data_4PQD # _entry.id 4PQD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4PQD RCSB RCSB085091 WWPDB D_1000085091 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1MWP _pdbx_database_related.details '1MWP contains APP28-123, shorter than our structure (APP22-126)' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4PQD _pdbx_database_status.recvd_initial_deposition_date 2014-03-02 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tan, X.' 1 'Li, W.' 2 'Wang, Z.' 3 # _citation.id primary _citation.title 'Mapping the interaction betwwen APP and DR6' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tan, X.' 1 primary 'Li, W.' 2 primary 'Wang, Z.' 3 # _cell.entry_id 4PQD _cell.length_a 32.755 _cell.length_b 49.025 _cell.length_c 65.141 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4PQD _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Amyloid beta A4 protein' 11840.482 1 ? ? 'the N-terminal GFLD doamin of APP, UNP residues 22-126' ? 2 water nat water 18.015 161 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;ABPP, APPI, APP, Alzheimer disease amyloid protein, Cerebral vascular amyloid peptide, CVAP, PreA4, Protease nexin-II, PN-II, N-APP, Soluble APP-alpha, S-APP-alpha, Soluble APP-beta, S-APP-beta, C99, Beta-amyloid protein 42, Beta-APP42, Beta-amyloid protein 40, Beta-APP40, C83, P3(42), P3(40), C80, Gamma-secretase C-terminal fragment 59, Amyloid intracellular domain 59, AICD-59, AID(59), Gamma-CTF(59), Gamma-secretase C-terminal fragment 57, Amyloid intracellular domain 57, AICD-57, AID(57), Gamma-CTF(57), Gamma-secretase C-terminal fragment 50, Amyloid intracellular domain 50, AICD-50, AID(50), Gamma-CTF(50), C31 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;TDGNAGLLAEPQIAMFCGRLNMHMNVQNGKWDSDPSGTKTCIDTKEGILQYCQEVYPELQITNVVEANQPVTIQNWCKRG RKQCKTHPHFVIPYRCLVGEFVSDA ; _entity_poly.pdbx_seq_one_letter_code_can ;TDGNAGLLAEPQIAMFCGRLNMHMNVQNGKWDSDPSGTKTCIDTKEGILQYCQEVYPELQITNVVEANQPVTIQNWCKRG RKQCKTHPHFVIPYRCLVGEFVSDA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 ASP n 1 3 GLY n 1 4 ASN n 1 5 ALA n 1 6 GLY n 1 7 LEU n 1 8 LEU n 1 9 ALA n 1 10 GLU n 1 11 PRO n 1 12 GLN n 1 13 ILE n 1 14 ALA n 1 15 MET n 1 16 PHE n 1 17 CYS n 1 18 GLY n 1 19 ARG n 1 20 LEU n 1 21 ASN n 1 22 MET n 1 23 HIS n 1 24 MET n 1 25 ASN n 1 26 VAL n 1 27 GLN n 1 28 ASN n 1 29 GLY n 1 30 LYS n 1 31 TRP n 1 32 ASP n 1 33 SER n 1 34 ASP n 1 35 PRO n 1 36 SER n 1 37 GLY n 1 38 THR n 1 39 LYS n 1 40 THR n 1 41 CYS n 1 42 ILE n 1 43 ASP n 1 44 THR n 1 45 LYS n 1 46 GLU n 1 47 GLY n 1 48 ILE n 1 49 LEU n 1 50 GLN n 1 51 TYR n 1 52 CYS n 1 53 GLN n 1 54 GLU n 1 55 VAL n 1 56 TYR n 1 57 PRO n 1 58 GLU n 1 59 LEU n 1 60 GLN n 1 61 ILE n 1 62 THR n 1 63 ASN n 1 64 VAL n 1 65 VAL n 1 66 GLU n 1 67 ALA n 1 68 ASN n 1 69 GLN n 1 70 PRO n 1 71 VAL n 1 72 THR n 1 73 ILE n 1 74 GLN n 1 75 ASN n 1 76 TRP n 1 77 CYS n 1 78 LYS n 1 79 ARG n 1 80 GLY n 1 81 ARG n 1 82 LYS n 1 83 GLN n 1 84 CYS n 1 85 LYS n 1 86 THR n 1 87 HIS n 1 88 PRO n 1 89 HIS n 1 90 PHE n 1 91 VAL n 1 92 ILE n 1 93 PRO n 1 94 TYR n 1 95 ARG n 1 96 CYS n 1 97 LEU n 1 98 VAL n 1 99 GLY n 1 100 GLU n 1 101 PHE n 1 102 VAL n 1 103 SER n 1 104 ASP n 1 105 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'APP, A4, AD1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A4_HUMAN _struct_ref.pdbx_db_accession P05067 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TDGNAGLLAEPQIAMFCGRLNMHMNVQNGKWDSDPSGTKTCIDTKEGILQYCQEVYPELQITNVVEANQPVTIQNWCKRG RKQCKTHPHFVIPYRCLVGEFVSDA ; _struct_ref.pdbx_align_begin 22 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4PQD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 105 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P05067 _struct_ref_seq.db_align_beg 22 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 126 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 22 _struct_ref_seq.pdbx_auth_seq_align_end 126 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4PQD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.21 _exptl_crystal.density_percent_sol 44.31 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 288 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '60% v/v TacsimateTM pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 288K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2012-11-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9793 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRF BEAMLINE BL17U' _diffrn_source.pdbx_synchrotron_site SSRF _diffrn_source.pdbx_synchrotron_beamline BL17U _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9793 # _reflns.entry_id 4PQD _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 27.23 _reflns.d_resolution_high 1.33 _reflns.number_obs 22664 _reflns.number_all 23021 _reflns.percent_possible_obs 98.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.33 1.36 54 ? ? ? ? ? ? ? ? ? ? 1 1 1.36 1.40 68 ? ? ? ? ? ? ? ? ? ? 2 1 1.40 1.44 80 ? ? ? ? ? ? ? ? ? ? 3 1 1.44 1.48 91 ? ? ? ? ? ? ? ? ? ? 4 1 1.48 1.54 99 ? ? ? ? ? ? ? ? ? ? 5 1 1.54 1.60 100 ? ? ? ? ? ? ? ? ? ? 6 1 1.60 1.67 100 ? ? ? ? ? ? ? ? ? ? 7 1 1.67 1.76 100 ? ? ? ? ? ? ? ? ? ? 8 1 1.76 1.87 100 ? ? ? ? ? ? ? ? ? ? 9 1 1.87 2.02 100 ? ? ? ? ? ? ? ? ? ? 10 1 2.02 2.22 100 ? ? ? ? ? ? ? ? ? ? 11 1 # _refine.entry_id 4PQD _refine.ls_number_reflns_obs 22664 _refine.ls_number_reflns_all 23021 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 27.23 _refine.ls_d_res_high 1.332 _refine.ls_percent_reflns_obs 91.72 _refine.ls_R_factor_obs 0.1710 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1696 _refine.ls_R_factor_R_free 0.1863 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.82 _refine.ls_number_reflns_R_free 1998 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.10 _refine.pdbx_overall_phase_error 17.48 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 825 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 161 _refine_hist.number_atoms_total 986 _refine_hist.d_res_high 1.332 _refine_hist.d_res_low 27.23 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.007 ? ? 846 ? 'X-RAY DIFFRACTION' f_angle_d 1.104 ? ? 1143 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 12.320 ? ? 314 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.081 ? ? 124 ? 'X-RAY DIFFRACTION' f_plane_restr 0.005 ? ? 151 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.3317 1.3650 862 0.1929 54.00 0.1843 . . 83 . . . . 'X-RAY DIFFRACTION' . 1.3650 1.4019 1065 0.1716 68.00 0.2025 . . 104 . . . . 'X-RAY DIFFRACTION' . 1.4019 1.4431 1252 0.1772 80.00 0.1637 . . 121 . . . . 'X-RAY DIFFRACTION' . 1.4431 1.4897 1467 0.1773 91.00 0.1897 . . 142 . . . . 'X-RAY DIFFRACTION' . 1.4897 1.5429 1554 0.1694 99.00 0.1869 . . 149 . . . . 'X-RAY DIFFRACTION' . 1.5429 1.6047 1576 0.1635 100.00 0.1817 . . 151 . . . . 'X-RAY DIFFRACTION' . 1.6047 1.6777 1594 0.1692 100.00 0.1932 . . 155 . . . . 'X-RAY DIFFRACTION' . 1.6777 1.7661 1583 0.1658 100.00 0.1772 . . 153 . . . . 'X-RAY DIFFRACTION' . 1.7661 1.8768 1604 0.1661 100.00 0.1862 . . 156 . . . . 'X-RAY DIFFRACTION' . 1.8768 2.0216 1600 0.1572 100.00 0.2019 . . 155 . . . . 'X-RAY DIFFRACTION' . 2.0216 2.2250 1621 0.1532 100.00 0.1563 . . 156 . . . . 'X-RAY DIFFRACTION' . 2.2250 2.5468 1636 0.1655 100.00 0.1780 . . 159 . . . . 'X-RAY DIFFRACTION' . 2.5468 3.2079 1634 0.1740 100.00 0.1943 . . 158 . . . . 'X-RAY DIFFRACTION' . 3.2079 27.2411 1618 0.1804 93.00 0.1975 . . 156 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4PQD _struct.title 'The longer crystal structure of the grow factor like domain from Beta amypoid precusor protein (APP22-126)' _struct.pdbx_descriptor 'Amyloid beta A4 protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4PQD _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text ;Alphan and Beta, Growth factor, Heparin binding, protein binding, Alzheimer's Disease, Death receptor 6 binding ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 4 ? LEU A 8 ? ASN A 25 LEU A 29 5 ? 5 HELX_P HELX_P2 2 THR A 44 ? TYR A 56 ? THR A 65 TYR A 77 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 17 SG ? ? ? 1_555 A CYS 41 SG ? ? A CYS 38 A CYS 62 1_555 ? ? ? ? ? ? ? 2.041 ? disulf2 disulf ? ? A CYS 52 SG ? ? ? 1_555 A CYS 96 SG ? ? A CYS 73 A CYS 117 1_555 ? ? ? ? ? ? ? 2.085 ? disulf3 disulf ? ? A CYS 77 SG ? ? ? 1_555 A CYS 84 SG ? ? A CYS 98 A CYS 105 1_555 ? ? ? ? ? ? ? 2.037 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 31 ? SER A 33 ? TRP A 52 SER A 54 A 2 MET A 22 ? MET A 24 ? MET A 43 MET A 45 A 3 GLN A 12 ? ALA A 14 ? GLN A 33 ALA A 35 A 4 TYR A 94 ? VAL A 98 ? TYR A 115 VAL A 119 A 5 ILE A 61 ? GLU A 66 ? ILE A 82 GLU A 87 B 1 VAL A 71 ? ILE A 73 ? VAL A 92 ILE A 94 B 2 HIS A 89 ? VAL A 91 ? HIS A 110 VAL A 112 C 1 TRP A 76 ? LYS A 78 ? TRP A 97 LYS A 99 C 2 LYS A 82 ? LYS A 85 ? LYS A 103 LYS A 106 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ASP A 32 ? O ASP A 53 N HIS A 23 ? N HIS A 44 A 2 3 O MET A 22 ? O MET A 43 N ALA A 14 ? N ALA A 35 A 3 4 N ILE A 13 ? N ILE A 34 O TYR A 94 ? O TYR A 115 A 4 5 O ARG A 95 ? O ARG A 116 N VAL A 65 ? N VAL A 86 B 1 2 N VAL A 71 ? N VAL A 92 O VAL A 91 ? O VAL A 112 C 1 2 N LYS A 78 ? N LYS A 99 O LYS A 82 ? O LYS A 103 # _database_PDB_matrix.entry_id 4PQD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4PQD _atom_sites.fract_transf_matrix[1][1] 0.030530 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020398 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015351 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 22 22 THR THR A . n A 1 2 ASP 2 23 23 ASP ASP A . n A 1 3 GLY 3 24 24 GLY GLY A . n A 1 4 ASN 4 25 25 ASN ASN A . n A 1 5 ALA 5 26 26 ALA ALA A . n A 1 6 GLY 6 27 27 GLY GLY A . n A 1 7 LEU 7 28 28 LEU LEU A . n A 1 8 LEU 8 29 29 LEU LEU A . n A 1 9 ALA 9 30 30 ALA ALA A . n A 1 10 GLU 10 31 31 GLU GLU A . n A 1 11 PRO 11 32 32 PRO PRO A . n A 1 12 GLN 12 33 33 GLN GLN A . n A 1 13 ILE 13 34 34 ILE ILE A . n A 1 14 ALA 14 35 35 ALA ALA A . n A 1 15 MET 15 36 36 MET MET A . n A 1 16 PHE 16 37 37 PHE PHE A . n A 1 17 CYS 17 38 38 CYS CYS A . n A 1 18 GLY 18 39 39 GLY GLY A . n A 1 19 ARG 19 40 40 ARG ARG A . n A 1 20 LEU 20 41 41 LEU LEU A . n A 1 21 ASN 21 42 42 ASN ASN A . n A 1 22 MET 22 43 43 MET MET A . n A 1 23 HIS 23 44 44 HIS HIS A . n A 1 24 MET 24 45 45 MET MET A . n A 1 25 ASN 25 46 46 ASN ASN A . n A 1 26 VAL 26 47 47 VAL VAL A . n A 1 27 GLN 27 48 48 GLN GLN A . n A 1 28 ASN 28 49 49 ASN ASN A . n A 1 29 GLY 29 50 50 GLY GLY A . n A 1 30 LYS 30 51 51 LYS LYS A . n A 1 31 TRP 31 52 52 TRP TRP A . n A 1 32 ASP 32 53 53 ASP ASP A . n A 1 33 SER 33 54 54 SER SER A . n A 1 34 ASP 34 55 55 ASP ASP A . n A 1 35 PRO 35 56 56 PRO PRO A . n A 1 36 SER 36 57 57 SER SER A . n A 1 37 GLY 37 58 58 GLY GLY A . n A 1 38 THR 38 59 59 THR THR A . n A 1 39 LYS 39 60 60 LYS LYS A . n A 1 40 THR 40 61 61 THR THR A . n A 1 41 CYS 41 62 62 CYS CYS A . n A 1 42 ILE 42 63 63 ILE ILE A . n A 1 43 ASP 43 64 64 ASP ASP A . n A 1 44 THR 44 65 65 THR THR A . n A 1 45 LYS 45 66 66 LYS LYS A . n A 1 46 GLU 46 67 67 GLU GLU A . n A 1 47 GLY 47 68 68 GLY GLY A . n A 1 48 ILE 48 69 69 ILE ILE A . n A 1 49 LEU 49 70 70 LEU LEU A . n A 1 50 GLN 50 71 71 GLN GLN A . n A 1 51 TYR 51 72 72 TYR TYR A . n A 1 52 CYS 52 73 73 CYS CYS A . n A 1 53 GLN 53 74 74 GLN GLN A . n A 1 54 GLU 54 75 75 GLU GLU A . n A 1 55 VAL 55 76 76 VAL VAL A . n A 1 56 TYR 56 77 77 TYR TYR A . n A 1 57 PRO 57 78 78 PRO PRO A . n A 1 58 GLU 58 79 79 GLU GLU A . n A 1 59 LEU 59 80 80 LEU LEU A . n A 1 60 GLN 60 81 81 GLN GLN A . n A 1 61 ILE 61 82 82 ILE ILE A . n A 1 62 THR 62 83 83 THR THR A . n A 1 63 ASN 63 84 84 ASN ASN A . n A 1 64 VAL 64 85 85 VAL VAL A . n A 1 65 VAL 65 86 86 VAL VAL A . n A 1 66 GLU 66 87 87 GLU GLU A . n A 1 67 ALA 67 88 88 ALA ALA A . n A 1 68 ASN 68 89 89 ASN ASN A . n A 1 69 GLN 69 90 90 GLN GLN A . n A 1 70 PRO 70 91 91 PRO PRO A . n A 1 71 VAL 71 92 92 VAL VAL A . n A 1 72 THR 72 93 93 THR THR A . n A 1 73 ILE 73 94 94 ILE ILE A . n A 1 74 GLN 74 95 95 GLN GLN A . n A 1 75 ASN 75 96 96 ASN ASN A . n A 1 76 TRP 76 97 97 TRP TRP A . n A 1 77 CYS 77 98 98 CYS CYS A . n A 1 78 LYS 78 99 99 LYS LYS A . n A 1 79 ARG 79 100 100 ARG ARG A . n A 1 80 GLY 80 101 101 GLY GLY A . n A 1 81 ARG 81 102 102 ARG ARG A . n A 1 82 LYS 82 103 103 LYS LYS A . n A 1 83 GLN 83 104 104 GLN GLN A . n A 1 84 CYS 84 105 105 CYS CYS A . n A 1 85 LYS 85 106 106 LYS LYS A . n A 1 86 THR 86 107 107 THR THR A . n A 1 87 HIS 87 108 108 HIS HIS A . n A 1 88 PRO 88 109 109 PRO PRO A . n A 1 89 HIS 89 110 110 HIS HIS A . n A 1 90 PHE 90 111 111 PHE PHE A . n A 1 91 VAL 91 112 112 VAL VAL A . n A 1 92 ILE 92 113 113 ILE ILE A . n A 1 93 PRO 93 114 114 PRO PRO A . n A 1 94 TYR 94 115 115 TYR TYR A . n A 1 95 ARG 95 116 116 ARG ARG A . n A 1 96 CYS 96 117 117 CYS CYS A . n A 1 97 LEU 97 118 118 LEU LEU A . n A 1 98 VAL 98 119 119 VAL VAL A . n A 1 99 GLY 99 120 120 GLY GLY A . n A 1 100 GLU 100 121 121 GLU GLU A . n A 1 101 PHE 101 122 122 PHE PHE A . n A 1 102 VAL 102 123 123 VAL VAL A . n A 1 103 SER 103 124 124 SER SER A . n A 1 104 ASP 104 125 125 ASP ASP A . n A 1 105 ALA 105 126 126 ALA ALA A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2015-04-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 46.7127 5.2175 9.7527 0.2531 0.2892 0.2962 0.0344 0.0444 -0.0695 4.2680 5.0709 8.7089 4.3751 1.4502 -0.7138 -0.0237 0.6671 -0.7492 -0.4046 0.0363 -0.7939 0.9634 0.6774 0.0114 'X-RAY DIFFRACTION' 2 ? refined 25.1791 17.9023 16.5433 0.0682 0.0513 0.0632 -0.0145 0.0066 0.0161 2.8233 4.1140 2.5568 -1.7118 -1.5866 1.6649 0.0252 -0.1138 0.2588 -0.0573 0.0279 -0.0339 -0.0850 -0.0956 -0.0347 'X-RAY DIFFRACTION' 3 ? refined 29.0549 12.8067 10.6486 0.0800 0.1306 0.0793 0.0070 0.0099 -0.0300 5.3592 4.5021 3.6499 -2.3943 -0.6339 0.1502 0.1149 0.5535 -0.1782 -0.3380 -0.1615 -0.0139 0.1038 0.0381 0.0505 'X-RAY DIFFRACTION' 4 ? refined 17.3010 15.0618 20.1457 0.0822 0.1285 0.1158 -0.0085 0.0108 -0.0045 2.1666 2.2052 6.3676 0.9370 2.7286 1.4544 -0.0073 -0.1229 -0.0160 0.0762 -0.0394 0.3069 -0.0387 -0.5486 0.0453 'X-RAY DIFFRACTION' 5 ? refined 23.7917 11.6685 25.5774 0.0610 0.0816 0.0891 -0.0086 0.0143 0.0040 2.7671 5.7161 7.0719 -2.5866 -1.6773 2.1126 -0.0398 -0.0911 -0.1626 0.2267 0.0037 0.1253 0.0796 0.0215 0.0761 'X-RAY DIFFRACTION' 6 ? refined 31.6318 14.9679 21.4978 0.0566 0.0772 0.0767 -0.0006 0.0041 -0.0061 0.9524 3.2681 2.1994 -0.3635 0.2775 -1.4365 -0.0389 -0.0038 0.0031 0.1554 -0.0588 -0.1791 -0.0573 0.1610 0.0905 'X-RAY DIFFRACTION' 7 ? refined 17.5629 20.1084 7.4759 0.2579 0.2328 0.2068 -0.0457 -0.0603 0.0382 4.2609 5.1311 1.4274 4.1902 -1.0894 -0.6624 -0.5585 0.9280 0.2860 -0.9952 0.5385 0.6237 -0.0974 -0.1978 -0.0240 'X-RAY DIFFRACTION' 8 ? refined 32.9748 13.2718 25.9261 0.0753 0.0561 0.0579 -0.0009 -0.0049 -0.0050 1.2881 2.8094 3.2661 -1.2474 1.0648 -2.2231 0.0546 0.0201 -0.0412 0.1516 -0.0673 0.0335 0.1317 0.1550 0.0371 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 22 through 28 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 29 through 42 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 43 through 54 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 55 through 65 ) ; 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 66 through 76 ) ; 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 77 through 94 ) ; 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 95 through 109 ) ; 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 110 through 126 ) ; # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 AMoRE phasing . ? 2 PHENIX refinement '(phenix.refine: 1.8.2_1309)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 295 ? ? O A HOH 296 ? ? 1.82 2 1 O A HOH 347 ? ? O A HOH 360 ? ? 1.85 3 1 O A HOH 217 ? ? O A HOH 221 ? ? 1.96 4 1 O A HOH 349 ? ? O A HOH 360 ? ? 1.98 5 1 O A HOH 253 ? ? O A HOH 254 ? ? 2.00 6 1 O A HOH 298 ? ? O A HOH 326 ? ? 2.05 7 1 O A HOH 249 ? ? O A HOH 295 ? ? 2.05 8 1 O A HOH 313 ? ? O A HOH 314 ? ? 2.09 9 1 O A HOH 254 ? ? O A HOH 285 ? ? 2.12 10 1 O A HOH 233 ? ? O A HOH 242 ? ? 2.16 11 1 O A HOH 284 ? ? O A HOH 321 ? ? 2.19 12 1 O A HOH 244 ? ? O A HOH 288 ? ? 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 323 ? ? 1_555 O A HOH 324 ? ? 3_755 1.73 2 1 O A HOH 291 ? ? 1_555 O A HOH 293 ? ? 3_645 1.76 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 25 ? ? -153.31 82.91 2 1 THR A 61 ? ? -115.73 -166.53 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 201 1 HOH HOH A . B 2 HOH 2 202 2 HOH HOH A . B 2 HOH 3 203 3 HOH HOH A . B 2 HOH 4 204 4 HOH HOH A . B 2 HOH 5 205 5 HOH HOH A . B 2 HOH 6 206 6 HOH HOH A . B 2 HOH 7 207 7 HOH HOH A . B 2 HOH 8 208 8 HOH HOH A . B 2 HOH 9 209 9 HOH HOH A . B 2 HOH 10 210 10 HOH HOH A . B 2 HOH 11 211 11 HOH HOH A . B 2 HOH 12 212 12 HOH HOH A . B 2 HOH 13 213 13 HOH HOH A . B 2 HOH 14 214 14 HOH HOH A . B 2 HOH 15 215 15 HOH HOH A . B 2 HOH 16 216 16 HOH HOH A . B 2 HOH 17 217 17 HOH HOH A . B 2 HOH 18 218 18 HOH HOH A . B 2 HOH 19 219 19 HOH HOH A . B 2 HOH 20 220 20 HOH HOH A . B 2 HOH 21 221 21 HOH HOH A . B 2 HOH 22 222 22 HOH HOH A . B 2 HOH 23 223 23 HOH HOH A . B 2 HOH 24 224 24 HOH HOH A . B 2 HOH 25 225 25 HOH HOH A . B 2 HOH 26 226 26 HOH HOH A . B 2 HOH 27 227 27 HOH HOH A . B 2 HOH 28 228 28 HOH HOH A . B 2 HOH 29 229 29 HOH HOH A . B 2 HOH 30 230 30 HOH HOH A . B 2 HOH 31 231 31 HOH HOH A . B 2 HOH 32 232 32 HOH HOH A . B 2 HOH 33 233 33 HOH HOH A . B 2 HOH 34 234 34 HOH HOH A . B 2 HOH 35 235 35 HOH HOH A . B 2 HOH 36 236 36 HOH HOH A . B 2 HOH 37 237 37 HOH HOH A . B 2 HOH 38 238 38 HOH HOH A . B 2 HOH 39 239 39 HOH HOH A . B 2 HOH 40 240 40 HOH HOH A . B 2 HOH 41 241 41 HOH HOH A . B 2 HOH 42 242 42 HOH HOH A . B 2 HOH 43 243 43 HOH HOH A . B 2 HOH 44 244 44 HOH HOH A . B 2 HOH 45 245 45 HOH HOH A . B 2 HOH 46 246 46 HOH HOH A . B 2 HOH 47 247 47 HOH HOH A . B 2 HOH 48 248 48 HOH HOH A . B 2 HOH 49 249 49 HOH HOH A . B 2 HOH 50 250 50 HOH HOH A . B 2 HOH 51 251 51 HOH HOH A . B 2 HOH 52 252 52 HOH HOH A . B 2 HOH 53 253 53 HOH HOH A . B 2 HOH 54 254 54 HOH HOH A . B 2 HOH 55 255 55 HOH HOH A . B 2 HOH 56 256 56 HOH HOH A . B 2 HOH 57 257 57 HOH HOH A . B 2 HOH 58 258 58 HOH HOH A . B 2 HOH 59 259 59 HOH HOH A . B 2 HOH 60 260 60 HOH HOH A . B 2 HOH 61 261 61 HOH HOH A . B 2 HOH 62 262 62 HOH HOH A . B 2 HOH 63 263 63 HOH HOH A . B 2 HOH 64 264 64 HOH HOH A . B 2 HOH 65 265 65 HOH HOH A . B 2 HOH 66 266 66 HOH HOH A . B 2 HOH 67 267 67 HOH HOH A . B 2 HOH 68 268 68 HOH HOH A . B 2 HOH 69 269 69 HOH HOH A . B 2 HOH 70 270 70 HOH HOH A . B 2 HOH 71 271 71 HOH HOH A . B 2 HOH 72 272 72 HOH HOH A . B 2 HOH 73 273 73 HOH HOH A . B 2 HOH 74 274 74 HOH HOH A . B 2 HOH 75 275 75 HOH HOH A . B 2 HOH 76 276 76 HOH HOH A . B 2 HOH 77 277 77 HOH HOH A . B 2 HOH 78 278 78 HOH HOH A . B 2 HOH 79 279 79 HOH HOH A . B 2 HOH 80 280 80 HOH HOH A . B 2 HOH 81 281 81 HOH HOH A . B 2 HOH 82 282 82 HOH HOH A . B 2 HOH 83 283 83 HOH HOH A . B 2 HOH 84 284 84 HOH HOH A . B 2 HOH 85 285 85 HOH HOH A . B 2 HOH 86 286 86 HOH HOH A . B 2 HOH 87 287 87 HOH HOH A . B 2 HOH 88 288 88 HOH HOH A . B 2 HOH 89 289 89 HOH HOH A . B 2 HOH 90 290 90 HOH HOH A . B 2 HOH 91 291 91 HOH HOH A . B 2 HOH 92 292 92 HOH HOH A . B 2 HOH 93 293 93 HOH HOH A . B 2 HOH 94 294 94 HOH HOH A . B 2 HOH 95 295 95 HOH HOH A . B 2 HOH 96 296 96 HOH HOH A . B 2 HOH 97 297 97 HOH HOH A . B 2 HOH 98 298 98 HOH HOH A . B 2 HOH 99 299 99 HOH HOH A . B 2 HOH 100 300 100 HOH HOH A . B 2 HOH 101 301 101 HOH HOH A . B 2 HOH 102 302 102 HOH HOH A . B 2 HOH 103 303 103 HOH HOH A . B 2 HOH 104 304 104 HOH HOH A . B 2 HOH 105 305 105 HOH HOH A . B 2 HOH 106 306 106 HOH HOH A . B 2 HOH 107 307 107 HOH HOH A . B 2 HOH 108 308 108 HOH HOH A . B 2 HOH 109 309 109 HOH HOH A . B 2 HOH 110 310 110 HOH HOH A . B 2 HOH 111 311 111 HOH HOH A . B 2 HOH 112 312 112 HOH HOH A . B 2 HOH 113 313 113 HOH HOH A . B 2 HOH 114 314 114 HOH HOH A . B 2 HOH 115 315 115 HOH HOH A . B 2 HOH 116 316 116 HOH HOH A . B 2 HOH 117 317 117 HOH HOH A . B 2 HOH 118 318 118 HOH HOH A . B 2 HOH 119 319 119 HOH HOH A . B 2 HOH 120 320 120 HOH HOH A . B 2 HOH 121 321 121 HOH HOH A . B 2 HOH 122 322 122 HOH HOH A . B 2 HOH 123 323 123 HOH HOH A . B 2 HOH 124 324 124 HOH HOH A . B 2 HOH 125 325 125 HOH HOH A . B 2 HOH 126 326 126 HOH HOH A . B 2 HOH 127 327 127 HOH HOH A . B 2 HOH 128 328 128 HOH HOH A . B 2 HOH 129 329 129 HOH HOH A . B 2 HOH 130 330 130 HOH HOH A . B 2 HOH 131 331 131 HOH HOH A . B 2 HOH 132 332 132 HOH HOH A . B 2 HOH 133 333 133 HOH HOH A . B 2 HOH 134 334 134 HOH HOH A . B 2 HOH 135 335 135 HOH HOH A . B 2 HOH 136 336 136 HOH HOH A . B 2 HOH 137 337 137 HOH HOH A . B 2 HOH 138 338 138 HOH HOH A . B 2 HOH 139 339 139 HOH HOH A . B 2 HOH 140 340 140 HOH HOH A . B 2 HOH 141 341 141 HOH HOH A . B 2 HOH 142 342 142 HOH HOH A . B 2 HOH 143 343 143 HOH HOH A . B 2 HOH 144 344 144 HOH HOH A . B 2 HOH 145 345 145 HOH HOH A . B 2 HOH 146 346 146 HOH HOH A . B 2 HOH 147 347 147 HOH HOH A . B 2 HOH 148 348 148 HOH HOH A . B 2 HOH 149 349 149 HOH HOH A . B 2 HOH 150 350 150 HOH HOH A . B 2 HOH 151 351 151 HOH HOH A . B 2 HOH 152 352 152 HOH HOH A . B 2 HOH 153 353 153 HOH HOH A . B 2 HOH 154 354 154 HOH HOH A . B 2 HOH 155 355 155 HOH HOH A . B 2 HOH 156 356 156 HOH HOH A . B 2 HOH 157 357 157 HOH HOH A . B 2 HOH 158 358 158 HOH HOH A . B 2 HOH 159 359 159 HOH HOH A . B 2 HOH 160 360 160 HOH HOH A . B 2 HOH 161 361 161 HOH HOH A . #