HEADER PROTEIN BINDING 02-MAR-14 4PQD TITLE THE LONGER CRYSTAL STRUCTURE OF THE GROW FACTOR LIKE DOMAIN FROM BETA TITLE 2 AMYPOID PRECUSOR PROTEIN (APP22-126) COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMYLOID BETA A4 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: THE N-TERMINAL GFLD DOAMIN OF APP, UNP RESIDUES 22-126; COMPND 5 SYNONYM: ABPP, APPI, APP, ALZHEIMER DISEASE AMYLOID PROTEIN, CEREBRAL COMPND 6 VASCULAR AMYLOID PEPTIDE, CVAP, PREA4, PROTEASE NEXIN-II, PN-II, N- COMPND 7 APP, SOLUBLE APP-ALPHA, S-APP-ALPHA, SOLUBLE APP-BETA, S-APP-BETA, COMPND 8 C99, BETA-AMYLOID PROTEIN 42, BETA-APP42, BETA-AMYLOID PROTEIN 40, COMPND 9 BETA-APP40, C83, P3(42), P3(40), C80, GAMMA-SECRETASE C-TERMINAL COMPND 10 FRAGMENT 59, AMYLOID INTRACELLULAR DOMAIN 59, AICD-59, AID(59), COMPND 11 GAMMA-CTF(59), GAMMA-SECRETASE C-TERMINAL FRAGMENT 57, AMYLOID COMPND 12 INTRACELLULAR DOMAIN 57, AICD-57, AID(57), GAMMA-CTF(57), GAMMA- COMPND 13 SECRETASE C-TERMINAL FRAGMENT 50, AMYLOID INTRACELLULAR DOMAIN 50, COMPND 14 AICD-50, AID(50), GAMMA-CTF(50), C31; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APP, A4, AD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHAN AND BETA, GROWTH FACTOR, HEPARIN BINDING, PROTEIN BINDING, KEYWDS 2 ALZHEIMER'S DISEASE, DEATH RECEPTOR 6 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR X.TAN,W.LI,Z.WANG REVDAT 2 09-OCT-24 4PQD 1 REMARK REVDAT 1 08-APR-15 4PQD 0 JRNL AUTH X.TAN,W.LI,Z.WANG JRNL TITL MAPPING THE INTERACTION BETWWEN APP AND DR6 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 22664 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.820 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.2411 - 3.2079 0.93 1618 156 0.1804 0.1975 REMARK 3 2 3.2079 - 2.5468 1.00 1634 158 0.1740 0.1943 REMARK 3 3 2.5468 - 2.2250 1.00 1636 159 0.1655 0.1780 REMARK 3 4 2.2250 - 2.0216 1.00 1621 156 0.1532 0.1563 REMARK 3 5 2.0216 - 1.8768 1.00 1600 155 0.1572 0.2019 REMARK 3 6 1.8768 - 1.7661 1.00 1604 156 0.1661 0.1862 REMARK 3 7 1.7661 - 1.6777 1.00 1583 153 0.1658 0.1772 REMARK 3 8 1.6777 - 1.6047 1.00 1594 155 0.1692 0.1932 REMARK 3 9 1.6047 - 1.5429 1.00 1576 151 0.1635 0.1817 REMARK 3 10 1.5429 - 1.4897 0.99 1554 149 0.1694 0.1869 REMARK 3 11 1.4897 - 1.4431 0.91 1467 142 0.1773 0.1897 REMARK 3 12 1.4431 - 1.4019 0.80 1252 121 0.1772 0.1637 REMARK 3 13 1.4019 - 1.3650 0.68 1065 104 0.1716 0.2025 REMARK 3 14 1.3650 - 1.3317 0.54 862 83 0.1929 0.1843 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 846 REMARK 3 ANGLE : 1.104 1143 REMARK 3 CHIRALITY : 0.081 124 REMARK 3 PLANARITY : 0.005 151 REMARK 3 DIHEDRAL : 12.320 314 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.7127 5.2175 9.7527 REMARK 3 T TENSOR REMARK 3 T11: 0.2531 T22: 0.2892 REMARK 3 T33: 0.2962 T12: 0.0344 REMARK 3 T13: 0.0444 T23: -0.0695 REMARK 3 L TENSOR REMARK 3 L11: 4.2680 L22: 5.0709 REMARK 3 L33: 8.7089 L12: 4.3751 REMARK 3 L13: 1.4502 L23: -0.7138 REMARK 3 S TENSOR REMARK 3 S11: -0.0237 S12: 0.6671 S13: -0.7492 REMARK 3 S21: -0.4046 S22: 0.0363 S23: -0.7939 REMARK 3 S31: 0.9634 S32: 0.6774 S33: 0.0114 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1791 17.9023 16.5433 REMARK 3 T TENSOR REMARK 3 T11: 0.0682 T22: 0.0513 REMARK 3 T33: 0.0632 T12: -0.0145 REMARK 3 T13: 0.0066 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 2.8233 L22: 4.1140 REMARK 3 L33: 2.5568 L12: -1.7118 REMARK 3 L13: -1.5866 L23: 1.6649 REMARK 3 S TENSOR REMARK 3 S11: 0.0252 S12: -0.1138 S13: 0.2588 REMARK 3 S21: -0.0573 S22: 0.0279 S23: -0.0339 REMARK 3 S31: -0.0850 S32: -0.0956 S33: -0.0347 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.0549 12.8067 10.6486 REMARK 3 T TENSOR REMARK 3 T11: 0.0800 T22: 0.1306 REMARK 3 T33: 0.0793 T12: 0.0070 REMARK 3 T13: 0.0099 T23: -0.0300 REMARK 3 L TENSOR REMARK 3 L11: 5.3592 L22: 4.5021 REMARK 3 L33: 3.6499 L12: -2.3943 REMARK 3 L13: -0.6339 L23: 0.1502 REMARK 3 S TENSOR REMARK 3 S11: 0.1149 S12: 0.5535 S13: -0.1782 REMARK 3 S21: -0.3380 S22: -0.1615 S23: -0.0139 REMARK 3 S31: 0.1038 S32: 0.0381 S33: 0.0505 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3010 15.0618 20.1457 REMARK 3 T TENSOR REMARK 3 T11: 0.0822 T22: 0.1285 REMARK 3 T33: 0.1158 T12: -0.0085 REMARK 3 T13: 0.0108 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 2.1666 L22: 2.2052 REMARK 3 L33: 6.3676 L12: 0.9370 REMARK 3 L13: 2.7286 L23: 1.4544 REMARK 3 S TENSOR REMARK 3 S11: -0.0073 S12: -0.1229 S13: -0.0160 REMARK 3 S21: 0.0762 S22: -0.0394 S23: 0.3069 REMARK 3 S31: -0.0387 S32: -0.5486 S33: 0.0453 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7917 11.6685 25.5774 REMARK 3 T TENSOR REMARK 3 T11: 0.0610 T22: 0.0816 REMARK 3 T33: 0.0891 T12: -0.0086 REMARK 3 T13: 0.0143 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 2.7671 L22: 5.7161 REMARK 3 L33: 7.0719 L12: -2.5866 REMARK 3 L13: -1.6773 L23: 2.1126 REMARK 3 S TENSOR REMARK 3 S11: -0.0398 S12: -0.0911 S13: -0.1626 REMARK 3 S21: 0.2267 S22: 0.0037 S23: 0.1253 REMARK 3 S31: 0.0796 S32: 0.0215 S33: 0.0761 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.6318 14.9679 21.4978 REMARK 3 T TENSOR REMARK 3 T11: 0.0566 T22: 0.0772 REMARK 3 T33: 0.0767 T12: -0.0006 REMARK 3 T13: 0.0041 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.9524 L22: 3.2681 REMARK 3 L33: 2.1994 L12: -0.3635 REMARK 3 L13: 0.2775 L23: -1.4365 REMARK 3 S TENSOR REMARK 3 S11: -0.0389 S12: -0.0038 S13: 0.0031 REMARK 3 S21: 0.1554 S22: -0.0588 S23: -0.1791 REMARK 3 S31: -0.0573 S32: 0.1610 S33: 0.0905 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 95 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5629 20.1084 7.4759 REMARK 3 T TENSOR REMARK 3 T11: 0.2579 T22: 0.2328 REMARK 3 T33: 0.2068 T12: -0.0457 REMARK 3 T13: -0.0603 T23: 0.0382 REMARK 3 L TENSOR REMARK 3 L11: 4.2609 L22: 5.1311 REMARK 3 L33: 1.4274 L12: 4.1902 REMARK 3 L13: -1.0894 L23: -0.6624 REMARK 3 S TENSOR REMARK 3 S11: -0.5585 S12: 0.9280 S13: 0.2860 REMARK 3 S21: -0.9952 S22: 0.5385 S23: 0.6237 REMARK 3 S31: -0.0974 S32: -0.1978 S33: -0.0240 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 110 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.9748 13.2718 25.9261 REMARK 3 T TENSOR REMARK 3 T11: 0.0753 T22: 0.0561 REMARK 3 T33: 0.0579 T12: -0.0009 REMARK 3 T13: -0.0049 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 1.2881 L22: 2.8094 REMARK 3 L33: 3.2661 L12: -1.2474 REMARK 3 L13: 1.0648 L23: -2.2231 REMARK 3 S TENSOR REMARK 3 S11: 0.0546 S12: 0.0201 S13: -0.0412 REMARK 3 S21: 0.1516 S22: -0.0673 S23: 0.0335 REMARK 3 S31: 0.1317 S32: 0.1550 S33: 0.0371 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PQD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000085091. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22664 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.330 REMARK 200 RESOLUTION RANGE LOW (A) : 27.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 54.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60% V/V TACSIMATETM PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.37750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.57050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.51250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 32.57050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.37750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.51250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 295 O HOH A 296 1.82 REMARK 500 O HOH A 347 O HOH A 360 1.85 REMARK 500 O HOH A 217 O HOH A 221 1.96 REMARK 500 O HOH A 349 O HOH A 360 1.98 REMARK 500 O HOH A 253 O HOH A 254 2.00 REMARK 500 O HOH A 298 O HOH A 326 2.05 REMARK 500 O HOH A 249 O HOH A 295 2.05 REMARK 500 O HOH A 313 O HOH A 314 2.09 REMARK 500 O HOH A 254 O HOH A 285 2.12 REMARK 500 O HOH A 233 O HOH A 242 2.16 REMARK 500 O HOH A 284 O HOH A 321 2.19 REMARK 500 O HOH A 244 O HOH A 288 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 323 O HOH A 324 3755 1.73 REMARK 500 O HOH A 291 O HOH A 293 3645 1.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 25 82.91 -153.31 REMARK 500 THR A 61 -166.53 -115.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MWP RELATED DB: PDB REMARK 900 1MWP CONTAINS APP28-123, SHORTER THAN OUR STRUCTURE (APP22-126) DBREF 4PQD A 22 126 UNP P05067 A4_HUMAN 22 126 SEQRES 1 A 105 THR ASP GLY ASN ALA GLY LEU LEU ALA GLU PRO GLN ILE SEQRES 2 A 105 ALA MET PHE CYS GLY ARG LEU ASN MET HIS MET ASN VAL SEQRES 3 A 105 GLN ASN GLY LYS TRP ASP SER ASP PRO SER GLY THR LYS SEQRES 4 A 105 THR CYS ILE ASP THR LYS GLU GLY ILE LEU GLN TYR CYS SEQRES 5 A 105 GLN GLU VAL TYR PRO GLU LEU GLN ILE THR ASN VAL VAL SEQRES 6 A 105 GLU ALA ASN GLN PRO VAL THR ILE GLN ASN TRP CYS LYS SEQRES 7 A 105 ARG GLY ARG LYS GLN CYS LYS THR HIS PRO HIS PHE VAL SEQRES 8 A 105 ILE PRO TYR ARG CYS LEU VAL GLY GLU PHE VAL SER ASP SEQRES 9 A 105 ALA FORMUL 2 HOH *161(H2 O) HELIX 1 1 ASN A 25 LEU A 29 5 5 HELIX 2 2 THR A 65 TYR A 77 1 13 SHEET 1 A 5 TRP A 52 SER A 54 0 SHEET 2 A 5 MET A 43 MET A 45 -1 N HIS A 44 O ASP A 53 SHEET 3 A 5 GLN A 33 ALA A 35 -1 N ALA A 35 O MET A 43 SHEET 4 A 5 TYR A 115 VAL A 119 -1 O TYR A 115 N ILE A 34 SHEET 5 A 5 ILE A 82 GLU A 87 -1 N VAL A 86 O ARG A 116 SHEET 1 B 2 VAL A 92 ILE A 94 0 SHEET 2 B 2 HIS A 110 VAL A 112 -1 O VAL A 112 N VAL A 92 SHEET 1 C 2 TRP A 97 LYS A 99 0 SHEET 2 C 2 LYS A 103 LYS A 106 -1 O LYS A 103 N LYS A 99 SSBOND 1 CYS A 38 CYS A 62 1555 1555 2.04 SSBOND 2 CYS A 73 CYS A 117 1555 1555 2.09 SSBOND 3 CYS A 98 CYS A 105 1555 1555 2.04 CRYST1 32.755 49.025 65.141 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030530 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020398 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015351 0.00000