HEADER HYDROLASE 11-MAR-14 4PTK TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCAL IMPASE-I COMPLEX WITH 3MG2+ AND TITLE 2 PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSITOL MONOPHOSPHATASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 282459; SOURCE 4 STRAIN: MSSA476; SOURCE 5 GENE: SAS2203; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS IMPASE PRODUCT COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.DUTTA,S.BHATTACHARYYA,D.DUTTA,A.K.DAS REVDAT 3 08-NOV-23 4PTK 1 REMARK REVDAT 2 24-AUG-22 4PTK 1 JRNL REMARK SEQADV LINK REVDAT 1 22-OCT-14 4PTK 0 JRNL AUTH A.DUTTA,S.BHATTACHARYYA,D.DUTTA,A.K.DAS JRNL TITL STRUCTURAL ELUCIDATION OF THE BINDING SITE AND MODE OF JRNL TITL 2 INHIBITION OF LI(+) AND MG(2+) IN INOSITOL MONOPHOSPHATASE. JRNL REF FEBS J. V. 281 5309 2014 JRNL REFN ISSN 1742-464X JRNL PMID 25263816 JRNL DOI 10.1111/FEBS.13070 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 18387 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 953 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1220 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4191 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 72 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : 0.89000 REMARK 3 B33 (A**2) : -0.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.818 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.328 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.200 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.013 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.894 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4301 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4134 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5814 ; 1.807 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9528 ; 0.869 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 521 ; 7.735 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 201 ;41.309 ;25.821 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 778 ;19.581 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;28.816 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 643 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4841 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 975 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 4PTK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000085201. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : VARIMAX (OSMIC MIRROR) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18411 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.503 REMARK 200 RESOLUTION RANGE LOW (A) : 140.497 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14900 REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.69500 REMARK 200 R SYM FOR SHELL (I) : 0.69500 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3QMF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 0.1M HEPES PH8,18% (W/V) REMARK 280 PEG 3350, SOAKED WITH 0.1M HEPES PH8, 18% (W/V) PEG 3350, 10% REMARK 280 GLYCEROL FOR 24 HOURS, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 30.21400 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.24850 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 30.21400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 70.24850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 LYS B 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 37 NE CZ NH1 NH2 REMARK 470 ARG A 39 CZ NH1 NH2 REMARK 470 GLU A 80 CG CD OE1 OE2 REMARK 470 ARG B 37 NE CZ NH1 NH2 REMARK 470 ARG B 39 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 PO4 B 303 MG MG B 304 1.56 REMARK 500 O1 PO4 A 301 MG MG A 302 1.69 REMARK 500 NH2 ARG A 133 OE2 GLU A 218 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 133 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 133 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 180 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 180 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP B 171 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP B 171 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG B 180 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 180 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 36 -88.61 -119.91 REMARK 500 TYR A 61 -38.86 -131.85 REMARK 500 GLU A 71 43.90 -92.80 REMARK 500 MET A 76 104.94 87.41 REMARK 500 ASN A 79 20.34 137.92 REMARK 500 GLU A 80 -43.99 58.42 REMARK 500 LYS A 126 51.10 39.51 REMARK 500 ASN A 204 59.13 -163.61 REMARK 500 TYR A 264 112.48 77.46 REMARK 500 LYS B 36 -90.71 -105.68 REMARK 500 GLU B 71 22.18 -79.75 REMARK 500 MET B 76 99.37 88.36 REMARK 500 ASN B 79 -169.71 39.72 REMARK 500 ASN B 140 53.21 32.72 REMARK 500 ALA B 238 149.54 -172.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 237 ALA B 238 145.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 70 OE2 REMARK 620 2 ASP A 88 OD1 90.3 REMARK 620 3 ILE A 90 O 148.5 79.6 REMARK 620 4 PO4 A 301 O4 108.1 161.6 84.3 REMARK 620 5 PO4 A 301 O1 115.0 106.0 96.4 66.7 REMARK 620 6 HOH A 401 O 77.3 92.6 73.5 91.5 157.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 70 OE1 REMARK 620 2 PO4 A 301 O2 93.9 REMARK 620 3 PO4 A 301 O4 90.1 60.9 REMARK 620 4 HOH A 418 O 81.4 122.6 170.9 REMARK 620 5 HOH A 440 O 70.2 151.5 94.5 79.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 88 OD2 REMARK 620 2 ASP A 91 OD1 88.8 REMARK 620 3 ASP A 209 OD1 91.2 101.4 REMARK 620 4 GOL A 305 O2 178.1 91.9 86.9 REMARK 620 5 HOH A 442 O 98.1 167.1 67.8 80.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 70 OE2 REMARK 620 2 ASP B 88 OD1 91.3 REMARK 620 3 ILE B 90 O 154.9 87.4 REMARK 620 4 PO4 B 303 O4 97.3 166.3 89.3 REMARK 620 5 PO4 B 303 O3 108.2 100.3 96.6 67.0 REMARK 620 6 HOH B 427 O 78.9 110.0 78.1 82.2 148.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 70 OE1 REMARK 620 2 PO4 B 303 O1 93.6 REMARK 620 3 PO4 B 303 O4 84.2 62.1 REMARK 620 4 HOH B 428 O 80.9 148.7 86.7 REMARK 620 5 HOH B 429 O 156.3 110.0 105.0 78.0 REMARK 620 6 HOH B 430 O 74.9 124.7 158.1 83.8 92.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 88 OD2 REMARK 620 2 ASP B 91 OD1 81.0 REMARK 620 3 ASP B 209 OD1 86.7 83.1 REMARK 620 4 PO4 B 303 O1 138.5 127.9 121.8 REMARK 620 5 GOL B 305 O1 157.0 76.6 85.9 62.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4G61 RELATED DB: PDB REMARK 900 RELATED ID: 4I3Y RELATED DB: PDB REMARK 900 RELATED ID: 4I40 RELATED DB: PDB DBREF 4PTK A 1 265 UNP Q6G709 Q6G709_STAAS 1 265 DBREF 4PTK B 1 265 UNP Q6G709 Q6G709_STAAS 1 265 SEQADV 4PTK HIS A -5 UNP Q6G709 EXPRESSION TAG SEQADV 4PTK HIS A -4 UNP Q6G709 EXPRESSION TAG SEQADV 4PTK HIS A -3 UNP Q6G709 EXPRESSION TAG SEQADV 4PTK HIS A -2 UNP Q6G709 EXPRESSION TAG SEQADV 4PTK HIS A -1 UNP Q6G709 EXPRESSION TAG SEQADV 4PTK HIS A 0 UNP Q6G709 EXPRESSION TAG SEQADV 4PTK HIS B -5 UNP Q6G709 EXPRESSION TAG SEQADV 4PTK HIS B -4 UNP Q6G709 EXPRESSION TAG SEQADV 4PTK HIS B -3 UNP Q6G709 EXPRESSION TAG SEQADV 4PTK HIS B -2 UNP Q6G709 EXPRESSION TAG SEQADV 4PTK HIS B -1 UNP Q6G709 EXPRESSION TAG SEQADV 4PTK HIS B 0 UNP Q6G709 EXPRESSION TAG SEQRES 1 A 271 HIS HIS HIS HIS HIS HIS MET THR ASP LYS THR LEU GLN SEQRES 2 A 271 GLN ILE ASP LYS LEU ILE CYS SER TRP LEU LYS GLN ILE SEQRES 3 A 271 ASP ASN VAL ILE PRO GLN LEU ILE MET GLU MET THR THR SEQRES 4 A 271 GLU THR LYS ARG HIS ARG PHE ASP LEU VAL THR ASN VAL SEQRES 5 A 271 ASP LYS GLN ILE GLN GLN GLN PHE GLN GLN PHE LEU ALA SEQRES 6 A 271 THR TYR PHE PRO GLU HIS GLN LEU LEU ALA GLU GLU LYS SEQRES 7 A 271 SER ASN ALA MET ILE THR ASN GLU ILE ASN HIS LEU TRP SEQRES 8 A 271 ILE MET ASP PRO ILE ASP GLY THR ALA ASN LEU VAL LYS SEQRES 9 A 271 GLN GLN GLU ASP TYR CYS ILE ILE LEU ALA TYR PHE TYR SEQRES 10 A 271 GLU GLY LYS PRO MET LEU SER TYR VAL TYR ASP TYR PRO SEQRES 11 A 271 HIS LYS LYS LEU TYR LYS ALA ILE ARG GLY GLU GLY ALA SEQRES 12 A 271 PHE CYS ASN GLY ILE LYS MET GLU GLU PRO PRO SER LEU SEQRES 13 A 271 LYS LEU GLU ASP ALA ILE ILE SER PHE ASN ALA GLN VAL SEQRES 14 A 271 MET ASN LEU ASP THR VAL GLN ASP LEU PHE ASP ALA SER SEQRES 15 A 271 PHE SER TYR ARG LEU VAL GLY ALA CYS GLY LEU ASP SER SEQRES 16 A 271 MET ARG VAL ALA LYS GLY GLN PHE GLY ALA HIS ILE ASN SEQRES 17 A 271 THR ASN PRO LYS PRO TRP ASP ILE ALA ALA GLN PHE LEU SEQRES 18 A 271 PHE ALA GLU LEU LEU ASN LEU LYS MET THR THR LEU ASP SEQRES 19 A 271 GLY LYS ALA ILE ASP HIS LEU LYS GLY ALA PRO PHE ILE SEQRES 20 A 271 ILE SER ASN LYS ALA CYS HIS GLU THR VAL LEU LYS ILE SEQRES 21 A 271 LEU ASN ALA ASN GLY GLY TYR GLN LYS TYR ARG SEQRES 1 B 271 HIS HIS HIS HIS HIS HIS MET THR ASP LYS THR LEU GLN SEQRES 2 B 271 GLN ILE ASP LYS LEU ILE CYS SER TRP LEU LYS GLN ILE SEQRES 3 B 271 ASP ASN VAL ILE PRO GLN LEU ILE MET GLU MET THR THR SEQRES 4 B 271 GLU THR LYS ARG HIS ARG PHE ASP LEU VAL THR ASN VAL SEQRES 5 B 271 ASP LYS GLN ILE GLN GLN GLN PHE GLN GLN PHE LEU ALA SEQRES 6 B 271 THR TYR PHE PRO GLU HIS GLN LEU LEU ALA GLU GLU LYS SEQRES 7 B 271 SER ASN ALA MET ILE THR ASN GLU ILE ASN HIS LEU TRP SEQRES 8 B 271 ILE MET ASP PRO ILE ASP GLY THR ALA ASN LEU VAL LYS SEQRES 9 B 271 GLN GLN GLU ASP TYR CYS ILE ILE LEU ALA TYR PHE TYR SEQRES 10 B 271 GLU GLY LYS PRO MET LEU SER TYR VAL TYR ASP TYR PRO SEQRES 11 B 271 HIS LYS LYS LEU TYR LYS ALA ILE ARG GLY GLU GLY ALA SEQRES 12 B 271 PHE CYS ASN GLY ILE LYS MET GLU GLU PRO PRO SER LEU SEQRES 13 B 271 LYS LEU GLU ASP ALA ILE ILE SER PHE ASN ALA GLN VAL SEQRES 14 B 271 MET ASN LEU ASP THR VAL GLN ASP LEU PHE ASP ALA SER SEQRES 15 B 271 PHE SER TYR ARG LEU VAL GLY ALA CYS GLY LEU ASP SER SEQRES 16 B 271 MET ARG VAL ALA LYS GLY GLN PHE GLY ALA HIS ILE ASN SEQRES 17 B 271 THR ASN PRO LYS PRO TRP ASP ILE ALA ALA GLN PHE LEU SEQRES 18 B 271 PHE ALA GLU LEU LEU ASN LEU LYS MET THR THR LEU ASP SEQRES 19 B 271 GLY LYS ALA ILE ASP HIS LEU LYS GLY ALA PRO PHE ILE SEQRES 20 B 271 ILE SER ASN LYS ALA CYS HIS GLU THR VAL LEU LYS ILE SEQRES 21 B 271 LEU ASN ALA ASN GLY GLY TYR GLN LYS TYR ARG HET PO4 A 301 5 HET MG A 302 1 HET MG A 303 1 HET MG A 304 1 HET GOL A 305 6 HET MG B 301 1 HET MG B 302 1 HET PO4 B 303 5 HET MG B 304 1 HET GOL B 305 6 HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 MG 6(MG 2+) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 13 HOH *72(H2 O) HELIX 1 1 THR A 5 ASP A 21 1 17 HELIX 2 2 VAL A 23 GLU A 30 1 8 HELIX 3 3 ASN A 45 PHE A 62 1 18 HELIX 4 4 GLY A 92 GLN A 100 1 9 HELIX 5 5 LYS A 151 ASP A 154 5 4 HELIX 6 6 ASN A 165 SER A 176 1 12 HELIX 7 7 ALA A 184 LYS A 194 1 11 HELIX 8 8 LYS A 206 ALA A 211 1 6 HELIX 9 9 ALA A 212 LEU A 220 1 9 HELIX 10 10 CYS A 247 ALA A 257 1 11 HELIX 11 11 ASN A 258 GLY A 260 5 3 HELIX 12 12 LEU B 6 ASN B 22 1 17 HELIX 13 13 VAL B 23 GLU B 30 1 8 HELIX 14 14 ASN B 45 PHE B 62 1 18 HELIX 15 15 GLY B 92 GLN B 100 1 9 HELIX 16 16 TYR B 123 LYS B 126 5 4 HELIX 17 17 LYS B 151 ASP B 154 5 4 HELIX 18 18 ASN B 165 SER B 176 1 12 HELIX 19 19 ALA B 184 LYS B 194 1 11 HELIX 20 20 LYS B 206 ALA B 211 1 6 HELIX 21 21 ALA B 212 ASN B 221 1 10 HELIX 22 22 CYS B 247 ALA B 257 1 11 SHEET 1 A 2 THR A 33 THR A 35 0 SHEET 2 A 2 LEU A 42 THR A 44 -1 O VAL A 43 N GLU A 34 SHEET 1 B 7 GLN A 66 ALA A 69 0 SHEET 2 B 7 HIS A 83 ASP A 91 1 O TRP A 85 N LEU A 68 SHEET 3 B 7 CYS A 104 TYR A 111 -1 O CYS A 104 N ASP A 91 SHEET 4 B 7 LYS A 114 ASP A 122 -1 O TYR A 119 N LEU A 107 SHEET 5 B 7 LYS A 127 ILE A 132 -1 O TYR A 129 N VAL A 120 SHEET 6 B 7 GLY A 136 CYS A 139 -1 O GLY A 136 N ILE A 132 SHEET 7 B 7 ILE A 142 LYS A 143 -1 O ILE A 142 N CYS A 139 SHEET 1 C 5 SER A 178 TYR A 179 0 SHEET 2 C 5 ILE A 156 SER A 158 1 N ILE A 157 O SER A 178 SHEET 3 C 5 ALA A 199 ASN A 202 1 O ALA A 199 N SER A 158 SHEET 4 C 5 PHE A 240 SER A 243 -1 O ILE A 242 N HIS A 200 SHEET 5 C 5 LYS A 223 THR A 226 -1 N LYS A 223 O SER A 243 SHEET 1 D 2 THR B 33 THR B 35 0 SHEET 2 D 2 LEU B 42 THR B 44 -1 O VAL B 43 N GLU B 34 SHEET 1 E 7 GLN B 66 ALA B 69 0 SHEET 2 E 7 HIS B 83 ASP B 91 1 O TRP B 85 N GLN B 66 SHEET 3 E 7 CYS B 104 TYR B 111 -1 O CYS B 104 N ASP B 91 SHEET 4 E 7 LYS B 114 ASP B 122 -1 O LEU B 117 N TYR B 109 SHEET 5 E 7 LYS B 127 ILE B 132 -1 O TYR B 129 N VAL B 120 SHEET 6 E 7 GLY B 136 CYS B 139 -1 O GLY B 136 N ILE B 132 SHEET 7 E 7 ILE B 142 MET B 144 -1 O MET B 144 N ALA B 137 SHEET 1 F 5 SER B 178 TYR B 179 0 SHEET 2 F 5 ILE B 156 PHE B 159 1 N ILE B 157 O SER B 178 SHEET 3 F 5 ALA B 199 ASN B 202 1 O ILE B 201 N SER B 158 SHEET 4 F 5 PHE B 240 SER B 243 -1 O PHE B 240 N ASN B 202 SHEET 5 F 5 LYS B 223 THR B 226 -1 N LYS B 223 O SER B 243 LINK OE2 GLU A 70 MG MG A 303 1555 1555 2.16 LINK OE1 GLU A 70 MG MG A 304 1555 1555 2.25 LINK OD2 ASP A 88 MG MG A 302 1555 1555 2.00 LINK OD1 ASP A 88 MG MG A 303 1555 1555 2.00 LINK O ILE A 90 MG MG A 303 1555 1555 2.26 LINK OD1 ASP A 91 MG MG A 302 1555 1555 2.05 LINK OD1 ASP A 209 MG MG A 302 1555 1555 1.96 LINK O4 PO4 A 301 MG MG A 303 1555 1555 2.16 LINK O1 PO4 A 301 MG MG A 303 1555 1555 2.56 LINK O2 PO4 A 301 MG MG A 304 1555 1555 2.23 LINK O4 PO4 A 301 MG MG A 304 1555 1555 2.58 LINK MG MG A 302 O2 GOL A 305 1555 1555 2.72 LINK MG MG A 302 O HOH A 442 1555 1555 2.85 LINK MG MG A 303 O HOH A 401 1555 1555 2.40 LINK MG MG A 304 O HOH A 418 1555 1555 1.95 LINK MG MG A 304 O HOH A 440 1555 1555 2.50 LINK OE2 GLU B 70 MG MG B 301 1555 1555 1.86 LINK OE1 GLU B 70 MG MG B 302 1555 1555 2.05 LINK OD1 ASP B 88 MG MG B 301 1555 1555 1.97 LINK OD2 ASP B 88 MG MG B 304 1555 1555 2.27 LINK O ILE B 90 MG MG B 301 1555 1555 2.07 LINK OD1 ASP B 91 MG MG B 304 1555 1555 2.38 LINK OD1 ASP B 209 MG MG B 304 1555 1555 2.07 LINK MG MG B 301 O4 PO4 B 303 1555 1555 2.27 LINK MG MG B 301 O3 PO4 B 303 1555 1555 2.35 LINK MG MG B 301 O HOH B 427 1555 1555 2.22 LINK MG MG B 302 O1 PO4 B 303 1555 1555 2.35 LINK MG MG B 302 O4 PO4 B 303 1555 1555 2.46 LINK MG MG B 302 O HOH B 428 1555 1555 2.32 LINK MG MG B 302 O HOH B 429 1555 1555 1.84 LINK MG MG B 302 O HOH B 430 1555 1555 2.14 LINK O1 PO4 B 303 MG MG B 304 1555 1555 2.97 LINK MG MG B 304 O1 GOL B 305 1555 1555 2.33 CISPEP 1 ALA A 75 MET A 76 0 -22.91 CISPEP 2 THR A 78 ASN A 79 0 7.72 CISPEP 3 ASN A 79 GLU A 80 0 11.30 CISPEP 4 ALA B 75 MET B 76 0 -13.91 SITE 1 AC1 14 GLU A 70 ASP A 88 ILE A 90 ASP A 91 SITE 2 AC1 14 GLY A 92 THR A 93 ASP A 209 MG A 302 SITE 3 AC1 14 MG A 303 MG A 304 GOL A 305 HOH A 431 SITE 4 AC1 14 HOH A 441 HOH A 442 SITE 1 AC2 7 ASP A 88 ASP A 91 ASP A 209 PO4 A 301 SITE 2 AC2 7 MG A 303 GOL A 305 HOH A 442 SITE 1 AC3 6 GLU A 70 ASP A 88 ILE A 90 PO4 A 301 SITE 2 AC3 6 MG A 302 HOH A 401 SITE 1 AC4 4 GLU A 70 PO4 A 301 HOH A 418 HOH A 440 SITE 1 AC5 7 ASP A 91 ALA A 184 CYS A 185 ASP A 209 SITE 2 AC5 7 PO4 A 301 MG A 302 HOH A 431 SITE 1 AC6 6 GLU B 70 ASP B 88 ILE B 90 PO4 B 303 SITE 2 AC6 6 MG B 304 HOH B 427 SITE 1 AC7 5 GLU B 70 PO4 B 303 HOH B 428 HOH B 429 SITE 2 AC7 5 HOH B 430 SITE 1 AC8 13 GLU B 70 ASP B 88 ILE B 90 ASP B 91 SITE 2 AC8 13 GLY B 92 THR B 93 ASP B 209 MG B 301 SITE 3 AC8 13 MG B 302 MG B 304 GOL B 305 HOH B 424 SITE 4 AC8 13 HOH B 427 SITE 1 AC9 6 ASP B 88 ASP B 91 ASP B 209 MG B 301 SITE 2 AC9 6 PO4 B 303 GOL B 305 SITE 1 BC1 7 ASP B 91 GLY B 183 ALA B 184 CYS B 185 SITE 2 BC1 7 ASP B 209 PO4 B 303 MG B 304 CRYST1 60.428 62.455 140.497 90.00 90.00 90.00 P 21 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016549 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016012 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007118 0.00000