HEADER PHOTOSYNTHETIC REACTION CENTER 29-JUL-97 4PRC OBSLTE 13-MAR-07 4PRC 2JBL TITLE PHOTOSYNTHETIC REACTION CENTER FROM RHODOPSEUDOMONAS TITLE 2 VIRIDIS (STIGMATELLIN COMPLEX) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOTOSYNTHETIC REACTION CENTER; COMPND 3 CHAIN: C; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: PHOTOSYNTHETIC REACTION CENTER; COMPND 6 CHAIN: L; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: PHOTOSYNTHETIC REACTION CENTER; COMPND 9 CHAIN: M; COMPND 10 MOL_ID: 4; COMPND 11 MOLECULE: PHOTOSYNTHETIC REACTION CENTER; COMPND 12 CHAIN: H SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS VIRIDIS; SOURCE 3 COLLECTION: DSM 133; SOURCE 4 CELLULAR_LOCATION: INTRACYTOPLASMIC MEMBRANE (ICM); SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS VIRIDIS; SOURCE 7 COLLECTION: DSM 133; SOURCE 8 CELLULAR_LOCATION: INTRACYTOPLASMIC MEMBRANE (ICM); SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS VIRIDIS; SOURCE 11 ATCC: DSM 133; SOURCE 12 COLLECTION: DSM 133; SOURCE 13 CELLULAR_LOCATION: INTRACYTOPLASMIC MEMBRANE (ICM); SOURCE 14 MOL_ID: 4; SOURCE 15 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS VIRIDIS; SOURCE 16 COLLECTION: DSM 133; SOURCE 17 CELLULAR_LOCATION: INTRACYTOPLASMIC MEMBRANE (ICM) KEYWDS PHOTOSYNTHETIC REACTION CENTER, STIGMATELLIN EXPDTA X-RAY DIFFRACTION AUTHOR C.R.D.LANCASTER,H.MICHEL REVDAT 4 13-MAR-07 4PRC 1 OBSLTE REVDAT 3 01-APR-99 4PRC 1 HET HETNAM FORMUL HETATM REVDAT 3 2 1 REMARK REVDAT 2 25-FEB-99 4PRC 1 REMARK REVDAT 1 11-NOV-98 4PRC 0 JRNL AUTH C.R.LANCASTER,H.MICHEL JRNL TITL THE COUPLING OF LIGHT-INDUCED ELECTRON TRANSFER JRNL TITL 2 AND PROTON UPTAKE AS DERIVED FROM CRYSTAL JRNL TITL 3 STRUCTURES OF REACTION CENTRES FROM JRNL TITL 4 RHODOPSEUDOMONAS VIRIDIS MODIFIED AT THE BINDING JRNL TITL 5 SITE OF THE SECONDARY QUINONE, QB. JRNL REF STRUCTURE V. 5 1339 1997 JRNL REFN ASTM STRUE6 UK ISSN 0969-2126 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 TITL REFINED CRYSTAL STRUCTURES OF REACTION CENTRES REMARK 1 TITL 2 FROM RHODOPSEUDOMONAS VIRIDIS IN COMPLEXES WITH REMARK 1 TITL 3 THE HERBICIDE ATRAZINE AND TWO CHIRAL ATRAZINE REMARK 1 TITL 4 DERIVATIVES ALSO LEAD TO A NEW MODEL OF THE BOUND REMARK 1 TITL 5 CAROTENOID REMARK 1 REF J.MOL.BIOL. V. 286 883 1999 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.R.D.LANCASTER REMARK 1 TITL UBIQUINONE REDUCTION AND PROTONATION IN THE REMARK 1 TITL 2 REACTION CENTRE OF RHODOPSEUDOMONAS VIRIDIS: X-RAY REMARK 1 TITL 3 STRUCTURES AND THEIR FUNCTIONAL IMPLICATIONS REMARK 1 REF BIOCHIM.BIOPHYS.ACTA V.1365 143 1998 REMARK 1 REFN ASTM BBACAQ NE ISSN 0006-3002 REMARK 1 REFERENCE 3 REMARK 1 AUTH J.DEISENHOFER,O.EPP,I.SINNING,H.MICHEL REMARK 1 TITL CRYSTALLOGRAPHIC REFINEMENT AT 2.3 A RESOLUTION REMARK 1 TITL 2 AND REFINED MODEL OF THE PHOTOSYNTHETIC REACTION REMARK 1 TITL 3 CENTRE FROM RHODOPSEUDOMONAS VIRIDIS REMARK 1 REF J.MOL.BIOL. V. 246 429 1995 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REFERENCE 4 REMARK 1 AUTH J.DEISENHOFER,H.MICHEL REMARK 1 TITL THE PHOTOSYNTHETIC REACTION CENTER FROM THE PURPLE REMARK 1 TITL 2 BACTERIUM RHODOPSEUDOMONAS VIRIDIS REMARK 1 REF SCIENCE V. 245 1463 1989 REMARK 1 REFN ASTM SCIEAS US ISSN 0036-8075 REMARK 1 REFERENCE 5 REMARK 1 AUTH J.DEISENHOFER,O.EPP,K.MIKI,R.HUBER,H.MICHEL REMARK 1 TITL STRUCTURE OF THE PROTEIN SUBUNITS IN THE REMARK 1 TITL 2 PHOTOSYNTHETIC REACTION CENTRE OF RHODOPSEUDOMONAS REMARK 1 TITL 3 VIRIDIS AT 3 ANGSTROMS RESOLUTION REMARK 1 REF NATURE V. 318 618 1985 REMARK 1 REFN ASTM NATUAS UK ISSN 0028-0836 REMARK 1 REFERENCE 6 REMARK 1 AUTH J.DEISENHOFER,O.EPP,K.MIKI,R.HUBER,H.MICHEL REMARK 1 TITL X-RAY STRUCTURE ANALYSIS OF A MEMBRANE PROTEIN REMARK 1 TITL 2 COMPLEX. ELECTRON DENSITY MAP AT 3 A RESOLUTION REMARK 1 TITL 3 AND A MODEL OF THE CHROMOPHORES OF THE REMARK 1 TITL 4 PHOTOSYNTHETIC REACTION CENTER FROM REMARK 1 TITL 5 RHODOPSEUDOMONAS VIRIDIS REMARK 1 REF J.MOL.BIOL. V. 180 385 1984 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REFERENCE 7 REMARK 1 AUTH H.MICHEL REMARK 1 TITL THREE-DIMENSIONAL CRYSTALS OF A MEMBRANE PROTEIN REMARK 1 TITL 2 COMPLEX. THE PHOTOSYNTHETIC REACTION CENTRE FROM REMARK 1 TITL 3 RHODOPSEUDOMONAS VIRIDIS REMARK 1 REF J.MOL.BIOL. V. 158 567 1982 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 69.4 REMARK 3 NUMBER OF REFLECTIONS : 76640 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : A POSTERIORI REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7735 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 45.87 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5669 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 595 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9393 REMARK 3 NUCLEIC ACID ATOMS : NULL REMARK 3 HETEROGEN ATOMS : 808 REMARK 3 SOLVENT ATOMS : 328 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.47 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.45 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX_TEST.PRO REMARK 3 PARAMETER FILE 2 : PARAM19.ION REMARK 3 PARAMETER FILE 3 : PARHCSDX_IUB.RCV REMARK 3 PARAMETER FILE 4 : PARAM19.SOL TOPHCSDX_NEW. REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH19.ION REMARK 3 TOPOLOGY FILE 3 : TOPHCSDX_IUB.RCV REMARK 3 TOPOLOGY FILE 4 : TOPH19.SOL PARHCSDX.STG REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: N(OBS)/N(PAR) = 1.82 REMARK 4 REMARK 4 4PRC COMPLIES WITH FORMAT V. 3.0, 1-DEC-2006 REMARK 4 REMARK 4 THIS IS THE REMEDIATED VERSION OF THIS PDB ENTRY. REMARK 4 REMEDIATED DATA FILE REVISION 3.101 (2007-05-29) REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-1992 REMARK 200 TEMPERATURE (KELVIN) : 263.0 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : 5 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : BENT SINGLE-CRYSTAL GERMANIUM REMARK 200 TRIANGULAR MONOCHROMATOR REMARK 200 OPTICS : FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (ROTAVATA, AGROVATA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78068 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 69.6 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : 0.08200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 45.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.30 REMARK 200 R MERGE FOR SHELL (I) : 0.24000 REMARK 200 R SYM FOR SHELL (I) : 0.24000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIFFERENCE FOURIER AND REMARK 200 SA OMIT MAPS REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: PDB ENTRY 2PRC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,1/2+Z REMARK 290 3555 1/2-Y,1/2+X,3/4+Z REMARK 290 4555 1/2+Y,1/2-X,1/4+Z REMARK 290 5555 1/2-X,1/2+Y,3/4-Z REMARK 290 6555 1/2+X,1/2-Y,1/4-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,1/2-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.80000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 111.75000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 111.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 85.20000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 111.75000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 111.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.40000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 111.75000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 111.75000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 85.20000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 111.75000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 111.75000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.40000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.80000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 4 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, L, M, H, X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH 186 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA C 333 REMARK 465 ALA C 334 REMARK 465 ALA C 335 REMARK 465 LYS C 336 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 332 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO L 118 CB PRO L 118 CG 0.070 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 6 C - N - CD ANGL. DEV. =-11.5 DEGREES REMARK 500 LEU C 71 CA - CB - CG ANGL. DEV. = -9.3 DEGREES REMARK 500 PRO C 103 C - N - CD ANGL. DEV. = 7.7 DEGREES REMARK 500 LEU C 240 CA - CB - CG ANGL. DEV. = 8.2 DEGREES REMARK 500 ILE C 266 CG1 - CB - CG2 ANGL. DEV. = -7.8 DEGREES REMARK 500 PRO L 260 C - N - CD ANGL. DEV. = 7.7 DEGREES REMARK 500 LEU M 67 CA - CB - CG ANGL. DEV. = -8.0 DEGREES REMARK 500 LEU M 248 CA - CB - CG ANGL. DEV. = -8.0 DEGREES REMARK 500 PRO H 42 C - N - CD ANGL. DEV. =-19.8 DEGREES REMARK 500 GLU H 45 CB - CA - C ANGL. DEV. =-11.4 DEGREES REMARK 500 ALA H 53 CB - CA - C ANGL. DEV. =-10.6 DEGREES REMARK 500 ALA H 53 N - CA - C ANGL. DEV. = 8.6 DEGREES REMARK 500 ASP H 174 N - CA - C ANGL. DEV. = -8.0 DEGREES REMARK 500 LEU H 198 CA - CB - CG ANGL. DEV. = -8.4 DEGREES REMARK 500 LEU H 247 CA - CB - CG ANGL. DEV. = -8.3 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU L 165 -64.85 65.90 DBREF 4PRC C 1 336 UNP P07173 CYCR_RHOVI 21 356 DBREF 4PRC L 1 273 UNP P06009 RCEL_RHOVI 1 273 DBREF 4PRC M 1 323 UNP P06010 RCEM_RHOVI 1 323 DBREF 4PRC H 2 258 UNP P06008 RCEH_RHOVI 2 258 SEQRES 1 C 336 CYS PHE GLU PRO PRO PRO ALA THR THR THR GLN THR GLY SEQRES 2 C 336 PHE ARG GLY LEU SER MET GLY GLU VAL LEU HIS PRO ALA SEQRES 3 C 336 THR VAL LYS ALA LYS LYS GLU ARG ASP ALA GLN TYR PRO SEQRES 4 C 336 PRO ALA LEU ALA ALA VAL LYS ALA GLU GLY PRO PRO VAL SEQRES 5 C 336 SER GLN VAL TYR LYS ASN VAL LYS VAL LEU GLY ASN LEU SEQRES 6 C 336 THR GLU ALA GLU PHE LEU ARG THR MET THR ALA ILE THR SEQRES 7 C 336 GLU TRP VAL SER PRO GLN GLU GLY CYS THR TYR CYS HIS SEQRES 8 C 336 ASP GLU ASN ASN LEU ALA SER GLU ALA LYS TYR PRO TYR SEQRES 9 C 336 VAL VAL ALA ARG ARG MET LEU GLU MET THR ARG ALA ILE SEQRES 10 C 336 ASN THR ASN TRP THR GLN HIS VAL ALA GLN THR GLY VAL SEQRES 11 C 336 THR CYS TYR THR CYS HIS ARG GLY THR PRO LEU PRO PRO SEQRES 12 C 336 TYR VAL ARG TYR LEU GLU PRO THR LEU PRO LEU ASN ASN SEQRES 13 C 336 ARG GLU THR PRO THR HIS VAL GLU ARG VAL GLU THR ARG SEQRES 14 C 336 SER GLY TYR VAL VAL ARG LEU ALA LYS TYR THR ALA TYR SEQRES 15 C 336 SER ALA LEU ASN TYR ASP PRO PHE THR MET PHE LEU ALA SEQRES 16 C 336 ASN ASP LYS ARG GLN VAL ARG VAL VAL PRO GLN THR ALA SEQRES 17 C 336 LEU PRO LEU VAL GLY VAL SER ARG GLY LYS GLU ARG ARG SEQRES 18 C 336 PRO LEU SER ASP ALA TYR ALA THR PHE ALA LEU MET MET SEQRES 19 C 336 SER ILE SER ASP SER LEU GLY THR ASN CYS THR PHE CYS SEQRES 20 C 336 HIS ASN ALA GLN THR PHE GLU SER TRP GLY LYS LYS SER SEQRES 21 C 336 THR PRO GLN ARG ALA ILE ALA TRP TRP GLY ILE ARG MET SEQRES 22 C 336 VAL ARG ASP LEU ASN MET ASN TYR LEU ALA PRO LEU ASN SEQRES 23 C 336 ALA SER LEU PRO ALA SER ARG LEU GLY ARG GLN GLY GLU SEQRES 24 C 336 ALA PRO GLN ALA ASP CYS ARG THR CYS HIS GLN GLY VAL SEQRES 25 C 336 THR LYS PRO LEU PHE GLY ALA SER ARG LEU LYS ASP TYR SEQRES 26 C 336 PRO GLU LEU GLY PRO ILE LYS ALA ALA ALA LYS SEQRES 1 L 273 ALA LEU LEU SER PHE GLU ARG LYS TYR ARG VAL ARG GLY SEQRES 2 L 273 GLY THR LEU ILE GLY GLY ASP LEU PHE ASP PHE TRP VAL SEQRES 3 L 273 GLY PRO TYR PHE VAL GLY PHE PHE GLY VAL SER ALA ILE SEQRES 4 L 273 PHE PHE ILE PHE LEU GLY VAL SER LEU ILE GLY TYR ALA SEQRES 5 L 273 ALA SER GLN GLY PRO THR TRP ASP PRO PHE ALA ILE SER SEQRES 6 L 273 ILE ASN PRO PRO ASP LEU LYS TYR GLY LEU GLY ALA ALA SEQRES 7 L 273 PRO LEU LEU GLU GLY GLY PHE TRP GLN ALA ILE THR VAL SEQRES 8 L 273 CYS ALA LEU GLY ALA PHE ILE SER TRP MET LEU ARG GLU SEQRES 9 L 273 VAL GLU ILE SER ARG LYS LEU GLY ILE GLY TRP HIS VAL SEQRES 10 L 273 PRO LEU ALA PHE CYS VAL PRO ILE PHE MET PHE CYS VAL SEQRES 11 L 273 LEU GLN VAL PHE ARG PRO LEU LEU LEU GLY SER TRP GLY SEQRES 12 L 273 HIS ALA PHE PRO TYR GLY ILE LEU SER HIS LEU ASP TRP SEQRES 13 L 273 VAL ASN ASN PHE GLY TYR GLN TYR LEU ASN TRP HIS TYR SEQRES 14 L 273 ASN PRO GLY HIS MET SER SER VAL SER PHE LEU PHE VAL SEQRES 15 L 273 ASN ALA MET ALA LEU GLY LEU HIS GLY GLY LEU ILE LEU SEQRES 16 L 273 SER VAL ALA ASN PRO GLY ASP GLY ASP LYS VAL LYS THR SEQRES 17 L 273 ALA GLU HIS GLU ASN GLN TYR PHE ARG ASP VAL VAL GLY SEQRES 18 L 273 TYR SER ILE GLY ALA LEU SER ILE HIS ARG LEU GLY LEU SEQRES 19 L 273 PHE LEU ALA SER ASN ILE PHE LEU THR GLY ALA PHE GLY SEQRES 20 L 273 THR ILE ALA SER GLY PRO PHE TRP THR ARG GLY TRP PRO SEQRES 21 L 273 GLU TRP TRP GLY TRP TRP LEU ASP ILE PRO PHE TRP SER SEQRES 1 M 323 ALA ASP TYR GLN THR ILE TYR THR GLN ILE GLN ALA ARG SEQRES 2 M 323 GLY PRO HIS ILE THR VAL SER GLY GLU TRP GLY ASP ASN SEQRES 3 M 323 ASP ARG VAL GLY LYS PRO PHE TYR SER TYR TRP LEU GLY SEQRES 4 M 323 LYS ILE GLY ASP ALA GLN ILE GLY PRO ILE TYR LEU GLY SEQRES 5 M 323 ALA SER GLY ILE ALA ALA PHE ALA PHE GLY SER THR ALA SEQRES 6 M 323 ILE LEU ILE ILE LEU PHE ASN MET ALA ALA GLU VAL HIS SEQRES 7 M 323 PHE ASP PRO LEU GLN PHE PHE ARG GLN PHE PHE TRP LEU SEQRES 8 M 323 GLY LEU TYR PRO PRO LYS ALA GLN TYR GLY MET GLY ILE SEQRES 9 M 323 PRO PRO LEU HIS ASP GLY GLY TRP TRP LEU MET ALA GLY SEQRES 10 M 323 LEU PHE MET THR LEU SER LEU GLY SER TRP TRP ILE ARG SEQRES 11 M 323 VAL TYR SER ARG ALA ARG ALA LEU GLY LEU GLY THR HIS SEQRES 12 M 323 ILE ALA TRP ASN PHE ALA ALA ALA ILE PHE PHE VAL LEU SEQRES 13 M 323 CYS ILE GLY CYS ILE HIS PRO THR LEU VAL GLY SER TRP SEQRES 14 M 323 SER GLU GLY VAL PRO PHE GLY ILE TRP PRO HIS ILE ASP SEQRES 15 M 323 TRP LEU THR ALA PHE SER ILE ARG TYR GLY ASN PHE TYR SEQRES 16 M 323 TYR CYS PRO TRP HIS GLY PHE SER ILE GLY PHE ALA TYR SEQRES 17 M 323 GLY CYS GLY LEU LEU PHE ALA ALA HIS GLY ALA THR ILE SEQRES 18 M 323 LEU ALA VAL ALA ARG PHE GLY GLY ASP ARG GLU ILE GLU SEQRES 19 M 323 GLN ILE THR ASP ARG GLY THR ALA VAL GLU ARG ALA ALA SEQRES 20 M 323 LEU PHE TRP ARG TRP THR ILE GLY PHE ASN ALA THR ILE SEQRES 21 M 323 GLU SER VAL HIS ARG TRP GLY TRP PHE PHE SER LEU MET SEQRES 22 M 323 VAL MET VAL SER ALA SER VAL GLY ILE LEU LEU THR GLY SEQRES 23 M 323 THR PHE VAL ASP ASN TRP TYR LEU TRP CYS VAL LYS HIS SEQRES 24 M 323 GLY ALA ALA PRO ASP TYR PRO ALA TYR LEU PRO ALA THR SEQRES 25 M 323 PRO ASP PRO ALA SER LEU PRO GLY ALA PRO LYS SEQRES 1 H 258 FME TYR HIS GLY ALA LEU ALA GLN HIS LEU ASP ILE ALA SEQRES 2 H 258 GLN LEU VAL TRP TYR ALA GLN TRP LEU VAL ILE TRP THR SEQRES 3 H 258 VAL VAL LEU LEU TYR LEU ARG ARG GLU ASP ARG ARG GLU SEQRES 4 H 258 GLY TYR PRO LEU VAL GLU PRO LEU GLY LEU VAL LYS LEU SEQRES 5 H 258 ALA PRO GLU ASP GLY GLN VAL TYR GLU LEU PRO TYR PRO SEQRES 6 H 258 LYS THR PHE VAL LEU PRO HIS GLY GLY THR VAL THR VAL SEQRES 7 H 258 PRO ARG ARG ARG PRO GLU THR ARG GLU LEU LYS LEU ALA SEQRES 8 H 258 GLN THR ASP GLY PHE GLU GLY ALA PRO LEU GLN PRO THR SEQRES 9 H 258 GLY ASN PRO LEU VAL ASP ALA VAL GLY PRO ALA SER TYR SEQRES 10 H 258 ALA GLU ARG ALA GLU VAL VAL ASP ALA THR VAL ASP GLY SEQRES 11 H 258 LYS ALA LYS ILE VAL PRO LEU ARG VAL ALA THR ASP PHE SEQRES 12 H 258 SER ILE ALA GLU GLY ASP VAL ASP PRO ARG GLY LEU PRO SEQRES 13 H 258 VAL VAL ALA ALA ASP GLY VAL GLU ALA GLY THR VAL THR SEQRES 14 H 258 ASP LEU TRP VAL ASP ARG SER GLU HIS TYR PHE ARG TYR SEQRES 15 H 258 LEU GLU LEU SER VAL ALA GLY SER ALA ARG THR ALA LEU SEQRES 16 H 258 ILE PRO LEU GLY PHE CYS ASP VAL LYS LYS ASP LYS ILE SEQRES 17 H 258 VAL VAL THR SER ILE LEU SER GLU GLN PHE ALA ASN VAL SEQRES 18 H 258 PRO ARG LEU GLN SER ARG ASP GLN ILE THR LEU ARG GLU SEQRES 19 H 258 GLU ASP LYS VAL SER ALA TYR TYR ALA GLY GLY LEU LEU SEQRES 20 H 258 TYR ALA THR PRO GLU ARG ALA GLU SER LEU LEU MODRES 4PRC FME H 1 MET FORMYL-METHIONINE HET FME H 1 10 HET FE2 500 1 HET SO4 801 5 HET SO4 802 5 HET SO4 803 5 HET SO4 804 5 HET BCB 301 66 HET BCB 302 66 HET BCB 303 66 HET BCB 304 66 HET BPB 401 65 HET BPB 402 65 HET MQ7 501 48 HET HEM 201 43 HET HEM 202 43 HET HEM 203 43 HET HEM 204 43 HET NS5 600 40 HET SMA X 502 37 HET LDA 701 16 HET LDA 702 16 HET LDA 703 16 HET LDA 704 16 HET LDA 705 16 HET LDA 706 16 HETNAM FME N-FORMYLMETHIONINE HETNAM FE2 FE (II) ION HETNAM SO4 SULFATE ION HETNAM BCB BACTERIOCHLOROPHYLL B HETNAM BPB BACTERIOPHEOPHYTIN B HETNAM MQ7 MENAQUINONE-7 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM NS5 DIHYDRO-NEUROSPORENE HETNAM SMA STIGMATELLIN A HETNAM LDA LAURYL DIMETHYLAMINE-N-OXIDE HETSYN HEM HEME FORMUL 4 FME C6 H11 N O3 S FORMUL 5 FE2 FE 2+ FORMUL 6 SO4 4(O4 S 2-) FORMUL 10 BCB 4(C55 H72 MG N4 O6) FORMUL 14 BPB 2(C55 H76 N4 O6) FORMUL 16 MQ7 C46 H64 O2 FORMUL 17 HEM 4(C34 H32 FE N4 O4) FORMUL 21 NS5 C40 H62 FORMUL 22 SMA C30 H42 O7 FORMUL 23 LDA 6(C14 H31 N O) FORMUL 29 HOH *328(H2 O) HELIX 1 1 PRO C 25 GLN C 37 1(N-TERMINAL HELIX) 13 HELIX 2 2 GLU C 67 VAL C 81 1(HAEM 1 - ASSOCIATED HELIX) 15 HELIX 3 3 TYR C 102 ASN C 120 1(HAEM 2 - ASSOCIATED HELIX) 19 HELIX 4 4 CYS C 132 HIS C 136 1(HAEM 2 ATTACHMENT SITE) 5 HELIX 5 5 ARG C 169 TYR C 179 5 11 HELIX 6 6 PRO C 189 PHE C 193 1 5 HELIX 7 7 LEU C 223 SER C 239 5(HAEM 3 - ASSOCIATED HELIX) 17 HELIX 8 8 PRO C 262 ASN C 280 1(HAEM 4 - ASSOCIATED HELIX) 19 HELIX 9 9 ALA C 283 SER C 288 5 6 HELIX 10 10 CYS C 305 HIS C 309 1(HAEM 4 ATTACHMENT SITE) 5 HELIX 11 LA GLY L 32 GLN L 55 1(TRANSMEMBRANE HELIX LA) 24 HELIX 12 LB GLY L 84 LEU L 111 1(TRANSMEMBRANE HELIX LB) 28 HELIX 13 LC HIS L 116 LEU L 139 1(TRANSMEMBRANE HELIX LC) 24 HELIX 14 LCD SER L 152 TYR L 164 1(PERIPLASMIC HELIX LCD) 13 HELIX 15 LD PRO L 171 ALA L 198 1(TRANSMEMBRANE HELIX LD) 28 HELIX 16 LDE ALA L 209 VAL L 220 1(CYTOPLASMIC HELIX LDE) 12 HELIX 17 LE ALA L 226 PRO L 253 1(TRANSMEMBRANE HELIX LE) 28 HELIX 18 18 PRO L 260 LEU L 267 5(PERIPLASMIC C-TERM HELIX) 8 HELIX 19 MA ALA M 53 GLU M 76 1(TRANSMEMBRANE HELIX MA) 24 HELIX 20 MAB PRO M 81 TRP M 90 1(PERIPLASMIC HELIX MAB) 10 HELIX 21 MB GLY M 111 LEU M 138 1(TRANSMEMBRANE HELIX MB) 28 HELIX 22 MC HIS M 143 VAL M 166 1(TRANSMEMBRANE HELIX MC) 24 HELIX 23 23 ILE M 177 ARG M 190 1 14 HELIX 24 MD PRO M 198 PHE M 227 5(TRANSMEMBRANE HELIX MD) 30 HELIX 25 25 GLU M 232 THR M 237 1(CYTOPLASMIC HELIX) 6 HELIX 26 MDE THR M 241 ILE M 254 1(CYTOPLASMIC HELIX MDE) 14 HELIX 27 ME SER M 262 LEU M 284 1(TRANSMEMBRANE HELIX ME) 23 HELIX 28 28 TRP M 292 HIS M 299 1(PERIPLASMIC C-TERM HELIX) 8 HELIX 29 29 ILE H 12 LEU H 30 1(TRANSMEMBRANE HELIX) 19 HELIX 30 30 LEU H 32 ARG H 37 1(PI-HELIX EXTENSION) 6 HELIX 31 31 ASP H 56 TYR H 60 1(SHORT HELIX) 5 HELIX 32 32 PRO H 107 ASP H 110 1(SHORT HELIX) 4 HELIX 33 33 SER H 215 ASN H 220 5(SHORT HELIX) 6 HELIX 34 34 LEU H 232 TYR H 248 1(C-TERMINAL HELIX) 17 SHEET 1 A 2 ALA C 7 THR C 9 0 SHEET 2 A 2 VAL C 22 HIS C 24 -1 N LEU C 23 O THR C 8 SHEET 1 B 2 LYS H 66 VAL H 69 0 SHEET 2 B 2 THR H 75 VAL H 78 -1 N VAL H 78 O LYS H 66 SHEET 1 C 2 LEU H 90 GLN H 92 0 SHEET 2 C 2 LEU H 101 PRO H 103 -1 N GLN H 102 O ALA H 91 SHEET 1 D 4 ILE H 134 PRO H 136 0 SHEET 2 D 4 GLY H 166 ASP H 174 -1 N VAL H 173 O VAL H 135 SHEET 3 D 4 TYR H 182 VAL H 187 -1 N SER H 186 O THR H 167 SHEET 4 D 4 THR H 193 PRO H 197 -1 N ILE H 196 O LEU H 183 SHEET 1 E 3 LYS H 207 VAL H 209 0 SHEET 2 E 3 PRO H 156 VAL H 158 1 N PRO H 156 O ILE H 208 SHEET 3 E 3 GLU H 164 THR H 167 -1 N GLY H 166 O VAL H 157 LINK C FME H 1 N TYR H 2 LINK MG BCB 301 NE2 HIS M 180 LINK MG BCB 302 NE2 HIS L 173 LINK MG BCB 303 NE2 HIS M 200 LINK MG BCB 304 NE2 HIS L 153 LINK FE FE2 500 NE2 HIS L 190 LINK FE FE2 500 NE2 HIS L 230 LINK FE FE2 500 NE2 HIS M 217 LINK FE FE2 500 OE1 GLU M 232 LINK FE FE2 500 OE2 GLU M 232 LINK FE FE2 500 NE2 HIS M 264 LINK FE HEM 201 SD MET C 74 LINK FE HEM 201 NE2 HIS C 91 LINK CAB HEM 201 SG CYS C 87 LINK CAC HEM 201 SG CYS C 90 LINK FE HEM 202 SD MET C 110 LINK FE HEM 202 NE2 HIS C 136 LINK CAB HEM 202 SG CYS C 132 LINK CAC HEM 202 SG CYS C 135 LINK FE HEM 203 SD MET C 233 LINK FE HEM 203 NE2 HIS C 248 LINK CAB HEM 203 SG CYS C 244 LINK CAC HEM 203 SG CYS C 247 LINK FE HEM 204 NE2 HIS C 124 LINK FE HEM 204 NE2 HIS C 309 LINK CAB HEM 204 SG CYS C 305 LINK CAC HEM 204 SG CYS C 308 CISPEP 1 PRO C 5 PRO C 6 0 2.57 CISPEP 2 LEU C 152 PRO C 153 0 -3.46 CISPEP 3 GLY C 329 PRO C 330 0 9.18 CISPEP 4 GLY M 47 PRO M 48 0 -5.34 CISPEP 5 TYR H 41 PRO H 42 0 6.25 CISPEP 6 VAL H 78 PRO H 79 0 3.29 CRYST1 223.500 223.500 113.600 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004474 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004474 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008803 0.00000