 HELIX 3 3 THR B 62 ARG B 66 5 5 HELIX 4 4 ALA B 234 GLY B 239 1 6 SHEET 1 A12 PHE A 206 ALA A 209 0 SHEET 2 A12 GLY A 191 GLN A 196 -1 N MET A 192 O VAL A 208 SHEET 3 A12 TRP A 180 ASP A 188 -1 N ARG A 184 O TRP A 195 SHEET 4 A12 HIS A 114 ASP A 123 -1 N TRP A 116 O CYS A 185 SHEET 5 A12 ALA A 248 TRP A 258 -1 O TRP A 258 N THR A 115 SHEET 6 A12 LEU A 88 ASP A 95 -1 N ALA A 92 O ALA A 248 SHEET 7 A12 THR A 98 GLN A 105 -1 O THR A 98 N ASP A 95 SHEET 8 A12 PHE A 226 VAL A 233 -1 O LEU A 229 N ILE A 104 SHEET 9 A12 CYS A 129 GLY A 136 -1 N GLY A 136 O PHE A 226 SHEET 10 A12 GLU A 142 GLU A 147 -1 O ILE A 143 N LEU A 135 SHEET 11 A12 ALA A 157 HIS A 161 -1 O THR A 159 N ASP A 144 SHEET 12 A12 TRP A 169 ASN A 173 -1 O LYS A 170 N VAL A 160 SHEET 1 B 4 PHE A 32 ASP A 34 0 SHEET 2 B 4 ALA A 248 TRP A 258 -1 O VAL A 257 N PHE A 32 SHEET 3 B 4 LEU A 88 ASP A 95 -1 N ALA A 92 O ALA A 248 SHEET 4 B 4 VAL A 80 LEU A 82 -1 N PHE A 81 O VAL A 89 SHEET 1 C 3 THR A 50 VAL A 51 0 SHEET 2 C 3 THR A 98 GLN A 105 -1 O GLN A 105 N THR A 50 SHEET 3 C 3 GLN A 72 TYR A 73 1 N GLN A 72 O TYR A 99 SHEET 1 D12 PHE B 206 ALA B 209 0 SHEET 2 D12 GLY B 191 GLN B 196 -1 N MET B 192 O VAL B 208 SHEET 3 D12 TRP B 180 ASP B 188 -1 N ARG B 184 O TRP B 195 SHEET 4 D12 HIS B 114 ASP B 123 -1 N ILE B 120 O HIS B 181 SHEET 5 D12 ALA B 248 TRP B 258 -1 O TRP B 258 N THR B 115 SHEET 6 D12 LEU B 88 ASP B 95 -1 N ALA B 92 O ALA B 248 SHEET 7 D12 THR B 98 GLN B 105 -1 O THR B 98 N ASP B 95 SHEET 8 D12 PHE B 226 VAL B 233 -1 O LEU B 229 N ILE B 104 SHEET 9 D12 CYS B 129 GLY B 136 -1 N GLY B 136 O PHE B 226 SHEET 10 D12 GLU B 142 GLU B 147 -1 O ILE B 143 N LEU B 135 SHEET 11 D12 ALA B 157 HIS B 161 -1 O THR B 159 N ASP B 144 SHEET 12 D12 TRP B 169 ASN B 173 -1 O LYS B 170 N VAL B 160 SHEET 1 E 4 PHE B 32 ASP B 34 0 SHEET 2 E 4 ALA B 248 TRP B 258 -1 O VAL B 257 N PHE B 32 SHEET 3 E 4 LEU B 88 ASP B 95 -1 N ALA B 92 O ALA B 248 SHEET 4 E 4 VAL B 80 LEU B 82 -1 N PHE B 81 O VAL B 89 SHEET 1 F 3 THR B 50 VAL B 51 0 SHEET 2 F 3 THR B 98 GLN B 105 -1 O GLN B 105 N THR B 50 SHEET 3 F 3 GLN B 72 TYR B 73 1 N GLN B 72 O TYR B 99 LINK O GLU A 35 MG MG A 301 1555 1555 2.07 LINK O SER A 86 MG MG A 301 1555 1555 2.06 LINK OG SER A 86 MG MG A 301 1555 1555 2.08 LINK O ASP A 253 MG MG A 301 1555 1555 2.02 LINK OD1 ASP A 253 MG MG A 301 1555 1555 2.07 LINK MG MG A 301 O HOH A 407 1555 1555 2.09 LINK O GLU B 35 MG MG B 301 1555 1555 2.06 LINK O SER B 86 MG MG B 301 1555 1555 2.05 LINK OG SER B 86 MG MG B 301 1555 1555 2.09 LINK O ASP B 253 MG MG B 301 1555 1555 2.04 LINK OD1 ASP B 253 MG MG B 301 1555 1555 2.06 LINK MG MG B 301 O HOH B 406 1555 1555 2.08 CISPEP 1 GLY A 28 PRO A 29 0 2.91 CISPEP 2 TYR A 246 PRO A 247 0 -5.25 CISPEP 3 GLY B 28 PRO B 29 0 -4.18 CISPEP 4 TYR B 246 PRO B 247 0 -6.71 SITE 1 AC1 4 GLU A 35 SER A 86 ASP A 253 HOH A 407 SITE 1 AC2 3 GLY A 111 ARG A 242 HOH A 511 SITE 1 AC3 11 TRP A 130 ALA A 132 TRP A 134 GLU A 142 SITE 2 AC3 11 ASP A 144 GLU A 147 TYR A 149 HOH A 421 SITE 3 AC3 11 HOH A 533 HOH A 602 HOH A 650 SITE 1 AC4 3 HOH A 421 HOH A 441 HOH A 535 SITE 1 AC5 4 GLU B 35 SER B 86 ASP B 253 HOH B 406 SITE 1 AC6 10 GLU B 56 TRP B 130 ALA B 132 TRP B 134 SITE 2 AC6 10 GLU B 142 ASP B 144 GLU B 147 HOH B 539 SITE 3 AC6 10 HOH B 639 HOH B 658 CRYST1 45.120 46.840 51.840 109.45 95.63 99.79 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022163 0.003826 0.003798 0.00000 SCALE2 0.000000 0.021665 0.008267 0.00000 SCALE3 0.000000 0.000000 0.020747 0.00000