HEADER TRANSPORT PROTEIN 07-MAR-14 4PSQ TITLE CRYSTAL STRUCTURE OF RETINOL-BINDING PROTEIN 4 (RBP4) IN COMPLEX WITH TITLE 2 A NON-RETINOID LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOL-BINDING PROTEIN 4; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: UNP RESIDUES 19-201; COMPND 5 SYNONYM: PLASMA RETINOL-BINDING PROTEIN, PRBP, RBP; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBP4, PRO2222; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RETINOL BINDING, DISEASE MUTATION, SECRETED, SENSORY TRANSDUCTION, KEYWDS 2 VISION, VITAMIN A, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.WANG,S.JOHNSTONE,N.WALKER REVDAT 2 16-OCT-24 4PSQ 1 REMARK SEQADV REVDAT 1 02-JUL-14 4PSQ 0 JRNL AUTH Y.WANG,R.CONNORS,P.FAN,X.WANG,Z.WANG,J.LIU,F.KAYSER, JRNL AUTH 2 J.C.MEDINA,S.JOHNSTONE,H.XU,S.THIBAULT,N.WALKER,M.CONN, JRNL AUTH 3 Y.ZHANG,Q.LIU,M.P.GRILLO,A.MOTANI,P.COWARD,Z.WANG JRNL TITL STRUCTURE-ASSISTED DISCOVERY OF THE FIRST NON-RETINOID JRNL TITL 2 LIGANDS FOR RETINOL-BINDING PROTEIN 4. JRNL REF BIOORG.MED.CHEM.LETT. V. 24 2885 2014 JRNL REFN ISSN 0960-894X JRNL PMID 24835984 JRNL DOI 10.1016/J.BMCL.2014.04.089 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23158 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1243 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1693 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3330 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.3680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2830 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 144 REMARK 3 SOLVENT ATOMS : 142 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.70000 REMARK 3 B22 (A**2) : 0.70000 REMARK 3 B33 (A**2) : -2.28000 REMARK 3 B12 (A**2) : 0.35000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.322 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.258 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.200 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.773 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3054 ; 0.004 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2796 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4094 ; 1.089 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6410 ; 0.650 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 352 ; 5.974 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;30.564 ;23.750 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 492 ;12.402 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;13.887 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 410 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3440 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 760 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1408 ; 1.214 ; 4.423 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1407 ; 1.214 ; 4.421 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1760 ; 2.165 ; 6.626 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1761 ; 2.165 ; 6.629 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1646 ; 1.127 ; 4.537 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1646 ; 1.127 ; 4.537 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2335 ; 2.025 ; 6.718 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3444 ; 4.259 ;34.661 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3404 ; 4.218 ;34.589 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4PSQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000085173. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24453 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 83.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.800 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : 0.06500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.42000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M AMMONIUM PHOSPHATE DIBASIC, 0.1 M REMARK 280 IMIDAZOLE, PH 8.0, 200 MM SODIUM CHLORIDE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.71467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.35733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 59.03600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 19.67867 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 98.39333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -28 REMARK 465 ALA B -27 REMARK 465 SER B -26 REMARK 465 MET B -25 REMARK 465 SER B -24 REMARK 465 TYR B -23 REMARK 465 TYR B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 ASP B -15 REMARK 465 TYR B -14 REMARK 465 ASP B -13 REMARK 465 ILE B -12 REMARK 465 PRO B -11 REMARK 465 THR B -10 REMARK 465 THR B -9 REMARK 465 GLU B -8 REMARK 465 ASN B -7 REMARK 465 LEU B -6 REMARK 465 TYR B -5 REMARK 465 PHE B -4 REMARK 465 GLN B -3 REMARK 465 GLY B -2 REMARK 465 ALA B -1 REMARK 465 MET B 0 REMARK 465 GLY B 176 REMARK 465 ARG B 177 REMARK 465 SER B 178 REMARK 465 GLU B 179 REMARK 465 ARG B 180 REMARK 465 ASN B 181 REMARK 465 LEU B 182 REMARK 465 LEU B 183 REMARK 465 MET A -28 REMARK 465 ALA A -27 REMARK 465 SER A -26 REMARK 465 MET A -25 REMARK 465 SER A -24 REMARK 465 TYR A -23 REMARK 465 TYR A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 ASP A -15 REMARK 465 TYR A -14 REMARK 465 ASP A -13 REMARK 465 ILE A -12 REMARK 465 PRO A -11 REMARK 465 THR A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 MET A 0 REMARK 465 GLY A 176 REMARK 465 ARG A 177 REMARK 465 SER A 178 REMARK 465 GLU A 179 REMARK 465 ARG A 180 REMARK 465 ASN A 181 REMARK 465 LEU A 182 REMARK 465 LEU A 183 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 95 42.50 -92.13 REMARK 500 TYR B 111 -27.02 74.45 REMARK 500 THR B 113 -51.31 -131.71 REMARK 500 SER A 95 48.36 -95.94 REMARK 500 TYR A 111 -27.88 72.82 REMARK 500 THR A 113 -49.37 -133.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2WL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2WL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 214 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FMZ RELATED DB: PDB DBREF 4PSQ B 1 183 UNP P02753 RET4_HUMAN 19 201 DBREF 4PSQ A 1 183 UNP P02753 RET4_HUMAN 19 201 SEQADV 4PSQ MET B -28 UNP P02753 EXPRESSION TAG SEQADV 4PSQ ALA B -27 UNP P02753 EXPRESSION TAG SEQADV 4PSQ SER B -26 UNP P02753 EXPRESSION TAG SEQADV 4PSQ MET B -25 UNP P02753 EXPRESSION TAG SEQADV 4PSQ SER B -24 UNP P02753 EXPRESSION TAG SEQADV 4PSQ TYR B -23 UNP P02753 EXPRESSION TAG SEQADV 4PSQ TYR B -22 UNP P02753 EXPRESSION TAG SEQADV 4PSQ HIS B -21 UNP P02753 EXPRESSION TAG SEQADV 4PSQ HIS B -20 UNP P02753 EXPRESSION TAG SEQADV 4PSQ HIS B -19 UNP P02753 EXPRESSION TAG SEQADV 4PSQ HIS B -18 UNP P02753 EXPRESSION TAG SEQADV 4PSQ HIS B -17 UNP P02753 EXPRESSION TAG SEQADV 4PSQ HIS B -16 UNP P02753 EXPRESSION TAG SEQADV 4PSQ ASP B -15 UNP P02753 EXPRESSION TAG SEQADV 4PSQ TYR B -14 UNP P02753 EXPRESSION TAG SEQADV 4PSQ ASP B -13 UNP P02753 EXPRESSION TAG SEQADV 4PSQ ILE B -12 UNP P02753 EXPRESSION TAG SEQADV 4PSQ PRO B -11 UNP P02753 EXPRESSION TAG SEQADV 4PSQ THR B -10 UNP P02753 EXPRESSION TAG SEQADV 4PSQ THR B -9 UNP P02753 EXPRESSION TAG SEQADV 4PSQ GLU B -8 UNP P02753 EXPRESSION TAG SEQADV 4PSQ ASN B -7 UNP P02753 EXPRESSION TAG SEQADV 4PSQ LEU B -6 UNP P02753 EXPRESSION TAG SEQADV 4PSQ TYR B -5 UNP P02753 EXPRESSION TAG SEQADV 4PSQ PHE B -4 UNP P02753 EXPRESSION TAG SEQADV 4PSQ GLN B -3 UNP P02753 EXPRESSION TAG SEQADV 4PSQ GLY B -2 UNP P02753 EXPRESSION TAG SEQADV 4PSQ ALA B -1 UNP P02753 EXPRESSION TAG SEQADV 4PSQ MET B 0 UNP P02753 EXPRESSION TAG SEQADV 4PSQ MET A -28 UNP P02753 EXPRESSION TAG SEQADV 4PSQ ALA A -27 UNP P02753 EXPRESSION TAG SEQADV 4PSQ SER A -26 UNP P02753 EXPRESSION TAG SEQADV 4PSQ MET A -25 UNP P02753 EXPRESSION TAG SEQADV 4PSQ SER A -24 UNP P02753 EXPRESSION TAG SEQADV 4PSQ TYR A -23 UNP P02753 EXPRESSION TAG SEQADV 4PSQ TYR A -22 UNP P02753 EXPRESSION TAG SEQADV 4PSQ HIS A -21 UNP P02753 EXPRESSION TAG SEQADV 4PSQ HIS A -20 UNP P02753 EXPRESSION TAG SEQADV 4PSQ HIS A -19 UNP P02753 EXPRESSION TAG SEQADV 4PSQ HIS A -18 UNP P02753 EXPRESSION TAG SEQADV 4PSQ HIS A -17 UNP P02753 EXPRESSION TAG SEQADV 4PSQ HIS A -16 UNP P02753 EXPRESSION TAG SEQADV 4PSQ ASP A -15 UNP P02753 EXPRESSION TAG SEQADV 4PSQ TYR A -14 UNP P02753 EXPRESSION TAG SEQADV 4PSQ ASP A -13 UNP P02753 EXPRESSION TAG SEQADV 4PSQ ILE A -12 UNP P02753 EXPRESSION TAG SEQADV 4PSQ PRO A -11 UNP P02753 EXPRESSION TAG SEQADV 4PSQ THR A -10 UNP P02753 EXPRESSION TAG SEQADV 4PSQ THR A -9 UNP P02753 EXPRESSION TAG SEQADV 4PSQ GLU A -8 UNP P02753 EXPRESSION TAG SEQADV 4PSQ ASN A -7 UNP P02753 EXPRESSION TAG SEQADV 4PSQ LEU A -6 UNP P02753 EXPRESSION TAG SEQADV 4PSQ TYR A -5 UNP P02753 EXPRESSION TAG SEQADV 4PSQ PHE A -4 UNP P02753 EXPRESSION TAG SEQADV 4PSQ GLN A -3 UNP P02753 EXPRESSION TAG SEQADV 4PSQ GLY A -2 UNP P02753 EXPRESSION TAG SEQADV 4PSQ ALA A -1 UNP P02753 EXPRESSION TAG SEQADV 4PSQ MET A 0 UNP P02753 EXPRESSION TAG SEQRES 1 B 212 MET ALA SER MET SER TYR TYR HIS HIS HIS HIS HIS HIS SEQRES 2 B 212 ASP TYR ASP ILE PRO THR THR GLU ASN LEU TYR PHE GLN SEQRES 3 B 212 GLY ALA MET GLU ARG ASP CYS ARG VAL SER SER PHE ARG SEQRES 4 B 212 VAL LYS GLU ASN PHE ASP LYS ALA ARG PHE SER GLY THR SEQRES 5 B 212 TRP TYR ALA MET ALA LYS LYS ASP PRO GLU GLY LEU PHE SEQRES 6 B 212 LEU GLN ASP ASN ILE VAL ALA GLU PHE SER VAL ASP GLU SEQRES 7 B 212 THR GLY GLN MET SER ALA THR ALA LYS GLY ARG VAL ARG SEQRES 8 B 212 LEU LEU ASN ASN TRP ASP VAL CYS ALA ASP MET VAL GLY SEQRES 9 B 212 THR PHE THR ASP THR GLU ASP PRO ALA LYS PHE LYS MET SEQRES 10 B 212 LYS TYR TRP GLY VAL ALA SER PHE LEU GLN LYS GLY ASN SEQRES 11 B 212 ASP ASP HIS TRP ILE VAL ASP THR ASP TYR ASP THR TYR SEQRES 12 B 212 ALA VAL GLN TYR SER CYS ARG LEU LEU ASN LEU ASP GLY SEQRES 13 B 212 THR CYS ALA ASP SER TYR SER PHE VAL PHE SER ARG ASP SEQRES 14 B 212 PRO ASN GLY LEU PRO PRO GLU ALA GLN LYS ILE VAL ARG SEQRES 15 B 212 GLN ARG GLN GLU GLU LEU CYS LEU ALA ARG GLN TYR ARG SEQRES 16 B 212 LEU ILE VAL HIS ASN GLY TYR CYS ASP GLY ARG SER GLU SEQRES 17 B 212 ARG ASN LEU LEU SEQRES 1 A 212 MET ALA SER MET SER TYR TYR HIS HIS HIS HIS HIS HIS SEQRES 2 A 212 ASP TYR ASP ILE PRO THR THR GLU ASN LEU TYR PHE GLN SEQRES 3 A 212 GLY ALA MET GLU ARG ASP CYS ARG VAL SER SER PHE ARG SEQRES 4 A 212 VAL LYS GLU ASN PHE ASP LYS ALA ARG PHE SER GLY THR SEQRES 5 A 212 TRP TYR ALA MET ALA LYS LYS ASP PRO GLU GLY LEU PHE SEQRES 6 A 212 LEU GLN ASP ASN ILE VAL ALA GLU PHE SER VAL ASP GLU SEQRES 7 A 212 THR GLY GLN MET SER ALA THR ALA LYS GLY ARG VAL ARG SEQRES 8 A 212 LEU LEU ASN ASN TRP ASP VAL CYS ALA ASP MET VAL GLY SEQRES 9 A 212 THR PHE THR ASP THR GLU ASP PRO ALA LYS PHE LYS MET SEQRES 10 A 212 LYS TYR TRP GLY VAL ALA SER PHE LEU GLN LYS GLY ASN SEQRES 11 A 212 ASP ASP HIS TRP ILE VAL ASP THR ASP TYR ASP THR TYR SEQRES 12 A 212 ALA VAL GLN TYR SER CYS ARG LEU LEU ASN LEU ASP GLY SEQRES 13 A 212 THR CYS ALA ASP SER TYR SER PHE VAL PHE SER ARG ASP SEQRES 14 A 212 PRO ASN GLY LEU PRO PRO GLU ALA GLN LYS ILE VAL ARG SEQRES 15 A 212 GLN ARG GLN GLU GLU LEU CYS LEU ALA ARG GLN TYR ARG SEQRES 16 A 212 LEU ILE VAL HIS ASN GLY TYR CYS ASP GLY ARG SER GLU SEQRES 17 A 212 ARG ASN LEU LEU HET 2WL B 201 27 HET PO4 B 202 5 HET EDO B 203 4 HET EDO B 204 4 HET EDO B 205 4 HET EDO B 206 4 HET EDO B 207 4 HET EDO B 208 4 HET EDO B 209 4 HET EDO B 210 4 HET 2WL A 201 27 HET PO4 A 202 5 HET EDO A 203 4 HET EDO A 204 4 HET EDO A 205 4 HET EDO A 206 4 HET EDO A 207 4 HET EDO A 208 4 HET EDO A 209 4 HET EDO A 210 4 HET EDO A 211 4 HET EDO A 212 4 HET EDO A 213 4 HET EDO A 214 4 HETNAM 2WL (1-BENZYL-1H-IMIDAZOL-4-YL)[4-(2-CHLOROPHENYL) HETNAM 2 2WL PIPERAZIN-1-YL]METHANONE HETNAM PO4 PHOSPHATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 2WL 2(C21 H21 CL N4 O) FORMUL 4 PO4 2(O4 P 3-) FORMUL 5 EDO 20(C2 H6 O2) FORMUL 27 HOH *142(H2 O) HELIX 1 1 ARG B 5 PHE B 9 5 5 HELIX 2 2 ASP B 16 SER B 21 1 6 HELIX 3 3 PRO B 145 LEU B 159 1 15 HELIX 4 4 ASP A 16 SER A 21 1 6 HELIX 5 5 PRO A 145 LEU A 159 1 15 SHEET 1 A10 ARG B 166 LEU B 167 0 SHEET 2 A10 GLY B 22 LYS B 30 -1 N LYS B 29 O ARG B 166 SHEET 3 A10 CYS B 129 SER B 138 -1 O SER B 138 N TYR B 25 SHEET 4 A10 TYR B 114 LEU B 123 -1 N LEU B 122 O ALA B 130 SHEET 5 A10 GLY B 100 THR B 109 -1 N ASP B 108 O VAL B 116 SHEET 6 A10 LYS B 85 GLY B 92 -1 N MET B 88 O ASP B 102 SHEET 7 A10 TRP B 67 THR B 78 -1 N VAL B 74 O TRP B 91 SHEET 8 A10 MET B 53 LEU B 64 -1 N ALA B 55 O GLY B 75 SHEET 9 A10 ASP B 39 VAL B 47 -1 N ASP B 39 O ARG B 60 SHEET 10 A10 GLY B 22 LYS B 30 -1 N TRP B 24 O ALA B 43 SHEET 1 B10 ARG A 166 LEU A 167 0 SHEET 2 B10 GLY A 22 LYS A 30 -1 N LYS A 29 O ARG A 166 SHEET 3 B10 CYS A 129 SER A 138 -1 O SER A 138 N TYR A 25 SHEET 4 B10 TYR A 114 LEU A 123 -1 N LEU A 122 O ALA A 130 SHEET 5 B10 GLY A 100 THR A 109 -1 N ASP A 108 O VAL A 116 SHEET 6 B10 LYS A 85 GLY A 92 -1 N MET A 88 O ASP A 102 SHEET 7 B10 TRP A 67 ASP A 79 -1 N VAL A 74 O TRP A 91 SHEET 8 B10 MET A 53 LEU A 64 -1 N ALA A 55 O GLY A 75 SHEET 9 B10 ASP A 39 VAL A 47 -1 N ASP A 39 O ARG A 60 SHEET 10 B10 GLY A 22 LYS A 30 -1 N GLY A 22 O PHE A 45 SSBOND 1 CYS B 4 CYS B 160 1555 1555 2.04 SSBOND 2 CYS B 70 CYS B 174 1555 1555 2.04 SSBOND 3 CYS B 120 CYS B 129 1555 1555 2.05 SSBOND 4 CYS A 4 CYS A 160 1555 1555 2.04 SSBOND 5 CYS A 70 CYS A 174 1555 1555 2.04 SSBOND 6 CYS A 120 CYS A 129 1555 1555 2.05 SITE 1 AC1 9 ASN A 66 TRP A 67 PHE B 36 LEU B 37 SITE 2 AC1 9 MET B 73 MET B 88 TYR B 90 GLY B 100 SITE 3 AC1 9 ARG B 121 SITE 1 AC2 4 LYS B 12 ARG B 19 TYR B 111 HOH B 353 SITE 1 AC3 5 PHE B 9 ARG B 10 VAL B 107 ARG B 155 SITE 2 AC3 5 GLU B 158 SITE 1 AC4 2 SER B 7 LYS B 85 SITE 1 AC5 5 ARG B 153 ALA B 162 ARG B 163 GLN B 164 SITE 2 AC5 5 TYR B 165 SITE 1 AC6 6 ASP B 103 CYS B 120 VAL B 169 HIS B 170 SITE 2 AC6 6 ASN B 171 HOH B 351 SITE 1 AC7 3 ARG B 166 LEU B 167 HOH B 365 SITE 1 AC8 5 ARG B 5 ASP B 126 ASP B 140 GLY B 143 SITE 2 AC8 5 LEU B 144 SITE 1 AC9 9 ASP B 108 THR B 109 ASP B 110 TYR B 114 SITE 2 AC9 9 ILE B 151 ARG B 155 HOH B 353 HOH B 360 SITE 3 AC9 9 HOH B 367 SITE 1 BC1 9 LEU A 35 PHE A 36 LEU A 37 MET A 88 SITE 2 BC1 9 TYR A 90 GLY A 100 ARG A 121 ASN B 66 SITE 3 BC1 9 TRP B 67 SITE 1 BC2 3 LYS A 12 ARG A 19 TYR A 111 SITE 1 BC3 5 ARG A 153 GLN A 156 ARG A 163 GLN A 164 SITE 2 BC3 5 TYR A 165 SITE 1 BC4 5 ASP A 103 CYS A 120 HIS A 170 HOH A 348 SITE 2 BC4 5 HOH A 354 SITE 1 BC5 6 PHE A 9 ARG A 10 VAL A 107 ARG A 155 SITE 2 BC5 6 GLU A 158 EDO A 213 SITE 1 BC6 4 ARG A 5 ASP A 126 GLY A 143 LEU A 144 SITE 1 BC7 2 ARG A 163 ARG A 166 SITE 1 BC8 8 TRP A 67 ASP A 68 VAL A 69 CYS A 70 SITE 2 BC8 8 ASP B 72 GLY B 92 VAL B 93 ALA B 94 SITE 1 BC9 5 CYS A 129 SER A 132 LEU A 161 GLN A 164 SITE 2 BC9 5 HOH A 355 SITE 1 CC1 3 LYS A 99 LYS B 89 LYS B 99 SITE 1 CC2 3 SER A 7 LYS A 85 TRP A 105 SITE 1 CC3 5 LYS A 29 LYS A 30 ASP A 31 GLN A 164 SITE 2 CC3 5 ARG A 166 SITE 1 CC4 5 VAL A 11 VAL A 107 ASP A 108 ARG A 155 SITE 2 CC4 5 EDO A 205 SITE 1 CC5 3 VAL A 42 THR A 56 LYS A 58 CRYST1 96.531 96.531 118.072 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010359 0.005981 0.000000 0.00000 SCALE2 0.000000 0.011962 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008469 0.00000