HEADER HYDROLASE 06-MAR-14 4PRU TITLE CRYSTAL STRUCTURE OF DIMETHYLLYSINE HEN EGG-WHITE LYSOZYME IN COMPLEX TITLE 2 WITH SCLX4 AT 2.2 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C, ALLERGEN GAL D IV; COMPND 5 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: BANTAM,CHICKENS; SOURCE 4 ORGANISM_TAXID: 9031 KEYWDS HYDROLASE(O-GLYCOSYL), HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.E.MCGOVERN,J.A.LYONS,P.B.CROWLEY REVDAT 3 20-SEP-23 4PRU 1 REMARK LINK REVDAT 2 21-JAN-15 4PRU 1 JRNL REVDAT 1 12-NOV-14 4PRU 0 JRNL AUTH R.E.MCGOVERN,B.D.SNARR,J.A.LYONS,J.MCFARLANE,A.L.WHITING, JRNL AUTH 2 I.PACI,F.HOF,P.B.CROWLEY JRNL TITL STRUCTURAL STUDY OF A SMALL MOLECULE RECEPTOR BOUND TO JRNL TITL 2 DIMETHYLLYSINE IN LYSOZYME. JRNL REF CHEM SCI V. 6 442 2015 JRNL REFN ISSN 2041-6520 JRNL PMID 25530835 JRNL DOI 10.1039/C4SC02383H REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 12880 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 670 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 898 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2030 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 204 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.31000 REMARK 3 B22 (A**2) : -0.34000 REMARK 3 B33 (A**2) : 0.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.20000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.329 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.225 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.156 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.130 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2307 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 8 ; 0.047 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3185 ; 1.525 ; 1.844 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16 ; 1.385 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 260 ; 6.539 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 101 ;34.001 ;23.069 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 286 ;13.661 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;17.237 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 322 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1760 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PRU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000085141. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03319 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13557 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 39.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.15600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.73400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4PQR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18 % PEG 8000 100 MM MAGNESIUM REMARK 280 CHLORIDE, 50 MM SODIUM CHLORIDE, 50 MM SODIUM CACODYLATE PH 6.3, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15 K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 15.14000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 14 O HOH A 340 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 347 O HOH B 315 1565 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 18 109.04 -53.60 REMARK 500 ARG B 128 94.88 -59.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE T3Y A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE T3Y A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE T3Y B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE T3Y B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4N0J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HEN EGG WHITE LYSOZYME IN COMPLEX WITH SCLX4 REMARK 900 AT 1.9 A RESOLUTION REMARK 900 RELATED ID: 4PRQ RELATED DB: PDB DBREF 4PRU A 1 129 UNP P00698 LYSC_CHICK 19 147 DBREF 4PRU B 1 129 UNP P00698 LYSC_CHICK 19 147 SEQRES 1 A 129 DM0 VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET MLY SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA MLY PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA MLY MLY ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS MLY GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU SEQRES 1 B 129 DM0 VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET MLY SEQRES 2 B 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 B 129 ASN TRP VAL CYS ALA ALA MLY PHE GLU SER ASN PHE ASN SEQRES 4 B 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 B 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 B 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 B 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 B 129 VAL ASN CYS ALA MLY MLY ILE VAL SER ASP GLY ASN GLY SEQRES 9 B 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS MLY GLY SEQRES 10 B 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU MODRES 4PRU DM0 A 1 LYS MODRES 4PRU MLY A 13 LYS N-DIMETHYL-LYSINE MODRES 4PRU MLY A 33 LYS N-DIMETHYL-LYSINE MODRES 4PRU MLY A 96 LYS N-DIMETHYL-LYSINE MODRES 4PRU MLY A 97 LYS N-DIMETHYL-LYSINE MODRES 4PRU MLY A 116 LYS N-DIMETHYL-LYSINE MODRES 4PRU DM0 B 1 LYS MODRES 4PRU MLY B 13 LYS N-DIMETHYL-LYSINE MODRES 4PRU MLY B 33 LYS N-DIMETHYL-LYSINE MODRES 4PRU MLY B 96 LYS N-DIMETHYL-LYSINE MODRES 4PRU MLY B 97 LYS N-DIMETHYL-LYSINE MODRES 4PRU MLY B 116 LYS N-DIMETHYL-LYSINE HET DM0 A 1 13 HET MLY A 13 11 HET MLY A 33 11 HET MLY A 96 11 HET MLY A 97 11 HET MLY A 116 11 HET DM0 B 1 13 HET MLY B 13 11 HET MLY B 33 11 HET MLY B 96 11 HET MLY B 97 11 HET MLY B 116 11 HET T3Y A 201 48 HET T3Y A 202 48 HET GOL A 203 6 HET GOL A 204 6 HET T3Y B 201 48 HET T3Y B 202 48 HETNAM DM0 N~2~,N~2~,N~6~,N~6~-TETRAMETHYL-L-LYSINE HETNAM MLY N-DIMETHYL-LYSINE HETNAM T3Y 25,26,27,28-TETRAHYDROXYPENTACYCLO[19.3.1.1~3,7~.1~9, HETNAM 2 T3Y 13~.1~15,19~]OCTACOSA-1(25),3(28),4,6,9(27),10,12, HETNAM 3 T3Y 15(26),16,18,21,23-DODECAENE-5,11,17,23-TETRASULFONIC HETNAM 4 T3Y ACID HETNAM GOL GLYCEROL HETSYN T3Y 5,11,17,23-TETRA-SULPHONATO-CALIX[4]ARENE-25,26,27,28- HETSYN 2 T3Y TETROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 DM0 2(C10 H22 N2 O2) FORMUL 1 MLY 10(C8 H18 N2 O2) FORMUL 3 T3Y 4(C28 H24 O16 S4) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 9 HOH *97(H2 O) HELIX 1 1 GLY A 4 HIS A 15 1 12 HELIX 2 2 ASN A 19 TYR A 23 5 5 HELIX 3 3 SER A 24 ASN A 37 1 14 HELIX 4 4 PRO A 79 SER A 85 5 7 HELIX 5 5 ILE A 88 ASP A 101 1 14 HELIX 6 6 TRP A 108 CYS A 115 1 8 HELIX 7 7 ASP A 119 ILE A 124 5 6 HELIX 8 8 GLY B 4 HIS B 15 1 12 HELIX 9 9 ASN B 19 TYR B 23 5 5 HELIX 10 10 SER B 24 ASN B 37 1 14 HELIX 11 11 PRO B 79 SER B 85 5 7 HELIX 12 12 ILE B 88 GLY B 102 1 15 HELIX 13 13 GLY B 104 ALA B 107 5 4 HELIX 14 14 TRP B 108 CYS B 115 1 8 HELIX 15 15 ASP B 119 ILE B 124 5 6 SHEET 1 A 3 THR A 43 ARG A 45 0 SHEET 2 A 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44 SHEET 3 A 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SHEET 1 B 3 THR B 43 ARG B 45 0 SHEET 2 B 3 THR B 51 TYR B 53 -1 O ASP B 52 N ASN B 44 SHEET 3 B 3 ILE B 58 ASN B 59 -1 O ILE B 58 N TYR B 53 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.06 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.03 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.04 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.07 SSBOND 5 CYS B 6 CYS B 127 1555 1555 2.07 SSBOND 6 CYS B 30 CYS B 115 1555 1555 2.04 SSBOND 7 CYS B 64 CYS B 80 1555 1555 2.07 SSBOND 8 CYS B 76 CYS B 94 1555 1555 2.08 LINK C DM0 A 1 N VAL A 2 1555 1555 1.32 LINK C MET A 12 N MLY A 13 1555 1555 1.34 LINK C MLY A 13 N ARG A 14 1555 1555 1.33 LINK C ALA A 32 N MLY A 33 1555 1555 1.32 LINK C MLY A 33 N PHE A 34 1555 1555 1.33 LINK C ALA A 95 N MLY A 96 1555 1555 1.33 LINK C MLY A 96 N MLY A 97 1555 1555 1.33 LINK C MLY A 97 N ILE A 98 1555 1555 1.34 LINK C CYS A 115 N MLY A 116 1555 1555 1.34 LINK C MLY A 116 N GLY A 117 1555 1555 1.35 LINK C DM0 B 1 N VAL B 2 1555 1555 1.33 LINK C MET B 12 N MLY B 13 1555 1555 1.32 LINK C MLY B 13 N ARG B 14 1555 1555 1.32 LINK C ALA B 32 N MLY B 33 1555 1555 1.33 LINK C MLY B 33 N PHE B 34 1555 1555 1.32 LINK C ALA B 95 N MLY B 96 1555 1555 1.33 LINK C MLY B 96 N MLY B 97 1555 1555 1.33 LINK C MLY B 97 N ILE B 98 1555 1555 1.32 LINK C CYS B 115 N MLY B 116 1555 1555 1.34 LINK C MLY B 116 N GLY B 117 1555 1555 1.33 CISPEP 1 ASP A 101 GLY A 102 0 -9.11 SITE 1 AC1 16 TYR A 23 ASN A 106 TRP A 111 ARG A 112 SITE 2 AC1 16 MLY A 116 GLY A 117 GOL A 203 HOH A 310 SITE 3 AC1 16 HOH A 327 HOH A 347 ARG B 5 MLY B 33 SITE 4 AC1 16 PHE B 38 PRO B 70 GLY B 71 TRP B 123 SITE 1 AC2 11 DM0 A 1 PHE A 3 GLU A 7 ALA A 10 SITE 2 AC2 11 ALA A 11 ARG A 14 HIS A 15 ARG A 128 SITE 3 AC2 11 HOH A 306 HOH A 340 HOH A 346 SITE 1 AC3 7 ASN A 27 CYS A 115 GLY A 117 THR A 118 SITE 2 AC3 7 VAL A 120 T3Y A 201 ARG B 114 SITE 1 AC4 6 PHE A 34 ARG A 114 THR A 118 ASP A 119 SITE 2 AC4 6 TRP A 123 T3Y B 201 SITE 1 AC5 19 ARG A 5 MLY A 33 GLY A 71 SER A 72 SITE 2 AC5 19 ARG A 73 TRP A 123 GOL A 204 HOH A 312 SITE 3 AC5 19 ASN B 106 TRP B 111 ARG B 112 MLY B 116 SITE 4 AC5 19 GLY B 117 HOH B 303 HOH B 304 HOH B 321 SITE 5 AC5 19 HOH B 327 HOH B 333 HOH B 337 SITE 1 AC6 11 DM0 B 1 PHE B 3 GLU B 7 ALA B 10 SITE 2 AC6 11 ALA B 11 ARG B 14 HIS B 15 HOH B 311 SITE 3 AC6 11 HOH B 316 HOH B 346 HOH B 347 CRYST1 46.040 30.280 95.010 90.00 96.62 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021720 0.000000 0.002521 0.00000 SCALE2 0.000000 0.033025 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010596 0.00000 HETATM 1 N DM0 A 1 8.370 -18.974 -40.440 1.00 30.92 N HETATM 2 CA DM0 A 1 9.781 -18.521 -40.738 1.00 28.72 C HETATM 3 CB DM0 A 1 9.835 -17.821 -42.079 1.00 31.12 C HETATM 4 CG DM0 A 1 9.476 -16.351 -42.011 1.00 32.74 C HETATM 5 CD DM0 A 1 9.455 -15.822 -43.433 1.00 43.40 C HETATM 6 CE DM0 A 1 10.804 -15.986 -44.123 1.00 46.13 C HETATM 7 NZ DM0 A 1 11.641 -14.826 -43.810 1.00 51.79 N HETATM 8 CH1 DM0 A 1 12.916 -15.318 -43.258 1.00 54.38 C HETATM 9 CH2 DM0 A 1 11.842 -14.062 -45.056 1.00 51.08 C HETATM 10 C DM0 A 1 10.359 -17.599 -39.687 1.00 26.84 C HETATM 11 O DM0 A 1 9.673 -16.781 -39.102 1.00 26.92 O HETATM 12 CM1 DM0 A 1 7.708 -19.621 -41.610 1.00 31.42 C HETATM 13 CM2 DM0 A 1 8.365 -19.920 -39.306 1.00 25.29 C