HEADER TRANSFERASE/DNA 10-MAR-14 4PTF TITLE TERNARY CRYSTAL STRUCTURE OF YEAST DNA POLYMERASE EPSILON WITH TITLE 2 TEMPLATE G COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN (UNP RESIDUES 1-1187); COMPND 5 SYNONYM: DNA POLYMERASE II SUBUNIT A; COMPND 6 EC: 2.7.7.7; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-D(*AP*TP*CP*CP*TP*CP*CP*CP*CP*TP*AP*(DOC))-3'; COMPND 10 CHAIN: P; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: PRIMER DNA STRAND; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: 5'-D(*TP*AP*AP*GP*GP*TP*AP*GP*GP*GP*GP*AP*GP*GP*AP*T)-3'; COMPND 15 CHAIN: T; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: TEMPLATE DNA STRAND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: POL2, DUN2, YNL262W, N0825; SOURCE 6 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 7 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES KEYWDS DNA POLYMERASE, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.JAIN,K.R.RAJASHANKAR,A.BUKU,R.E.JOHNSON,L.PRAKASH,S.PRAKASH, AUTHOR 2 A.K.AGGARWAL REVDAT 2 20-SEP-23 4PTF 1 REMARK SEQADV LINK REVDAT 1 30-APR-14 4PTF 0 JRNL AUTH R.JAIN,K.R.RAJASHANKAR,A.BUKU,R.E.JOHNSON,L.PRAKASH, JRNL AUTH 2 S.PRAKASH,A.K.AGGARWAL JRNL TITL CRYSTAL STRUCTURE OF YEAST DNA POLYMERASE EPSILON CATALYTIC JRNL TITL 2 DOMAIN. JRNL REF PLOS ONE V. 9 94835 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 24733111 JRNL DOI 10.1371/JOURNAL.PONE.0094835 REMARK 2 REMARK 2 RESOLUTION. 2.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 34031 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1710 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.8190 - 6.4249 0.99 2808 159 0.1697 0.2264 REMARK 3 2 6.4249 - 5.1016 1.00 2719 164 0.1810 0.2399 REMARK 3 3 5.1016 - 4.4573 1.00 2750 137 0.1540 0.2270 REMARK 3 4 4.4573 - 4.0500 1.00 2719 140 0.1604 0.2103 REMARK 3 5 4.0500 - 3.7599 1.00 2753 144 0.1790 0.2264 REMARK 3 6 3.7599 - 3.5383 1.00 2711 135 0.1859 0.2338 REMARK 3 7 3.5383 - 3.3611 1.00 2695 176 0.1950 0.2659 REMARK 3 8 3.3611 - 3.2149 1.00 2710 145 0.2080 0.2625 REMARK 3 9 3.2149 - 3.0911 1.00 2736 121 0.2110 0.3264 REMARK 3 10 3.0911 - 2.9845 1.00 2679 146 0.2222 0.3200 REMARK 3 11 2.9845 - 2.8912 1.00 2740 124 0.2341 0.3120 REMARK 3 12 2.8912 - 2.8090 0.85 2301 119 0.2312 0.3350 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 9680 REMARK 3 ANGLE : 1.049 13222 REMARK 3 CHIRALITY : 0.049 1450 REMARK 3 PLANARITY : 0.005 1609 REMARK 3 DIHEDRAL : 18.984 3636 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PTF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000085197. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0032 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34036 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 25.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : 0.34000 REMARK 200 FOR SHELL : 3.520 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4M8O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG5000 MME, 25 MM MAGNESIUM REMARK 280 ACETATE, 1% DMSO, PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 73.64650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.23900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 73.64650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.23900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -6 REMARK 465 PRO A -5 REMARK 465 GLY A -4 REMARK 465 GLY A -3 REMARK 465 ASP A -2 REMARK 465 PRO A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 PHE A 3 REMARK 465 GLY A 4 REMARK 465 LYS A 5 REMARK 465 LYS A 6 REMARK 465 LYS A 7 REMARK 465 ASN A 8 REMARK 465 ASN A 9 REMARK 465 GLY A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 THR A 14 REMARK 465 ALA A 15 REMARK 465 ARG A 16 REMARK 465 TYR A 17 REMARK 465 SER A 18 REMARK 465 ALA A 19 REMARK 465 GLY A 20 REMARK 465 ASN A 21 REMARK 465 LYS A 22 REMARK 465 TYR A 23 REMARK 465 ASN A 24 REMARK 465 THR A 25 REMARK 465 LEU A 26 REMARK 465 SER A 27 REMARK 465 ASN A 28 REMARK 465 ASN A 29 REMARK 465 THR A 91 REMARK 465 LEU A 92 REMARK 465 SER A 93 REMARK 465 SER A 94 REMARK 465 GLY A 95 REMARK 465 SER A 96 REMARK 465 ASN A 97 REMARK 465 GLY A 98 REMARK 465 GLY A 99 REMARK 465 GLY A 100 REMARK 465 ASN A 101 REMARK 465 SER A 102 REMARK 465 ASN A 103 REMARK 465 ASP A 104 REMARK 465 GLY A 105 REMARK 465 GLU A 106 REMARK 465 ARG A 107 REMARK 465 VAL A 108 REMARK 465 THR A 109 REMARK 465 ASN A 215 REMARK 465 ASN A 216 REMARK 465 ASN A 217 REMARK 465 VAL A 218 REMARK 465 GLN A 219 REMARK 465 VAL A 225 REMARK 465 ALA A 226 REMARK 465 ALA A 227 REMARK 465 ASN A 228 REMARK 465 GLY A 229 REMARK 465 SER A 230 REMARK 465 GLU A 231 REMARK 465 CYS A 665 REMARK 465 ALA A 666 REMARK 465 SER A 667 REMARK 465 CYS A 668 REMARK 465 ASP A 669 REMARK 465 PHE A 670 REMARK 465 ASN A 671 REMARK 465 ARG A 672 REMARK 465 PRO A 673 REMARK 465 GLY A 674 REMARK 465 LYS A 675 REMARK 465 THR A 676 REMARK 465 CYS A 677 REMARK 465 THR A 1186 REMARK 465 LYS A 1187 REMARK 465 DA P 1 REMARK 465 DT T 16 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 30 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 35 CG CD OE1 NE2 REMARK 470 LEU A 38 CG CD1 CD2 REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 GLN A 59 CG CD OE1 NE2 REMARK 470 ASN A 61 CG OD1 ND2 REMARK 470 PHE A 64 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 65 OD1 OD2 REMARK 470 LYS A 67 CG CD CE NZ REMARK 470 GLN A 71 CG CD OE1 NE2 REMARK 470 GLN A 89 CG CD OE1 NE2 REMARK 470 GLU A 125 CG CD OE1 OE2 REMARK 470 GLU A 146 CG CD OE1 OE2 REMARK 470 GLU A 154 CG CD OE1 OE2 REMARK 470 ASN A 179 CG OD1 ND2 REMARK 470 LEU A 182 CG CD1 CD2 REMARK 470 ASN A 224 CG OD1 ND2 REMARK 470 VAL A 233 CG1 CG2 REMARK 470 ASP A 234 CG OD1 OD2 REMARK 470 LYS A 236 CG CD CE NZ REMARK 470 HIS A 237 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 299 NZ REMARK 470 ASP A 331 CG OD1 OD2 REMARK 470 GLU A 342 CG CD OE1 OE2 REMARK 470 GLU A 364 CG CD OE1 OE2 REMARK 470 GLU A 453 CG CD OE1 OE2 REMARK 470 LYS A 466 CG CD CE NZ REMARK 470 GLN A 619 CG CD OE1 NE2 REMARK 470 GLU A 662 CG CD OE1 OE2 REMARK 470 ARG A 663 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 712 CG CD CE NZ REMARK 470 LYS A 714 CG CD CE NZ REMARK 470 PHE A 715 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 717 CG CD CE NZ REMARK 470 LYS A 719 CG CD CE NZ REMARK 470 TYR A 728 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 745 CG CD CE NZ REMARK 470 HIS A 748 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 749 NE CZ NH1 NH2 REMARK 470 LYS A 775 CD CE NZ REMARK 470 LYS A 789 CE NZ REMARK 470 LYS A 797 CG CD CE NZ REMARK 470 ILE A 798 CG1 CG2 CD1 REMARK 470 ASP A 799 CG OD1 OD2 REMARK 470 SER A 801 OG REMARK 470 LYS A 803 CG CD CE NZ REMARK 470 LYS A 810 CD CE NZ REMARK 470 LYS A 811 CG CD CE NZ REMARK 470 LYS A 885 CE NZ REMARK 470 GLU A 896 CG CD OE1 OE2 REMARK 470 ASN A 897 CG OD1 ND2 REMARK 470 LYS A 900 CG CD CE NZ REMARK 470 LYS A 927 CG CD CE NZ REMARK 470 LYS A 963 CG CD CE NZ REMARK 470 LEU A1035 CG CD1 CD2 REMARK 470 GLU A1040 CG CD OE1 OE2 REMARK 470 LYS A1057 CG CD CE NZ REMARK 470 GLU A1060 CG CD OE1 OE2 REMARK 470 LYS A1063 CE NZ REMARK 470 LEU A1123 CG CD1 CD2 REMARK 470 ARG A1125 CG CD NE CZ NH1 NH2 REMARK 470 ASP A1129 CG OD1 OD2 REMARK 470 GLU A1133 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 477 O HOH A 1366 1.98 REMARK 500 O GLU A 611 ND2 ASN A 615 2.04 REMARK 500 O HOH A 1305 O HOH A 1313 2.05 REMARK 500 O LYS A 614 OG1 THR A 618 2.05 REMARK 500 O HOH A 1407 O HOH P 101 2.07 REMARK 500 O LEU A 439 OG1 THR A 443 2.08 REMARK 500 NZ LYS A 295 O LYS A 299 2.09 REMARK 500 OD1 ASN A 572 O HOH A 1379 2.09 REMARK 500 OG SER A 560 O HOH A 1378 2.10 REMARK 500 O HOH A 1314 O HOH T 204 2.11 REMARK 500 OP2 DT P 5 O HOH P 108 2.11 REMARK 500 OD2 ASP A 380 O HOH A 1370 2.15 REMARK 500 OE1 GLU A 696 OH TYR A 747 2.16 REMARK 500 O MET A 1036 O HOH A 1335 2.16 REMARK 500 O GLY A 545 O HOH A 1412 2.17 REMARK 500 O ASP A 44 OG SER A 48 2.17 REMARK 500 OD2 ASP A 290 O HOH A 1366 2.18 REMARK 500 NH1 ARG A 252 O HOH A 1399 2.18 REMARK 500 O LEU A 1123 OG1 THR A 1127 2.18 REMARK 500 OE2 GLU A 873 O HOH A 1377 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA P 11 O3' DA P 11 C3' -0.046 REMARK 500 DA T 2 O3' DA T 2 C3' -0.038 REMARK 500 DA T 3 O3' DA T 3 C3' -0.050 REMARK 500 DG T 4 O3' DG T 4 C3' -0.040 REMARK 500 DG T 5 O3' DG T 5 C3' -0.041 REMARK 500 DG T 10 O3' DG T 10 C3' -0.039 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA P 11 C3' - O3' - P ANGL. DEV. = 44.6 DEGREES REMARK 500 DOC P 12 O3' - P - OP2 ANGL. DEV. = -26.5 DEGREES REMARK 500 DOC P 12 O3' - P - OP1 ANGL. DEV. = 24.7 DEGREES REMARK 500 DG T 10 C3' - C2' - C1' ANGL. DEV. = -6.0 DEGREES REMARK 500 DG T 10 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 31 -11.91 75.80 REMARK 500 TYR A 60 116.35 -161.83 REMARK 500 ARG A 63 68.69 -112.83 REMARK 500 ASP A 68 41.16 -103.38 REMARK 500 ASN A 81 162.65 179.32 REMARK 500 GLN A 89 108.47 -52.47 REMARK 500 TYR A 135 120.73 -171.62 REMARK 500 ARG A 148 33.17 -87.81 REMARK 500 GLU A 161 -57.27 9.52 REMARK 500 ASN A 221 98.47 -61.45 REMARK 500 ASP A 241 147.08 -176.33 REMARK 500 LYS A 278 108.89 -51.02 REMARK 500 ALA A 280 131.31 83.14 REMARK 500 LEU A 298 -1.52 71.99 REMARK 500 ILE A 327 -45.02 -137.65 REMARK 500 TYR A 343 66.50 -116.46 REMARK 500 ASN A 353 -76.54 -66.82 REMARK 500 ASP A 354 -163.03 -115.13 REMARK 500 ARG A 370 75.78 53.42 REMARK 500 PHE A 382 -66.26 -121.49 REMARK 500 PHE A 386 -72.23 -61.63 REMARK 500 TYR A 488 -55.95 -125.05 REMARK 500 PRO A 501 49.38 -68.35 REMARK 500 THR A 552 -156.89 -164.06 REMARK 500 ASN A 627 50.65 -69.49 REMARK 500 SER A 643 62.92 37.79 REMARK 500 GLU A 662 -6.40 75.12 REMARK 500 ARG A 663 117.91 -167.25 REMARK 500 LYS A 714 6.04 -67.32 REMARK 500 LEU A 795 -72.15 -31.24 REMARK 500 SER A 796 -36.02 -27.43 REMARK 500 ILE A 798 -75.05 103.77 REMARK 500 ALA A 805 43.36 -96.91 REMARK 500 ASP A 807 -55.95 72.95 REMARK 500 THR A 876 -54.31 60.17 REMARK 500 ASP A 877 17.01 -150.41 REMARK 500 GLU A 889 -100.37 -121.26 REMARK 500 ASN A 940 115.47 -164.73 REMARK 500 ASP A 975 4.46 -68.15 REMARK 500 GLU A 991 168.90 67.08 REMARK 500 SER A1032 6.03 -55.39 REMARK 500 LYS A1054 -141.01 -108.24 REMARK 500 ASN A1099 -36.90 66.66 REMARK 500 PRO A1108 105.21 -56.68 REMARK 500 VAL A1109 -18.12 -42.22 REMARK 500 ARG A1120 -70.42 -49.91 REMARK 500 ILE A1158 -65.21 -123.11 REMARK 500 LEU A1164 -5.51 -51.17 REMARK 500 ASN A1169 108.16 -51.33 REMARK 500 HIS A1176 161.26 -49.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 290 OD1 REMARK 620 2 HOH A1365 O 155.6 REMARK 620 3 HOH A1366 O 71.8 132.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 640 OD1 REMARK 620 2 VAL A 641 O 74.1 REMARK 620 3 ASP A 877 OD2 76.8 69.5 REMARK 620 4 DCP A1201 O3G 101.6 86.6 155.6 REMARK 620 5 DCP A1201 O2B 153.8 81.8 85.3 86.8 REMARK 620 6 DCP A1201 O1A 108.2 146.4 78.4 124.1 86.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 640 OD2 REMARK 620 2 ASP A 640 OD1 42.4 REMARK 620 3 ASP A 877 OD1 115.7 74.4 REMARK 620 4 DCP A1201 O1A 97.9 74.8 70.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA T 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH T 213 O REMARK 620 2 HOH T 214 O 101.6 REMARK 620 3 HOH T 215 O 72.9 70.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCP A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA T 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO T 102 DBREF 4PTF A 1 1187 UNP P21951 DPOE_YEAST 1 1187 DBREF 4PTF P 1 12 PDB 4PTF 4PTF 1 12 DBREF 4PTF T 1 16 PDB 4PTF 4PTF 1 16 SEQADV 4PTF GLY A -6 UNP P21951 EXPRESSION TAG SEQADV 4PTF PRO A -5 UNP P21951 EXPRESSION TAG SEQADV 4PTF GLY A -4 UNP P21951 EXPRESSION TAG SEQADV 4PTF GLY A -3 UNP P21951 EXPRESSION TAG SEQADV 4PTF ASP A -2 UNP P21951 EXPRESSION TAG SEQADV 4PTF PRO A -1 UNP P21951 EXPRESSION TAG SEQADV 4PTF HIS A 0 UNP P21951 EXPRESSION TAG SEQRES 1 A 1194 GLY PRO GLY GLY ASP PRO HIS MET MET PHE GLY LYS LYS SEQRES 2 A 1194 LYS ASN ASN GLY GLY SER SER THR ALA ARG TYR SER ALA SEQRES 3 A 1194 GLY ASN LYS TYR ASN THR LEU SER ASN ASN TYR ALA LEU SEQRES 4 A 1194 SER ALA GLN GLN LEU LEU ASN ALA SER LYS ILE ASP ASP SEQRES 5 A 1194 ILE ASP SER MET MET GLY PHE GLU ARG TYR VAL PRO PRO SEQRES 6 A 1194 GLN TYR ASN GLY ARG PHE ASP ALA LYS ASP ILE ASP GLN SEQRES 7 A 1194 ILE PRO GLY ARG VAL GLY TRP LEU THR ASN MET HIS ALA SEQRES 8 A 1194 THR LEU VAL SER GLN GLU THR LEU SER SER GLY SER ASN SEQRES 9 A 1194 GLY GLY GLY ASN SER ASN ASP GLY GLU ARG VAL THR THR SEQRES 10 A 1194 ASN GLN GLY ILE SER GLY VAL ASP PHE TYR PHE LEU ASP SEQRES 11 A 1194 GLU GLU GLY GLY SER PHE LYS SER THR VAL VAL TYR ASP SEQRES 12 A 1194 PRO TYR PHE PHE ILE ALA CYS ASN ASP GLU SER ARG VAL SEQRES 13 A 1194 ASN ASP VAL GLU GLU LEU VAL LYS LYS TYR LEU GLU SER SEQRES 14 A 1194 CYS LEU LYS SER LEU GLN ILE ILE ARG LYS GLU ASP LEU SEQRES 15 A 1194 THR MET ASP ASN HIS LEU LEU GLY LEU GLN LYS THR LEU SEQRES 16 A 1194 ILE LYS LEU SER PHE VAL ASN SER ASN GLN LEU PHE GLU SEQRES 17 A 1194 ALA ARG LYS LEU LEU ARG PRO ILE LEU GLN ASP ASN ALA SEQRES 18 A 1194 ASN ASN ASN VAL GLN ARG ASN ILE TYR ASN VAL ALA ALA SEQRES 19 A 1194 ASN GLY SER GLU LYS VAL ASP ALA LYS HIS LEU ILE GLU SEQRES 20 A 1194 ASP ILE ARG GLU TYR ASP VAL PRO TYR HIS VAL ARG VAL SEQRES 21 A 1194 SER ILE ASP LYS ASP ILE ARG VAL GLY LYS TRP TYR LYS SEQRES 22 A 1194 VAL THR GLN GLN GLY PHE ILE GLU ASP THR ARG LYS ILE SEQRES 23 A 1194 ALA PHE ALA ASP PRO VAL VAL MET ALA PHE ASP ILE GLU SEQRES 24 A 1194 THR THR LYS PRO PRO LEU LYS PHE PRO ASP SER ALA VAL SEQRES 25 A 1194 ASP GLN ILE MET MET ILE SER TYR MET ILE ASP GLY GLU SEQRES 26 A 1194 GLY PHE LEU ILE THR ASN ARG GLU ILE ILE SER GLU ASP SEQRES 27 A 1194 ILE GLU ASP PHE GLU TYR THR PRO LYS PRO GLU TYR PRO SEQRES 28 A 1194 GLY PHE PHE THR ILE PHE ASN GLU ASN ASP GLU VAL ALA SEQRES 29 A 1194 LEU LEU GLN ARG PHE PHE GLU HIS ILE ARG ASP VAL ARG SEQRES 30 A 1194 PRO THR VAL ILE SER THR PHE ASN GLY ASP PHE PHE ASP SEQRES 31 A 1194 TRP PRO PHE ILE HIS ASN ARG SER LYS ILE HIS GLY LEU SEQRES 32 A 1194 ASP MET PHE ASP GLU ILE GLY PHE ALA PRO ASP ALA GLU SEQRES 33 A 1194 GLY GLU TYR LYS SER SER TYR CYS SER HIS MET ASP CYS SEQRES 34 A 1194 PHE ARG TRP VAL LYS ARG ASP SER TYR LEU PRO GLN GLY SEQRES 35 A 1194 SER GLN GLY LEU LYS ALA VAL THR GLN SER LYS LEU GLY SEQRES 36 A 1194 TYR ASN PRO ILE GLU LEU ASP PRO GLU LEU MET THR PRO SEQRES 37 A 1194 TYR ALA PHE GLU LYS PRO GLN HIS LEU SER GLU TYR SER SEQRES 38 A 1194 VAL SER ASP ALA VAL ALA THR TYR TYR LEU TYR MET LYS SEQRES 39 A 1194 TYR VAL HIS PRO PHE ILE PHE SER LEU CYS THR ILE ILE SEQRES 40 A 1194 PRO LEU ASN PRO ASP GLU THR LEU ARG LYS GLY THR GLY SEQRES 41 A 1194 THR LEU CYS GLU MET LEU LEU MET VAL GLN ALA TYR GLN SEQRES 42 A 1194 HIS ASN ILE LEU LEU PRO ASN LYS HIS THR ASP PRO ILE SEQRES 43 A 1194 GLU ARG PHE TYR ASP GLY HIS LEU LEU GLU SER GLU THR SEQRES 44 A 1194 TYR VAL GLY GLY HIS VAL GLU SER LEU GLU ALA GLY VAL SEQRES 45 A 1194 PHE ARG SER ASP LEU LYS ASN GLU PHE LYS ILE ASP PRO SEQRES 46 A 1194 SER ALA ILE ASP GLU LEU LEU GLN GLU LEU PRO GLU ALA SEQRES 47 A 1194 LEU LYS PHE SER VAL GLU VAL GLU ASN LYS SER SER VAL SEQRES 48 A 1194 ASP LYS VAL THR ASN PHE GLU GLU ILE LYS ASN GLN ILE SEQRES 49 A 1194 THR GLN LYS LEU LEU GLU LEU LYS GLU ASN ASN ILE ARG SEQRES 50 A 1194 ASN GLU LEU PRO LEU ILE TYR HIS VAL ASP VAL ALA SER SEQRES 51 A 1194 MET TYR PRO ASN ILE MET THR THR ASN ARG LEU GLN PRO SEQRES 52 A 1194 ASP SER ILE LYS ALA GLU ARG ASP CYS ALA SER CYS ASP SEQRES 53 A 1194 PHE ASN ARG PRO GLY LYS THR CYS ALA ARG LYS LEU LYS SEQRES 54 A 1194 TRP ALA TRP ARG GLY GLU PHE PHE PRO SER LYS MET ASP SEQRES 55 A 1194 GLU TYR ASN MET ILE LYS ARG ALA LEU GLN ASN GLU THR SEQRES 56 A 1194 PHE PRO ASN LYS ASN LYS PHE SER LYS LYS LYS VAL LEU SEQRES 57 A 1194 THR PHE ASP GLU LEU SER TYR ALA ASP GLN VAL ILE HIS SEQRES 58 A 1194 ILE LYS LYS ARG LEU THR GLU TYR SER ARG LYS VAL TYR SEQRES 59 A 1194 HIS ARG VAL LYS VAL SER GLU ILE VAL GLU ARG GLU ALA SEQRES 60 A 1194 ILE VAL CYS GLN ARG GLU ASN PRO PHE TYR VAL ASP THR SEQRES 61 A 1194 VAL LYS SER PHE ARG ASP ARG ARG TYR GLU PHE LYS GLY SEQRES 62 A 1194 LEU ALA LYS THR TRP LYS GLY ASN LEU SER LYS ILE ASP SEQRES 63 A 1194 PRO SER ASP LYS HIS ALA ARG ASP GLU ALA LYS LYS MET SEQRES 64 A 1194 ILE VAL LEU TYR ASP SER LEU GLN LEU ALA HIS LYS VAL SEQRES 65 A 1194 ILE LEU ASN SER PHE TYR GLY TYR VAL MET ARG LYS GLY SEQRES 66 A 1194 SER ARG TRP TYR SER MET GLU MET ALA GLY ILE THR CYS SEQRES 67 A 1194 LEU THR GLY ALA THR ILE ILE GLN MET ALA ARG ALA LEU SEQRES 68 A 1194 VAL GLU ARG VAL GLY ARG PRO LEU GLU LEU ASP THR ASP SEQRES 69 A 1194 GLY ILE TRP CYS ILE LEU PRO LYS SER PHE PRO GLU THR SEQRES 70 A 1194 TYR PHE PHE THR LEU GLU ASN GLY LYS LYS LEU TYR LEU SEQRES 71 A 1194 SER TYR PRO CYS SER MET LEU ASN TYR ARG VAL HIS GLN SEQRES 72 A 1194 LYS PHE THR ASN HIS GLN TYR GLN GLU LEU LYS ASP PRO SEQRES 73 A 1194 LEU ASN TYR ILE TYR GLU THR HIS SER GLU ASN THR ILE SEQRES 74 A 1194 PHE PHE GLU VAL ASP GLY PRO TYR LYS ALA MET ILE LEU SEQRES 75 A 1194 PRO SER SER LYS GLU GLU GLY LYS GLY ILE LYS LYS ARG SEQRES 76 A 1194 TYR ALA VAL PHE ASN GLU ASP GLY SER LEU ALA GLU LEU SEQRES 77 A 1194 LYS GLY PHE GLU LEU LYS ARG ARG GLY GLU LEU GLN LEU SEQRES 78 A 1194 ILE LYS ASN PHE GLN SER ASP ILE PHE LYS VAL PHE LEU SEQRES 79 A 1194 GLU GLY ASP THR LEU GLU GLY CYS TYR SER ALA VAL ALA SEQRES 80 A 1194 SER VAL CYS ASN ARG TRP LEU ASP VAL LEU ASP SER HIS SEQRES 81 A 1194 GLY LEU MET LEU GLU ASP GLU ASP LEU VAL SER LEU ILE SEQRES 82 A 1194 CYS GLU ASN ARG SER MET SER LYS THR LEU LYS GLU TYR SEQRES 83 A 1194 GLU GLY GLN LYS SER THR SER ILE THR THR ALA ARG ARG SEQRES 84 A 1194 LEU GLY ASP PHE LEU GLY GLU ASP MET VAL LYS ASP LYS SEQRES 85 A 1194 GLY LEU GLN CYS LYS TYR ILE ILE SER SER LYS PRO PHE SEQRES 86 A 1194 ASN ALA PRO VAL THR GLU ARG ALA ILE PRO VAL ALA ILE SEQRES 87 A 1194 PHE SER ALA ASP ILE PRO ILE LYS ARG SER PHE LEU ARG SEQRES 88 A 1194 ARG TRP THR LEU ASP PRO SER LEU GLU ASP LEU ASP ILE SEQRES 89 A 1194 ARG THR ILE ILE ASP TRP GLY TYR TYR ARG GLU ARG LEU SEQRES 90 A 1194 GLY SER ALA ILE GLN LYS ILE ILE THR ILE PRO ALA ALA SEQRES 91 A 1194 LEU GLN GLY VAL SER ASN PRO VAL PRO ARG VAL GLU HIS SEQRES 92 A 1194 PRO ASP TRP LEU LYS ARG LYS ILE ALA THR LYS SEQRES 1 P 12 DA DT DC DC DT DC DC DC DC DT DA DOC SEQRES 1 T 16 DT DA DA DG DG DT DA DG DG DG DG DA DG SEQRES 2 T 16 DG DA DT MODRES 4PTF DOC P 12 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HET DOC P 12 18 HET DCP A1201 28 HET CA A1202 1 HET CA A1203 1 HET CA A1204 1 HET NA A1205 1 HET CA T 101 1 HET EDO T 102 10 HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM DCP 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 DOC C9 H14 N3 O6 P FORMUL 4 DCP C9 H16 N3 O13 P3 FORMUL 5 CA 4(CA 2+) FORMUL 8 NA NA 1+ FORMUL 10 EDO C2 H6 O2 FORMUL 11 HOH *147(H2 O) HELIX 1 1 LEU A 32 GLY A 51 1 20 HELIX 2 2 ASP A 65 ILE A 72 5 8 HELIX 3 3 ARG A 148 LEU A 160 1 13 HELIX 4 4 ASN A 179 GLY A 183 5 5 HELIX 5 5 ASN A 195 ALA A 214 1 20 HELIX 6 6 ASP A 234 HIS A 237 5 4 HELIX 7 7 PRO A 248 LYS A 257 1 10 HELIX 8 8 ASP A 354 ARG A 370 1 17 HELIX 9 9 PHE A 382 HIS A 394 1 13 HELIX 10 10 ASP A 397 GLY A 403 1 7 HELIX 11 11 CYS A 422 SER A 430 1 9 HELIX 12 12 PRO A 433 GLN A 437 5 5 HELIX 13 13 GLY A 438 GLY A 448 1 11 HELIX 14 14 ASP A 455 MET A 459 5 5 HELIX 15 15 THR A 460 GLU A 465 1 6 HELIX 16 16 LYS A 466 TYR A 488 1 23 HELIX 17 17 TYR A 488 CYS A 497 1 10 HELIX 18 18 ASN A 503 LYS A 510 1 8 HELIX 19 19 GLY A 511 HIS A 527 1 17 HELIX 20 20 ASP A 577 VAL A 598 1 22 HELIX 21 21 SER A 603 VAL A 607 5 5 HELIX 22 22 ASN A 609 ASN A 627 1 19 HELIX 23 23 SER A 643 ARG A 653 1 11 HELIX 24 24 GLN A 655 ASP A 657 5 3 HELIX 25 25 LYS A 693 GLN A 705 1 13 HELIX 26 26 SER A 727 HIS A 748 1 22 HELIX 27 27 PRO A 768 LYS A 797 1 30 HELIX 28 28 ASP A 807 TYR A 833 1 27 HELIX 29 29 VAL A 834 ARG A 836 5 3 HELIX 30 30 SER A 843 GLU A 866 1 24 HELIX 31 31 TYR A 905 PHE A 918 1 14 HELIX 32 32 GLN A 993 PHE A 1003 1 11 HELIX 33 33 LYS A 1004 GLU A 1008 5 5 HELIX 34 34 THR A 1011 SER A 1032 1 22 HELIX 35 35 GLU A 1038 ILE A 1046 1 9 HELIX 36 36 THR A 1055 GLU A 1060 5 6 HELIX 37 37 SER A 1064 GLY A 1078 1 15 HELIX 38 38 GLU A 1079 VAL A 1082 5 4 HELIX 39 39 PRO A 1101 GLU A 1104 5 4 HELIX 40 40 ALA A 1110 ALA A 1114 5 5 HELIX 41 41 ASP A 1115 LEU A 1128 1 14 HELIX 42 42 ASP A 1136 ILE A 1141 1 6 HELIX 43 43 ASP A 1142 ILE A 1158 1 17 HELIX 44 44 ILE A 1158 LEU A 1164 1 7 HELIX 45 45 PRO A 1177 LYS A 1183 1 7 SHEET 1 A 5 SER A 128 VAL A 134 0 SHEET 2 A 5 ILE A 114 ASP A 123 -1 N PHE A 119 O SER A 131 SHEET 3 A 5 ARG A 75 VAL A 87 -1 N TRP A 78 O LEU A 122 SHEET 4 A 5 TRP A 264 VAL A 267 -1 O VAL A 267 N ARG A 75 SHEET 5 A 5 PHE A 272 GLU A 274 -1 O ILE A 273 N LYS A 266 SHEET 1 B 4 ILE A 169 LYS A 172 0 SHEET 2 B 4 LYS A 186 SER A 192 -1 O LEU A 188 N ILE A 170 SHEET 3 B 4 TYR A 138 CYS A 143 -1 N PHE A 139 O LEU A 191 SHEET 4 B 4 ILE A 239 ARG A 243 -1 O ASP A 241 N ALA A 142 SHEET 1 C 7 PHE A 335 GLU A 336 0 SHEET 2 C 7 PHE A 346 ILE A 349 -1 O PHE A 347 N PHE A 335 SHEET 3 C 7 GLU A 318 THR A 323 1 N LEU A 321 O THR A 348 SHEET 4 C 7 ILE A 308 ILE A 315 -1 N TYR A 313 O PHE A 320 SHEET 5 C 7 VAL A 286 THR A 293 -1 N ASP A 290 O SER A 312 SHEET 6 C 7 VAL A 373 THR A 376 1 O VAL A 373 N MET A 287 SHEET 7 C 7 SER A 418 ASP A 421 1 O SER A 418 N ILE A 374 SHEET 1 D 2 ALA A 405 PRO A 406 0 SHEET 2 D 2 TYR A 412 LYS A 413 -1 O LYS A 413 N ALA A 405 SHEET 1 E 5 PHE A 542 TYR A 543 0 SHEET 2 E 5 HIS A 546 TYR A 553 -1 O HIS A 546 N TYR A 543 SHEET 3 E 5 ARG A 679 PHE A 689 -1 O ARG A 686 N THR A 552 SHEET 4 E 5 VAL A 752 VAL A 762 -1 O VAL A 762 N ARG A 679 SHEET 5 E 5 ILE A 659 LYS A 660 -1 N LYS A 660 O ILE A 761 SHEET 1 F 5 VAL A 558 SER A 560 0 SHEET 2 F 5 ARG A 870 ASP A 875 -1 O LEU A 874 N GLU A 559 SHEET 3 F 5 GLY A 878 PRO A 884 -1 O ILE A 882 N ARG A 870 SHEET 4 F 5 PRO A 634 VAL A 641 -1 N LEU A 635 O LEU A 883 SHEET 5 F 5 PHE A 944 TYR A 950 -1 O GLU A 945 N ASP A 640 SHEET 1 G 4 GLY A 564 ARG A 567 0 SHEET 2 G 4 ALA A 952 LEU A 955 -1 O LEU A 955 N GLY A 564 SHEET 3 G 4 TYR A 969 PHE A 972 -1 O PHE A 972 N ALA A 952 SHEET 4 G 4 LEU A 978 LYS A 982 -1 O ALA A 979 N VAL A 971 SHEET 1 H 2 ASN A 572 LYS A 575 0 SHEET 2 H 2 ILE A 629 GLU A 632 -1 O GLU A 632 N ASN A 572 SHEET 1 I 2 PHE A 709 PRO A 710 0 SHEET 2 I 2 VAL A 720 LEU A 721 -1 O LEU A 721 N PHE A 709 SHEET 1 J 2 THR A 890 THR A 894 0 SHEET 2 J 2 LYS A 900 SER A 904 -1 O LEU A 901 N PHE A 893 SHEET 1 K 2 ASN A 920 ASP A 928 0 SHEET 2 K 2 ILE A 933 GLU A 939 -1 O GLU A 939 N ASN A 920 SHEET 1 L 4 GLU A 991 LEU A 992 0 SHEET 2 L 4 GLU A1048 SER A1051 -1 O ASN A1049 N GLU A 991 SHEET 3 L 4 GLN A1088 ILE A1093 -1 O TYR A1091 N GLU A1048 SHEET 4 L 4 ALA A1106 PRO A1108 -1 O ILE A1107 N ILE A1092 LINK O3' DA P 11 P DOC P 12 1555 1555 1.58 LINK OD1 ASP A 290 CA CA A1204 1555 1555 2.43 LINK OD1 ASP A 640 CA CA A1202 1555 1555 2.24 LINK OD2 ASP A 640 CA CA A1203 1555 1555 2.51 LINK OD1 ASP A 640 CA CA A1203 1555 1555 3.20 LINK O VAL A 641 CA CA A1202 1555 1555 2.42 LINK OD2 ASP A 877 CA CA A1202 1555 1555 2.44 LINK OD1 ASP A 877 CA CA A1203 1555 1555 2.40 LINK O3G DCP A1201 CA CA A1202 1555 1555 2.08 LINK O2B DCP A1201 CA CA A1202 1555 1555 2.18 LINK O1A DCP A1201 CA CA A1202 1555 1555 2.18 LINK O1A DCP A1201 CA CA A1203 1555 1555 2.66 LINK CA CA A1204 O HOH A1365 1555 1555 2.36 LINK CA CA A1204 O HOH A1366 1555 1555 3.17 LINK NA NA A1205 OP1 DG T 10 1555 1555 2.73 LINK CA CA T 101 O HOH T 213 1555 1555 2.97 LINK CA CA T 101 O HOH T 214 1555 1555 2.45 LINK CA CA T 101 O HOH T 215 1555 1555 2.42 CISPEP 1 ARG A 663 ASP A 664 0 -5.43 CISPEP 2 TYR A 747 HIS A 748 0 -3.01 CISPEP 3 ASP A 802 LYS A 803 0 8.66 CISPEP 4 ARG A 806 ASP A 807 0 -9.02 CISPEP 5 GLY A 948 PRO A 949 0 9.07 CISPEP 6 LYS A 1096 PRO A 1097 0 -7.43 SITE 1 AC1 17 ASP A 640 VAL A 641 SER A 643 MET A 644 SITE 2 AC1 17 TYR A 645 ARG A 781 LYS A 785 LYS A 824 SITE 3 AC1 17 ASN A 828 TYR A 831 ASP A 877 CA A1202 SITE 4 AC1 17 CA A1203 HOH A1345 DOC P 12 DG T 4 SITE 5 AC1 17 DG T 5 SITE 1 AC2 5 ASP A 640 VAL A 641 ASP A 877 DCP A1201 SITE 2 AC2 5 CA A1203 SITE 1 AC3 5 ASP A 640 ASP A 877 DCP A1201 CA A1202 SITE 2 AC3 5 DOC P 12 SITE 1 AC4 2 ASP A 290 HOH A1365 SITE 1 AC5 3 ARG A 968 LYS A1156 DG T 10 SITE 1 AC6 4 DG T 9 HOH T 213 HOH T 214 HOH T 215 SITE 1 AC7 2 DG T 13 DG T 14 CRYST1 147.293 68.478 149.079 90.00 109.60 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006789 0.000000 0.002418 0.00000 SCALE2 0.000000 0.014603 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007121 0.00000