HEADER DNA BINDING PROTEIN 07-MAR-14 4PSL TITLE CRYSTAL STRUCTURE OF PFUTHERMO-DBP-RP1 (CRYSTAL FORM I) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SSDNA BINDING PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 186497; SOURCE 4 STRAIN: ATCC 43587 / DSM 3638 / JCM 8422 / VC1; SOURCE 5 GENE: PF1044; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-M11 KEYWDS SSDNA BINDING PROTEIN, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.GAHLEI,H.VON MOELLER,D.EPPERS,D.SOHMEN,D.N.WILSON,B.LOLL,M.C.WAHL REVDAT 2 25-JUN-14 4PSL 1 JRNL REVDAT 1 30-APR-14 4PSL 0 JRNL AUTH H.GHALEI,H.V.MOELLER,D.EPPERS,D.SOHMEN,D.N.WILSON,B.LOLL, JRNL AUTH 2 M.C.WAHL JRNL TITL ENTRAPMENT OF DNA IN AN INTERSUBUNIT TUNNEL SYSTEM OF A JRNL TITL 2 SINGLE-STRANDED DNA-BINDING PROTEIN. JRNL REF NUCLEIC ACIDS RES. V. 42 6698 2014 JRNL REFN ISSN 0305-1048 JRNL PMID 24744237 JRNL DOI 10.1093/NAR/GKU259 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 15568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 820 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1148 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4798 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 31 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 118.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.73000 REMARK 3 B22 (A**2) : 1.73000 REMARK 3 B33 (A**2) : -2.59000 REMARK 3 B12 (A**2) : 0.86000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.530 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.454 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 65.856 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4862 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6490 ; 1.158 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 586 ; 4.801 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 227 ;38.257 ;25.242 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1054 ;23.500 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;22.533 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 730 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3464 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2926 ; 0.381 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4724 ; 0.772 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1936 ; 1.285 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1766 ; 2.093 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A D B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 145 4 REMARK 3 1 D 2 D 145 4 REMARK 3 1 B 2 B 145 4 REMARK 3 1 C 2 C 145 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1172 ; 0.54 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 1172 ; 0.60 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 C (A): 1172 ; 0.56 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 D (A): 1172 ; 0.54 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1172 ; 0.28 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 1172 ; 0.28 ; 2.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 1172 ; 0.31 ; 2.00 REMARK 3 MEDIUM THERMAL 1 D (A**2): 1172 ; 0.26 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 148 REMARK 3 ORIGIN FOR THE GROUP (A): 9.6701 -67.8397 15.8798 REMARK 3 T TENSOR REMARK 3 T11: 0.1838 T22: 0.4572 REMARK 3 T33: 0.3495 T12: -0.1180 REMARK 3 T13: -0.0388 T23: -0.1887 REMARK 3 L TENSOR REMARK 3 L11: 4.1954 L22: 2.9387 REMARK 3 L33: 1.5213 L12: -3.1827 REMARK 3 L13: -1.2802 L23: 0.6031 REMARK 3 S TENSOR REMARK 3 S11: 0.3757 S12: -0.6630 S13: 0.8574 REMARK 3 S21: -0.1578 S22: 0.1704 S23: -0.6108 REMARK 3 S31: -0.1322 S32: 0.4406 S33: -0.5461 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 147 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0329 -65.5458 -8.5194 REMARK 3 T TENSOR REMARK 3 T11: 0.2309 T22: 0.1444 REMARK 3 T33: 0.1599 T12: -0.0698 REMARK 3 T13: 0.1435 T23: -0.0653 REMARK 3 L TENSOR REMARK 3 L11: 2.6409 L22: 3.6938 REMARK 3 L33: 2.0753 L12: -1.8107 REMARK 3 L13: -1.2095 L23: 0.5980 REMARK 3 S TENSOR REMARK 3 S11: 0.1807 S12: -0.1381 S13: 0.1764 REMARK 3 S21: -0.0783 S22: 0.1904 S23: 0.0738 REMARK 3 S31: -0.1860 S32: -0.0793 S33: -0.3710 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 148 REMARK 3 ORIGIN FOR THE GROUP (A): -22.9645 -35.0786 20.6988 REMARK 3 T TENSOR REMARK 3 T11: 0.5060 T22: 0.2671 REMARK 3 T33: 0.5324 T12: -0.1822 REMARK 3 T13: 0.4776 T23: -0.1538 REMARK 3 L TENSOR REMARK 3 L11: 5.2702 L22: 3.1797 REMARK 3 L33: 1.3871 L12: -3.5374 REMARK 3 L13: -1.9009 L23: 1.9673 REMARK 3 S TENSOR REMARK 3 S11: 0.4784 S12: -0.3880 S13: 1.0488 REMARK 3 S21: -0.2806 S22: -0.0283 S23: -0.6805 REMARK 3 S31: -0.2470 S32: 0.0426 S33: -0.4501 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 148 REMARK 3 ORIGIN FOR THE GROUP (A): -22.6591 -31.0961 -3.8177 REMARK 3 T TENSOR REMARK 3 T11: 1.0948 T22: 0.5718 REMARK 3 T33: 0.8261 T12: 0.3977 REMARK 3 T13: 0.6645 T23: 0.4665 REMARK 3 L TENSOR REMARK 3 L11: 5.1030 L22: 3.5247 REMARK 3 L33: 1.2953 L12: -3.5491 REMARK 3 L13: -1.9314 L23: 1.8931 REMARK 3 S TENSOR REMARK 3 S11: 1.3356 S12: 1.1141 S13: 1.2584 REMARK 3 S21: -1.3059 S22: -0.7808 S23: -0.5491 REMARK 3 S31: -0.8614 S32: -0.5267 S33: -0.5548 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4PSL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-14. REMARK 100 THE RCSB ID CODE IS RCSB085168. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97962, 0.98003, 0.97185 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM SODIUM CACODYLATE, PH 6.4, 2.3 M REMARK 280 (NH4)2SO4 AND 10 MM MGSO4, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.68500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 81.37000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.68500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 81.37000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -119.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ALA A 1 REMARK 465 GLY B 0 REMARK 465 GLU B 148 REMARK 465 GLY C 0 REMARK 465 GLY D 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 27 115.09 -15.79 REMARK 500 ASP A 71 58.62 39.26 REMARK 500 GLU A 91 76.35 -107.24 REMARK 500 GLU B 91 61.51 -111.97 REMARK 500 THR C 26 39.75 -99.26 REMARK 500 ASN C 77 99.55 -69.23 REMARK 500 GLU C 91 75.27 -110.31 REMARK 500 ARG C 146 -6.91 -57.86 REMARK 500 GLU D 91 73.14 -108.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PSM RELATED DB: PDB REMARK 900 RELATED ID: 4PSN RELATED DB: PDB REMARK 900 RELATED ID: 4PSO RELATED DB: PDB DBREF 4PSL A 2 148 UNP Q8U208 Q8U208_PYRFU 2 148 DBREF 4PSL B 2 148 UNP Q8U208 Q8U208_PYRFU 2 148 DBREF 4PSL C 2 148 UNP Q8U208 Q8U208_PYRFU 2 148 DBREF 4PSL D 2 148 UNP Q8U208 Q8U208_PYRFU 2 148 SEQADV 4PSL GLY A 0 UNP Q8U208 EXPRESSION TAG SEQADV 4PSL ALA A 1 UNP Q8U208 EXPRESSION TAG SEQADV 4PSL GLY B 0 UNP Q8U208 EXPRESSION TAG SEQADV 4PSL ALA B 1 UNP Q8U208 EXPRESSION TAG SEQADV 4PSL GLY C 0 UNP Q8U208 EXPRESSION TAG SEQADV 4PSL ALA C 1 UNP Q8U208 EXPRESSION TAG SEQADV 4PSL GLY D 0 UNP Q8U208 EXPRESSION TAG SEQADV 4PSL ALA D 1 UNP Q8U208 EXPRESSION TAG SEQRES 1 A 149 GLY ALA PRO LYS LEU MSE THR GLY PHE VAL ARG ALA SER SEQRES 2 A 149 GLY TYR ALA ASN LYS VAL ARG ARG VAL LEU PHE ALA ILE SEQRES 3 A 149 THR ARG GLY LYS VAL PHE PRO GLU GLU VAL VAL LYS ALA SEQRES 4 A 149 ALA GLY GLU LEU ASN LYS ILE ILE PHE GLU LYS LEU GLN SEQRES 5 A 149 GLU MSE GLY VAL LYS LYS GLU ASP VAL VAL ARG ILE SER SEQRES 6 A 149 VAL ASP PHE ASN ILE GLU ASP GLY LYS ILE VAL TRP ASN SEQRES 7 A 149 LEU ASP SER LEU GLU ILE GLU THR TYR LYS LYS GLU GLU SEQRES 8 A 149 GLU GLU LYS LEU ALA LEU ALA MSE GLU GLU VAL GLU HIS SEQRES 9 A 149 MSE GLU LYS MSE PHE GLU GLU THR VAL LYS GLU LEU GLU SEQRES 10 A 149 ALA LEU SER ASP LYS LEU ARG GLU ILE SER LYS GLU ILE SEQRES 11 A 149 SER GLU LEU VAL GLU ARG MSE LYS GLN GLU TYR THR GLY SEQRES 12 A 149 LEU LYS LEU ARG SER GLU SEQRES 1 B 149 GLY ALA PRO LYS LEU MSE THR GLY PHE VAL ARG ALA SER SEQRES 2 B 149 GLY TYR ALA ASN LYS VAL ARG ARG VAL LEU PHE ALA ILE SEQRES 3 B 149 THR ARG GLY LYS VAL PHE PRO GLU GLU VAL VAL LYS ALA SEQRES 4 B 149 ALA GLY GLU LEU ASN LYS ILE ILE PHE GLU LYS LEU GLN SEQRES 5 B 149 GLU MSE GLY VAL LYS LYS GLU ASP VAL VAL ARG ILE SER SEQRES 6 B 149 VAL ASP PHE ASN ILE GLU ASP GLY LYS ILE VAL TRP ASN SEQRES 7 B 149 LEU ASP SER LEU GLU ILE GLU THR TYR LYS LYS GLU GLU SEQRES 8 B 149 GLU GLU LYS LEU ALA LEU ALA MSE GLU GLU VAL GLU HIS SEQRES 9 B 149 MSE GLU LYS MSE PHE GLU GLU THR VAL LYS GLU LEU GLU SEQRES 10 B 149 ALA LEU SER ASP LYS LEU ARG GLU ILE SER LYS GLU ILE SEQRES 11 B 149 SER GLU LEU VAL GLU ARG MSE LYS GLN GLU TYR THR GLY SEQRES 12 B 149 LEU LYS LEU ARG SER GLU SEQRES 1 C 149 GLY ALA PRO LYS LEU MSE THR GLY PHE VAL ARG ALA SER SEQRES 2 C 149 GLY TYR ALA ASN LYS VAL ARG ARG VAL LEU PHE ALA ILE SEQRES 3 C 149 THR ARG GLY LYS VAL PHE PRO GLU GLU VAL VAL LYS ALA SEQRES 4 C 149 ALA GLY GLU LEU ASN LYS ILE ILE PHE GLU LYS LEU GLN SEQRES 5 C 149 GLU MSE GLY VAL LYS LYS GLU ASP VAL VAL ARG ILE SER SEQRES 6 C 149 VAL ASP PHE ASN ILE GLU ASP GLY LYS ILE VAL TRP ASN SEQRES 7 C 149 LEU ASP SER LEU GLU ILE GLU THR TYR LYS LYS GLU GLU SEQRES 8 C 149 GLU GLU LYS LEU ALA LEU ALA MSE GLU GLU VAL GLU HIS SEQRES 9 C 149 MSE GLU LYS MSE PHE GLU GLU THR VAL LYS GLU LEU GLU SEQRES 10 C 149 ALA LEU SER ASP LYS LEU ARG GLU ILE SER LYS GLU ILE SEQRES 11 C 149 SER GLU LEU VAL GLU ARG MSE LYS GLN GLU TYR THR GLY SEQRES 12 C 149 LEU LYS LEU ARG SER GLU SEQRES 1 D 149 GLY ALA PRO LYS LEU MSE THR GLY PHE VAL ARG ALA SER SEQRES 2 D 149 GLY TYR ALA ASN LYS VAL ARG ARG VAL LEU PHE ALA ILE SEQRES 3 D 149 THR ARG GLY LYS VAL PHE PRO GLU GLU VAL VAL LYS ALA SEQRES 4 D 149 ALA GLY GLU LEU ASN LYS ILE ILE PHE GLU LYS LEU GLN SEQRES 5 D 149 GLU MSE GLY VAL LYS LYS GLU ASP VAL VAL ARG ILE SER SEQRES 6 D 149 VAL ASP PHE ASN ILE GLU ASP GLY LYS ILE VAL TRP ASN SEQRES 7 D 149 LEU ASP SER LEU GLU ILE GLU THR TYR LYS LYS GLU GLU SEQRES 8 D 149 GLU GLU LYS LEU ALA LEU ALA MSE GLU GLU VAL GLU HIS SEQRES 9 D 149 MSE GLU LYS MSE PHE GLU GLU THR VAL LYS GLU LEU GLU SEQRES 10 D 149 ALA LEU SER ASP LYS LEU ARG GLU ILE SER LYS GLU ILE SEQRES 11 D 149 SER GLU LEU VAL GLU ARG MSE LYS GLN GLU TYR THR GLY SEQRES 12 D 149 LEU LYS LEU ARG SER GLU MODRES 4PSL MSE A 5 MET SELENOMETHIONINE MODRES 4PSL MSE A 53 MET SELENOMETHIONINE MODRES 4PSL MSE A 98 MET SELENOMETHIONINE MODRES 4PSL MSE A 104 MET SELENOMETHIONINE MODRES 4PSL MSE A 107 MET SELENOMETHIONINE MODRES 4PSL MSE A 136 MET SELENOMETHIONINE MODRES 4PSL MSE B 5 MET SELENOMETHIONINE MODRES 4PSL MSE B 53 MET SELENOMETHIONINE MODRES 4PSL MSE B 98 MET SELENOMETHIONINE MODRES 4PSL MSE B 104 MET SELENOMETHIONINE MODRES 4PSL MSE B 107 MET SELENOMETHIONINE MODRES 4PSL MSE B 136 MET SELENOMETHIONINE MODRES 4PSL MSE C 5 MET SELENOMETHIONINE MODRES 4PSL MSE C 53 MET SELENOMETHIONINE MODRES 4PSL MSE C 98 MET SELENOMETHIONINE MODRES 4PSL MSE C 104 MET SELENOMETHIONINE MODRES 4PSL MSE C 107 MET SELENOMETHIONINE MODRES 4PSL MSE C 136 MET SELENOMETHIONINE MODRES 4PSL MSE D 5 MET SELENOMETHIONINE MODRES 4PSL MSE D 53 MET SELENOMETHIONINE MODRES 4PSL MSE D 98 MET SELENOMETHIONINE MODRES 4PSL MSE D 104 MET SELENOMETHIONINE MODRES 4PSL MSE D 107 MET SELENOMETHIONINE MODRES 4PSL MSE D 136 MET SELENOMETHIONINE HET MSE A 5 8 HET MSE A 53 8 HET MSE A 98 8 HET MSE A 104 8 HET MSE A 107 8 HET MSE A 136 8 HET MSE B 5 8 HET MSE B 53 8 HET MSE B 98 8 HET MSE B 104 8 HET MSE B 107 8 HET MSE B 136 8 HET MSE C 5 8 HET MSE C 53 8 HET MSE C 98 8 HET MSE C 104 8 HET MSE C 107 8 HET MSE C 136 8 HET MSE D 5 8 HET MSE D 53 8 HET MSE D 98 8 HET MSE D 104 8 HET MSE D 107 8 HET MSE D 136 8 HET SO4 A 201 5 HET SO4 B 201 5 HET SO4 C 201 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 24(C5 H11 N O2 SE) FORMUL 5 SO4 3(O4 S 2-) FORMUL 8 HOH *31(H2 O) HELIX 1 1 GLY A 13 ARG A 27 1 15 HELIX 2 2 PHE A 31 GLU A 52 1 22 HELIX 3 3 ASN A 77 LEU A 81 5 5 HELIX 4 4 GLU A 91 THR A 141 1 51 HELIX 5 5 GLY B 13 ARG B 27 1 15 HELIX 6 6 PHE B 31 MSE B 53 1 23 HELIX 7 7 LEU B 78 LEU B 81 5 4 HELIX 8 8 GLU B 91 THR B 141 1 51 HELIX 9 9 GLY C 13 THR C 26 1 14 HELIX 10 10 PHE C 31 MSE C 53 1 23 HELIX 11 11 GLU C 91 THR C 141 1 51 HELIX 12 12 GLY D 13 THR D 26 1 14 HELIX 13 13 PHE D 31 GLY D 54 1 24 HELIX 14 14 ASN D 77 LEU D 81 5 5 HELIX 15 15 GLU D 91 THR D 141 1 51 SHEET 1 A 3 LYS A 3 MSE A 5 0 SHEET 2 A 3 VAL A 60 ASP A 66 -1 O VAL A 65 N LEU A 4 SHEET 3 A 3 VAL A 9 ARG A 10 -1 N VAL A 9 O VAL A 61 SHEET 1 B 3 LYS A 3 MSE A 5 0 SHEET 2 B 3 VAL A 60 ASP A 66 -1 O VAL A 65 N LEU A 4 SHEET 3 B 3 GLU A 82 TYR A 86 -1 O TYR A 86 N VAL A 60 SHEET 1 C 2 ASN A 68 GLU A 70 0 SHEET 2 C 2 LYS A 73 VAL A 75 -1 O LYS A 73 N GLU A 70 SHEET 1 D 3 LYS B 3 MSE B 5 0 SHEET 2 D 3 VAL B 60 ILE B 69 -1 O VAL B 65 N LEU B 4 SHEET 3 D 3 ILE B 74 TRP B 76 -1 O VAL B 75 N ASN B 68 SHEET 1 E 3 VAL B 9 ARG B 10 0 SHEET 2 E 3 VAL B 60 ILE B 69 -1 O VAL B 61 N VAL B 9 SHEET 3 E 3 GLU B 82 TYR B 86 -1 O GLU B 82 N SER B 64 SHEET 1 F 3 LYS C 3 MSE C 5 0 SHEET 2 F 3 VAL C 60 GLU C 70 -1 O VAL C 65 N LEU C 4 SHEET 3 F 3 VAL C 9 ARG C 10 -1 N VAL C 9 O VAL C 61 SHEET 1 G 3 LYS C 3 MSE C 5 0 SHEET 2 G 3 VAL C 60 GLU C 70 -1 O VAL C 65 N LEU C 4 SHEET 3 G 3 LYS C 73 TYR C 86 -1 O VAL C 75 N ASN C 68 SHEET 1 H 3 LYS D 3 MSE D 5 0 SHEET 2 H 3 VAL D 60 ASP D 66 -1 O VAL D 65 N LEU D 4 SHEET 3 H 3 VAL D 9 ARG D 10 -1 N VAL D 9 O VAL D 61 SHEET 1 I 3 LYS D 3 MSE D 5 0 SHEET 2 I 3 VAL D 60 ASP D 66 -1 O VAL D 65 N LEU D 4 SHEET 3 I 3 GLU D 82 TYR D 86 -1 O GLU D 84 N ARG D 62 SHEET 1 J 2 ASN D 68 GLU D 70 0 SHEET 2 J 2 LYS D 73 VAL D 75 -1 O VAL D 75 N ASN D 68 LINK C LEU A 4 N MSE A 5 1555 1555 1.33 LINK C MSE A 5 N THR A 6 1555 1555 1.32 LINK C GLU A 52 N MSE A 53 1555 1555 1.33 LINK C MSE A 53 N GLY A 54 1555 1555 1.33 LINK C ALA A 97 N MSE A 98 1555 1555 1.33 LINK C MSE A 98 N GLU A 99 1555 1555 1.33 LINK C HIS A 103 N MSE A 104 1555 1555 1.33 LINK C MSE A 104 N GLU A 105 1555 1555 1.33 LINK C LYS A 106 N MSE A 107 1555 1555 1.33 LINK C MSE A 107 N PHE A 108 1555 1555 1.33 LINK C ARG A 135 N MSE A 136 1555 1555 1.33 LINK C MSE A 136 N LYS A 137 1555 1555 1.33 LINK C LEU B 4 N MSE B 5 1555 1555 1.33 LINK C MSE B 5 N THR B 6 1555 1555 1.32 LINK C GLU B 52 N MSE B 53 1555 1555 1.33 LINK C MSE B 53 N GLY B 54 1555 1555 1.33 LINK C ALA B 97 N MSE B 98 1555 1555 1.32 LINK C MSE B 98 N GLU B 99 1555 1555 1.34 LINK C HIS B 103 N MSE B 104 1555 1555 1.33 LINK C MSE B 104 N GLU B 105 1555 1555 1.32 LINK C LYS B 106 N MSE B 107 1555 1555 1.33 LINK C MSE B 107 N PHE B 108 1555 1555 1.32 LINK C ARG B 135 N MSE B 136 1555 1555 1.33 LINK C MSE B 136 N LYS B 137 1555 1555 1.34 LINK C LEU C 4 N MSE C 5 1555 1555 1.33 LINK C MSE C 5 N THR C 6 1555 1555 1.33 LINK C GLU C 52 N MSE C 53 1555 1555 1.33 LINK C MSE C 53 N GLY C 54 1555 1555 1.33 LINK C ALA C 97 N MSE C 98 1555 1555 1.33 LINK C MSE C 98 N GLU C 99 1555 1555 1.33 LINK C HIS C 103 N MSE C 104 1555 1555 1.33 LINK C MSE C 104 N GLU C 105 1555 1555 1.33 LINK C LYS C 106 N MSE C 107 1555 1555 1.33 LINK C MSE C 107 N PHE C 108 1555 1555 1.33 LINK C ARG C 135 N MSE C 136 1555 1555 1.33 LINK C MSE C 136 N LYS C 137 1555 1555 1.33 LINK C LEU D 4 N MSE D 5 1555 1555 1.33 LINK C MSE D 5 N THR D 6 1555 1555 1.33 LINK C GLU D 52 N MSE D 53 1555 1555 1.33 LINK C MSE D 53 N GLY D 54 1555 1555 1.33 LINK C ALA D 97 N MSE D 98 1555 1555 1.33 LINK C MSE D 98 N GLU D 99 1555 1555 1.33 LINK C HIS D 103 N MSE D 104 1555 1555 1.33 LINK C MSE D 104 N GLU D 105 1555 1555 1.33 LINK C LYS D 106 N MSE D 107 1555 1555 1.33 LINK C MSE D 107 N PHE D 108 1555 1555 1.33 LINK C ARG D 135 N MSE D 136 1555 1555 1.32 LINK C MSE D 136 N LYS D 137 1555 1555 1.33 SITE 1 AC1 3 LYS A 73 ARG B 10 LYS B 57 SITE 1 AC2 3 LYS B 73 ARG C 10 LYS C 57 CRYST1 136.636 136.636 122.055 90.00 90.00 120.00 P 64 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007319 0.004225 0.000000 0.00000 SCALE2 0.000000 0.008451 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008193 0.00000