HEADER DNA BINDING PROTEIN 07-MAR-14 4PSM TITLE CRYSTAL STRUCTURE OF PFUTHERMO-DBP-RP1 (CRYSTAL FORM II) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SSDNA BINDING PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 186497; SOURCE 4 STRAIN: ATCC 43587 / DSM 3638 / JCM 8422 / VC1; SOURCE 5 GENE: PF1044; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-M11 KEYWDS SSDNA BINDING PROTEIN, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.GAHLEI,H.VON MOELLER,D.EPPERS,B.LOLL,M.C.WAHL REVDAT 4 06-DEC-23 4PSM 1 REMARK REVDAT 3 20-SEP-23 4PSM 1 REMARK SEQADV LINK REVDAT 2 25-JUN-14 4PSM 1 JRNL REVDAT 1 30-APR-14 4PSM 0 JRNL AUTH H.GHALEI,H.V.MOELLER,D.EPPERS,D.SOHMEN,D.N.WILSON,B.LOLL, JRNL AUTH 2 M.C.WAHL JRNL TITL ENTRAPMENT OF DNA IN AN INTERSUBUNIT TUNNEL SYSTEM OF A JRNL TITL 2 SINGLE-STRANDED DNA-BINDING PROTEIN. JRNL REF NUCLEIC ACIDS RES. V. 42 6698 2014 JRNL REFN ISSN 0305-1048 JRNL PMID 24744237 JRNL DOI 10.1093/NAR/GKU259 REMARK 2 REMARK 2 RESOLUTION. 2.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 26694 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1335 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.4122 - 5.2293 0.97 2632 140 0.2319 0.2184 REMARK 3 2 5.2293 - 4.1532 0.99 2584 137 0.1940 0.2502 REMARK 3 3 4.1532 - 3.6289 0.99 2556 133 0.1839 0.2438 REMARK 3 4 3.6289 - 3.2974 0.99 2530 134 0.2291 0.2734 REMARK 3 5 3.2974 - 3.0613 0.99 2514 132 0.2136 0.3400 REMARK 3 6 3.0613 - 2.8809 0.99 2530 133 0.2424 0.2901 REMARK 3 7 2.8809 - 2.7367 1.00 2522 133 0.2401 0.3136 REMARK 3 8 2.7367 - 2.6176 0.99 2509 132 0.2584 0.3369 REMARK 3 9 2.6176 - 2.5169 0.99 2501 130 0.2903 0.4435 REMARK 3 10 2.5169 - 2.4300 0.99 2481 131 0.2667 0.3646 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.61 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 64.76 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 15.49860 REMARK 3 B22 (A**2) : 2.94810 REMARK 3 B33 (A**2) : -18.44670 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4864 REMARK 3 ANGLE : 0.992 6493 REMARK 3 CHIRALITY : 0.119 729 REMARK 3 PLANARITY : 0.002 819 REMARK 3 DIHEDRAL : 16.045 1943 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 7.9390 49.7441 -13.9703 REMARK 3 T TENSOR REMARK 3 T11: 0.0220 T22: -0.0100 REMARK 3 T33: 0.5604 T12: 0.0122 REMARK 3 T13: -0.0221 T23: 0.0755 REMARK 3 L TENSOR REMARK 3 L11: 1.0841 L22: 1.9112 REMARK 3 L33: 0.1545 L12: -1.4108 REMARK 3 L13: -0.0697 L23: 0.0677 REMARK 3 S TENSOR REMARK 3 S11: -0.0328 S12: 0.0173 S13: 0.0219 REMARK 3 S21: -0.0032 S22: 0.0377 S23: 0.1750 REMARK 3 S31: -0.0522 S32: -0.0169 S33: 0.0020 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 3:148 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 3:148 ) REMARK 3 ATOM PAIRS NUMBER : 1180 REMARK 3 RMSD : 0.049 REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 3:148 ) REMARK 3 SELECTION : CHAIN C AND (RESSEQ 3:148 ) REMARK 3 ATOM PAIRS NUMBER : 1185 REMARK 3 RMSD : 0.074 REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 3:148 ) REMARK 3 SELECTION : CHAIN D AND (RESSEQ 3:148 ) REMARK 3 ATOM PAIRS NUMBER : 1197 REMARK 3 RMSD : 0.062 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PSM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000085169. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0385 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.430 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4PSL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, PH 8.5, 0.2 M LI2SO4 REMARK 280 AND 40 % (V/V) PEG400, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.42950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.42950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.62550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 99.65150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.62550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 99.65150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.42950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.62550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 99.65150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.42950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.62550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 99.65150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -123.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ALA A 1 REMARK 465 GLY B 0 REMARK 465 ALA B 1 REMARK 465 PRO B 2 REMARK 465 GLY C 0 REMARK 465 ALA C 1 REMARK 465 PRO C 2 REMARK 465 GLY D 0 REMARK 465 ALA D 1 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 92 CA CB CG CD OE1 OE2 REMARK 480 GLU D 92 CA CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 306 O HOH C 306 4565 1.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 27 NE - CZ - NH1 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG A 27 NE - CZ - NH2 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 135 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 135 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG B 27 NE - CZ - NH1 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG B 27 NE - CZ - NH2 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG B 135 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG B 135 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG C 27 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG C 27 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG C 135 NE - CZ - NH1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG C 135 NE - CZ - NH2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG D 27 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG D 27 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG D 135 NE - CZ - NH1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG D 135 NE - CZ - NH2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PSL RELATED DB: PDB REMARK 900 RELATED ID: 4PSN RELATED DB: PDB REMARK 900 RELATED ID: 4PSO RELATED DB: PDB DBREF 4PSM A 2 148 UNP Q8U208 Q8U208_PYRFU 2 148 DBREF 4PSM B 2 148 UNP Q8U208 Q8U208_PYRFU 2 148 DBREF 4PSM C 2 148 UNP Q8U208 Q8U208_PYRFU 2 148 DBREF 4PSM D 2 148 UNP Q8U208 Q8U208_PYRFU 2 148 SEQADV 4PSM GLY A 0 UNP Q8U208 EXPRESSION TAG SEQADV 4PSM ALA A 1 UNP Q8U208 EXPRESSION TAG SEQADV 4PSM GLY B 0 UNP Q8U208 EXPRESSION TAG SEQADV 4PSM ALA B 1 UNP Q8U208 EXPRESSION TAG SEQADV 4PSM GLY C 0 UNP Q8U208 EXPRESSION TAG SEQADV 4PSM ALA C 1 UNP Q8U208 EXPRESSION TAG SEQADV 4PSM GLY D 0 UNP Q8U208 EXPRESSION TAG SEQADV 4PSM ALA D 1 UNP Q8U208 EXPRESSION TAG SEQRES 1 A 149 GLY ALA PRO LYS LEU MSE THR GLY PHE VAL ARG ALA SER SEQRES 2 A 149 GLY TYR ALA ASN LYS VAL ARG ARG VAL LEU PHE ALA ILE SEQRES 3 A 149 THR ARG GLY LYS VAL PHE PRO GLU GLU VAL VAL LYS ALA SEQRES 4 A 149 ALA GLY GLU LEU ASN LYS ILE ILE PHE GLU LYS LEU GLN SEQRES 5 A 149 GLU MSE GLY VAL LYS LYS GLU ASP VAL VAL ARG ILE SER SEQRES 6 A 149 VAL ASP PHE ASN ILE GLU ASP GLY LYS ILE VAL TRP ASN SEQRES 7 A 149 LEU ASP SER LEU GLU ILE GLU THR TYR LYS LYS GLU GLU SEQRES 8 A 149 GLU GLU LYS LEU ALA LEU ALA MSE GLU GLU VAL GLU HIS SEQRES 9 A 149 MSE GLU LYS MSE PHE GLU GLU THR VAL LYS GLU LEU GLU SEQRES 10 A 149 ALA LEU SER ASP LYS LEU ARG GLU ILE SER LYS GLU ILE SEQRES 11 A 149 SER GLU LEU VAL GLU ARG MSE LYS GLN GLU TYR THR GLY SEQRES 12 A 149 LEU LYS LEU ARG SER GLU SEQRES 1 B 149 GLY ALA PRO LYS LEU MSE THR GLY PHE VAL ARG ALA SER SEQRES 2 B 149 GLY TYR ALA ASN LYS VAL ARG ARG VAL LEU PHE ALA ILE SEQRES 3 B 149 THR ARG GLY LYS VAL PHE PRO GLU GLU VAL VAL LYS ALA SEQRES 4 B 149 ALA GLY GLU LEU ASN LYS ILE ILE PHE GLU LYS LEU GLN SEQRES 5 B 149 GLU MSE GLY VAL LYS LYS GLU ASP VAL VAL ARG ILE SER SEQRES 6 B 149 VAL ASP PHE ASN ILE GLU ASP GLY LYS ILE VAL TRP ASN SEQRES 7 B 149 LEU ASP SER LEU GLU ILE GLU THR TYR LYS LYS GLU GLU SEQRES 8 B 149 GLU GLU LYS LEU ALA LEU ALA MSE GLU GLU VAL GLU HIS SEQRES 9 B 149 MSE GLU LYS MSE PHE GLU GLU THR VAL LYS GLU LEU GLU SEQRES 10 B 149 ALA LEU SER ASP LYS LEU ARG GLU ILE SER LYS GLU ILE SEQRES 11 B 149 SER GLU LEU VAL GLU ARG MSE LYS GLN GLU TYR THR GLY SEQRES 12 B 149 LEU LYS LEU ARG SER GLU SEQRES 1 C 149 GLY ALA PRO LYS LEU MSE THR GLY PHE VAL ARG ALA SER SEQRES 2 C 149 GLY TYR ALA ASN LYS VAL ARG ARG VAL LEU PHE ALA ILE SEQRES 3 C 149 THR ARG GLY LYS VAL PHE PRO GLU GLU VAL VAL LYS ALA SEQRES 4 C 149 ALA GLY GLU LEU ASN LYS ILE ILE PHE GLU LYS LEU GLN SEQRES 5 C 149 GLU MSE GLY VAL LYS LYS GLU ASP VAL VAL ARG ILE SER SEQRES 6 C 149 VAL ASP PHE ASN ILE GLU ASP GLY LYS ILE VAL TRP ASN SEQRES 7 C 149 LEU ASP SER LEU GLU ILE GLU THR TYR LYS LYS GLU GLU SEQRES 8 C 149 GLU GLU LYS LEU ALA LEU ALA MSE GLU GLU VAL GLU HIS SEQRES 9 C 149 MSE GLU LYS MSE PHE GLU GLU THR VAL LYS GLU LEU GLU SEQRES 10 C 149 ALA LEU SER ASP LYS LEU ARG GLU ILE SER LYS GLU ILE SEQRES 11 C 149 SER GLU LEU VAL GLU ARG MSE LYS GLN GLU TYR THR GLY SEQRES 12 C 149 LEU LYS LEU ARG SER GLU SEQRES 1 D 149 GLY ALA PRO LYS LEU MSE THR GLY PHE VAL ARG ALA SER SEQRES 2 D 149 GLY TYR ALA ASN LYS VAL ARG ARG VAL LEU PHE ALA ILE SEQRES 3 D 149 THR ARG GLY LYS VAL PHE PRO GLU GLU VAL VAL LYS ALA SEQRES 4 D 149 ALA GLY GLU LEU ASN LYS ILE ILE PHE GLU LYS LEU GLN SEQRES 5 D 149 GLU MSE GLY VAL LYS LYS GLU ASP VAL VAL ARG ILE SER SEQRES 6 D 149 VAL ASP PHE ASN ILE GLU ASP GLY LYS ILE VAL TRP ASN SEQRES 7 D 149 LEU ASP SER LEU GLU ILE GLU THR TYR LYS LYS GLU GLU SEQRES 8 D 149 GLU GLU LYS LEU ALA LEU ALA MSE GLU GLU VAL GLU HIS SEQRES 9 D 149 MSE GLU LYS MSE PHE GLU GLU THR VAL LYS GLU LEU GLU SEQRES 10 D 149 ALA LEU SER ASP LYS LEU ARG GLU ILE SER LYS GLU ILE SEQRES 11 D 149 SER GLU LEU VAL GLU ARG MSE LYS GLN GLU TYR THR GLY SEQRES 12 D 149 LEU LYS LEU ARG SER GLU MODRES 4PSM MSE A 5 MET SELENOMETHIONINE MODRES 4PSM MSE A 53 MET SELENOMETHIONINE MODRES 4PSM MSE A 98 MET SELENOMETHIONINE MODRES 4PSM MSE A 104 MET SELENOMETHIONINE MODRES 4PSM MSE A 107 MET SELENOMETHIONINE MODRES 4PSM MSE A 136 MET SELENOMETHIONINE MODRES 4PSM MSE B 5 MET SELENOMETHIONINE MODRES 4PSM MSE B 53 MET SELENOMETHIONINE MODRES 4PSM MSE B 98 MET SELENOMETHIONINE MODRES 4PSM MSE B 104 MET SELENOMETHIONINE MODRES 4PSM MSE B 107 MET SELENOMETHIONINE MODRES 4PSM MSE B 136 MET SELENOMETHIONINE MODRES 4PSM MSE C 5 MET SELENOMETHIONINE MODRES 4PSM MSE C 53 MET SELENOMETHIONINE MODRES 4PSM MSE C 98 MET SELENOMETHIONINE MODRES 4PSM MSE C 104 MET SELENOMETHIONINE MODRES 4PSM MSE C 107 MET SELENOMETHIONINE MODRES 4PSM MSE C 136 MET SELENOMETHIONINE MODRES 4PSM MSE D 5 MET SELENOMETHIONINE MODRES 4PSM MSE D 53 MET SELENOMETHIONINE MODRES 4PSM MSE D 98 MET SELENOMETHIONINE MODRES 4PSM MSE D 104 MET SELENOMETHIONINE MODRES 4PSM MSE D 107 MET SELENOMETHIONINE MODRES 4PSM MSE D 136 MET SELENOMETHIONINE HET MSE A 5 8 HET MSE A 53 8 HET MSE A 98 8 HET MSE A 104 8 HET MSE A 107 8 HET MSE A 136 8 HET MSE B 5 8 HET MSE B 53 8 HET MSE B 98 8 HET MSE B 104 13 HET MSE B 107 8 HET MSE B 136 8 HET MSE C 5 8 HET MSE C 53 8 HET MSE C 98 8 HET MSE C 104 8 HET MSE C 107 8 HET MSE C 136 8 HET MSE D 5 8 HET MSE D 53 8 HET MSE D 98 8 HET MSE D 104 8 HET MSE D 107 8 HET MSE D 136 8 HET SO4 A 201 5 HET SO4 B 201 5 HET SO4 C 201 5 HET SO4 D 201 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 24(C5 H11 N O2 SE) FORMUL 5 SO4 4(O4 S 2-) FORMUL 9 HOH *68(H2 O) HELIX 1 1 GLY A 13 THR A 26 1 14 HELIX 2 2 PHE A 31 MSE A 53 1 23 HELIX 3 3 LEU A 78 LEU A 81 5 4 HELIX 4 4 LYS A 87 GLU A 90 5 4 HELIX 5 5 GLU A 91 THR A 141 1 51 HELIX 6 6 GLY B 13 THR B 26 1 14 HELIX 7 7 PHE B 31 MSE B 53 1 23 HELIX 8 8 LEU B 78 LEU B 81 5 4 HELIX 9 9 LYS B 87 GLU B 90 5 4 HELIX 10 10 GLU B 91 THR B 141 1 51 HELIX 11 11 GLY C 13 THR C 26 1 14 HELIX 12 12 PHE C 31 MSE C 53 1 23 HELIX 13 13 LEU C 78 LEU C 81 5 4 HELIX 14 14 GLU C 91 THR C 141 1 51 HELIX 15 15 GLY D 13 THR D 26 1 14 HELIX 16 16 PHE D 31 MSE D 53 1 23 HELIX 17 17 LEU D 78 LEU D 81 5 4 HELIX 18 18 GLU D 91 THR D 141 1 51 SHEET 1 A 3 LYS A 3 ARG A 10 0 SHEET 2 A 3 VAL A 60 GLU A 70 -1 O VAL A 65 N LEU A 4 SHEET 3 A 3 LYS A 73 TRP A 76 -1 O VAL A 75 N ASN A 68 SHEET 1 B 3 LYS A 3 ARG A 10 0 SHEET 2 B 3 VAL A 60 GLU A 70 -1 O VAL A 65 N LEU A 4 SHEET 3 B 3 GLU A 82 TYR A 86 -1 O TYR A 86 N VAL A 60 SHEET 1 C 3 LEU B 4 ARG B 10 0 SHEET 2 C 3 VAL B 60 VAL B 65 -1 O VAL B 65 N LEU B 4 SHEET 3 C 3 GLU B 82 TYR B 86 -1 O TYR B 86 N VAL B 60 SHEET 1 D 2 PHE B 67 GLU B 70 0 SHEET 2 D 2 LYS B 73 TRP B 76 -1 O VAL B 75 N ASN B 68 SHEET 1 E 3 LEU C 4 ARG C 10 0 SHEET 2 E 3 VAL C 60 VAL C 65 -1 O VAL C 65 N LEU C 4 SHEET 3 E 3 GLU C 82 TYR C 86 -1 O TYR C 86 N VAL C 60 SHEET 1 F 2 PHE C 67 GLU C 70 0 SHEET 2 F 2 LYS C 73 TRP C 76 -1 O VAL C 75 N ASN C 68 SHEET 1 G 3 LYS D 3 ARG D 10 0 SHEET 2 G 3 VAL D 60 GLU D 70 -1 O VAL D 65 N LEU D 4 SHEET 3 G 3 LYS D 73 TRP D 76 -1 O VAL D 75 N ASN D 68 SHEET 1 H 3 LYS D 3 ARG D 10 0 SHEET 2 H 3 VAL D 60 GLU D 70 -1 O VAL D 65 N LEU D 4 SHEET 3 H 3 GLU D 82 TYR D 86 -1 O TYR D 86 N VAL D 60 LINK C LEU A 4 N MSE A 5 1555 1555 1.33 LINK C MSE A 5 N THR A 6 1555 1555 1.33 LINK C GLU A 52 N MSE A 53 1555 1555 1.33 LINK C MSE A 53 N GLY A 54 1555 1555 1.33 LINK C ALA A 97 N MSE A 98 1555 1555 1.33 LINK C MSE A 98 N GLU A 99 1555 1555 1.33 LINK C HIS A 103 N MSE A 104 1555 1555 1.33 LINK C MSE A 104 N GLU A 105 1555 1555 1.33 LINK C LYS A 106 N MSE A 107 1555 1555 1.33 LINK C MSE A 107 N PHE A 108 1555 1555 1.33 LINK C ARG A 135 N MSE A 136 1555 1555 1.33 LINK C MSE A 136 N LYS A 137 1555 1555 1.32 LINK C LEU B 4 N MSE B 5 1555 1555 1.33 LINK C MSE B 5 N THR B 6 1555 1555 1.32 LINK C GLU B 52 N MSE B 53 1555 1555 1.33 LINK C MSE B 53 N GLY B 54 1555 1555 1.33 LINK C ALA B 97 N MSE B 98 1555 1555 1.33 LINK C MSE B 98 N GLU B 99 1555 1555 1.33 LINK C HIS B 103 N MSE B 104 1555 1555 1.33 LINK C MSE B 104 N GLU B 105 1555 1555 1.33 LINK C LYS B 106 N MSE B 107 1555 1555 1.33 LINK C MSE B 107 N PHE B 108 1555 1555 1.33 LINK C ARG B 135 N MSE B 136 1555 1555 1.33 LINK C MSE B 136 N LYS B 137 1555 1555 1.33 LINK C LEU C 4 N MSE C 5 1555 1555 1.33 LINK C MSE C 5 N THR C 6 1555 1555 1.33 LINK C GLU C 52 N MSE C 53 1555 1555 1.33 LINK C MSE C 53 N GLY C 54 1555 1555 1.33 LINK C ALA C 97 N MSE C 98 1555 1555 1.33 LINK C MSE C 98 N GLU C 99 1555 1555 1.33 LINK C HIS C 103 N MSE C 104 1555 1555 1.33 LINK C MSE C 104 N GLU C 105 1555 1555 1.33 LINK C LYS C 106 N MSE C 107 1555 1555 1.33 LINK C MSE C 107 N PHE C 108 1555 1555 1.33 LINK C ARG C 135 N MSE C 136 1555 1555 1.33 LINK C MSE C 136 N LYS C 137 1555 1555 1.33 LINK C LEU D 4 N MSE D 5 1555 1555 1.33 LINK C MSE D 5 N THR D 6 1555 1555 1.33 LINK C GLU D 52 N MSE D 53 1555 1555 1.33 LINK C MSE D 53 N GLY D 54 1555 1555 1.33 LINK C ALA D 97 N MSE D 98 1555 1555 1.33 LINK C MSE D 98 N GLU D 99 1555 1555 1.33 LINK C HIS D 103 N MSE D 104 1555 1555 1.33 LINK C MSE D 104 N GLU D 105 1555 1555 1.33 LINK C LYS D 106 N MSE D 107 1555 1555 1.33 LINK C MSE D 107 N PHE D 108 1555 1555 1.33 LINK C ARG D 135 N MSE D 136 1555 1555 1.33 LINK C MSE D 136 N LYS D 137 1555 1555 1.33 SITE 1 AC1 4 ARG A 10 LYS A 57 GLU A 58 ASN B 68 SITE 1 AC2 4 ARG B 10 LYS B 57 GLU B 58 LYS C 44 SITE 1 AC3 3 ARG C 10 LYS C 57 GLU C 58 SITE 1 AC4 4 ARG D 10 SER D 12 LYS D 57 GLU D 58 CRYST1 61.251 199.303 114.859 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016326 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005017 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008706 0.00000