HEADER TOXIN 12-MAR-14 4PU5 TITLE SHEWANELLA ONEIDENSIS TOXIN ANTITOXIN SYSTEM TOXIN PROTEIN HIPA BOUND TITLE 2 WITH AMPPNP AND MG COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOXIN-ANTITOXIN SYSTEM TOXIN HIPA FAMILY; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS; SOURCE 3 ORGANISM_TAXID: 211586; SOURCE 4 STRAIN: MR-1; SOURCE 5 GENE: SO_0706; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TOXIN ANTITOXIN SYSTEM, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.WEN,E.BEHIELS,J.FELIX,J.ELEGHEERT,B.VERGAUWEN,B.DEVREESE,S.SAVVIDES REVDAT 4 20-SEP-23 4PU5 1 REMARK SEQADV LINK REVDAT 3 07-MAR-18 4PU5 1 REMARK REVDAT 2 17-SEP-14 4PU5 1 JRNL REVDAT 1 06-AUG-14 4PU5 0 JRNL AUTH Y.WEN,E.BEHIELS,J.FELIX,J.ELEGHEERT,B.VERGAUWEN,B.DEVREESE, JRNL AUTH 2 S.N.SAVVIDES JRNL TITL THE BACTERIAL ANTITOXIN HIPB ESTABLISHES A TERNARY COMPLEX JRNL TITL 2 WITH OPERATOR DNA AND PHOSPHORYLATED TOXIN HIPA TO REGULATE JRNL TITL 3 BACTERIAL PERSISTENCE. JRNL REF NUCLEIC ACIDS RES. V. 42 10134 2014 JRNL REFN ISSN 0305-1048 JRNL PMID 25056321 JRNL DOI 10.1093/NAR/GKU665 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1287) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 45086 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2255 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.6200 - 4.6198 1.00 2880 152 0.1711 0.1721 REMARK 3 2 4.6198 - 3.6674 1.00 2773 146 0.1283 0.1458 REMARK 3 3 3.6674 - 3.2040 1.00 2715 143 0.1450 0.1818 REMARK 3 4 3.2040 - 2.9111 1.00 2709 143 0.1499 0.1793 REMARK 3 5 2.9111 - 2.7025 1.00 2705 142 0.1484 0.1678 REMARK 3 6 2.7025 - 2.5431 1.00 2672 141 0.1428 0.1549 REMARK 3 7 2.5431 - 2.4158 1.00 2685 141 0.1445 0.1581 REMARK 3 8 2.4158 - 2.3106 1.00 2652 139 0.1423 0.1476 REMARK 3 9 2.3106 - 2.2217 1.00 2696 142 0.1566 0.1744 REMARK 3 10 2.2217 - 2.1450 1.00 2663 141 0.1499 0.1795 REMARK 3 11 2.1450 - 2.0780 1.00 2635 138 0.1596 0.1836 REMARK 3 12 2.0780 - 2.0186 1.00 2658 140 0.1633 0.1859 REMARK 3 13 2.0186 - 1.9654 1.00 2656 140 0.1825 0.2340 REMARK 3 14 1.9654 - 1.9175 1.00 2654 140 0.2109 0.2025 REMARK 3 15 1.9175 - 1.8739 1.00 2651 140 0.2303 0.2645 REMARK 3 16 1.8739 - 1.8340 0.92 2427 127 0.2655 0.2916 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3578 REMARK 3 ANGLE : 0.948 4855 REMARK 3 CHIRALITY : 0.052 537 REMARK 3 PLANARITY : 0.003 626 REMARK 3 DIHEDRAL : 13.459 1322 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 54.7179 37.4797 45.2995 REMARK 3 T TENSOR REMARK 3 T11: 0.0722 T22: 0.0634 REMARK 3 T33: 0.1158 T12: -0.0133 REMARK 3 T13: 0.0093 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.8706 L22: 0.8746 REMARK 3 L33: 2.8194 L12: 0.0624 REMARK 3 L13: -0.0677 L23: 0.2707 REMARK 3 S TENSOR REMARK 3 S11: 0.0389 S12: 0.0226 S13: -0.0389 REMARK 3 S21: -0.0875 S22: -0.0237 S23: -0.0340 REMARK 3 S31: 0.1028 S32: -0.0976 S33: 0.0019 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PU5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000085221. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45100 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 44.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.170 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 3DNV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CHLORIDE, 0.1 M HEPES REMARK 280 SODIUM, PH 7.0, 25% PEG4000, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.35000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.16000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.91500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.16000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.35000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.91500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 111 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG A 383 O HOH A 935 1.47 REMARK 500 HH12 ARG A 383 O HOH A 1083 1.48 REMARK 500 HH12 ARG A 380 O HOH A 908 1.49 REMARK 500 O HOH A 842 O HOH A 855 1.96 REMARK 500 NE ARG A 383 O HOH A 935 2.00 REMARK 500 NH1 ARG A 380 O HOH A 908 2.01 REMARK 500 OE2 GLU A 130 O HOH A 1058 2.03 REMARK 500 OD1 ASN A 226 O HOH A 765 2.07 REMARK 500 O HOH A 942 O HOH A 966 2.07 REMARK 500 O HOH A 1055 O HOH A 1074 2.08 REMARK 500 O HOH A 761 O HOH A 937 2.11 REMARK 500 O HOH A 942 O HOH A 947 2.11 REMARK 500 O HOH A 999 O HOH A 1005 2.14 REMARK 500 O HOH A 813 O HOH A 968 2.16 REMARK 500 O HOH A 1023 O HOH A 1027 2.18 REMARK 500 NH1 ARG A 383 O HOH A 1083 2.19 REMARK 500 OE1 GLN A 231 O HOH A 743 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 972 O HOH A 974 3745 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 71 -166.23 -113.11 REMARK 500 SER A 147 34.03 -140.44 REMARK 500 LYS A 162 -70.65 -114.67 REMARK 500 TYR A 356 -167.09 -122.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 504 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 305 O REMARK 620 2 GLN A 341 O 81.5 REMARK 620 3 HOH A 644 O 92.6 162.5 REMARK 620 4 HOH A 766 O 132.5 102.4 93.7 REMARK 620 5 HOH A 963 O 119.0 81.1 87.5 108.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 311 OD1 REMARK 620 2 ASP A 328 OD2 89.8 REMARK 620 3 ANP A 503 O2A 109.9 91.5 REMARK 620 4 ANP A 503 O2G 95.9 83.4 153.7 REMARK 620 5 HOH A 907 O 89.0 175.8 92.7 92.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 328 OD1 REMARK 620 2 ASP A 328 OD2 59.4 REMARK 620 3 ANP A 503 O3G 160.6 101.4 REMARK 620 4 ANP A 503 O2B 89.8 90.1 88.0 REMARK 620 5 HOH A 857 O 92.6 88.9 88.9 176.4 REMARK 620 6 HOH A 858 O 98.1 157.4 101.2 91.2 91.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PU3 RELATED DB: PDB REMARK 900 RELATED ID: 4PU4 RELATED DB: PDB DBREF 4PU5 A 1 433 UNP Q8EIX3 Q8EIX3_SHEON 1 433 SEQADV 4PU5 MET A -19 UNP Q8EIX3 EXPRESSION TAG SEQADV 4PU5 GLY A -18 UNP Q8EIX3 EXPRESSION TAG SEQADV 4PU5 SER A -17 UNP Q8EIX3 EXPRESSION TAG SEQADV 4PU5 SER A -16 UNP Q8EIX3 EXPRESSION TAG SEQADV 4PU5 HIS A -15 UNP Q8EIX3 EXPRESSION TAG SEQADV 4PU5 HIS A -14 UNP Q8EIX3 EXPRESSION TAG SEQADV 4PU5 HIS A -13 UNP Q8EIX3 EXPRESSION TAG SEQADV 4PU5 HIS A -12 UNP Q8EIX3 EXPRESSION TAG SEQADV 4PU5 HIS A -11 UNP Q8EIX3 EXPRESSION TAG SEQADV 4PU5 HIS A -10 UNP Q8EIX3 EXPRESSION TAG SEQADV 4PU5 SER A -9 UNP Q8EIX3 EXPRESSION TAG SEQADV 4PU5 SER A -8 UNP Q8EIX3 EXPRESSION TAG SEQADV 4PU5 GLY A -7 UNP Q8EIX3 EXPRESSION TAG SEQADV 4PU5 LEU A -6 UNP Q8EIX3 EXPRESSION TAG SEQADV 4PU5 VAL A -5 UNP Q8EIX3 EXPRESSION TAG SEQADV 4PU5 PRO A -4 UNP Q8EIX3 EXPRESSION TAG SEQADV 4PU5 ARG A -3 UNP Q8EIX3 EXPRESSION TAG SEQADV 4PU5 GLY A -2 UNP Q8EIX3 EXPRESSION TAG SEQADV 4PU5 SER A -1 UNP Q8EIX3 EXPRESSION TAG SEQADV 4PU5 HIS A 0 UNP Q8EIX3 EXPRESSION TAG SEQRES 1 A 453 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 453 LEU VAL PRO ARG GLY SER HIS MET SER THR ALA LYS THR SEQRES 3 A 453 LEU THR LEU GLU MET HIS LEU GLY ASP LEU MET ILE GLY SEQRES 4 A 453 GLU LEU SER PHE ASP ALA THR ALA ASP THR PHE ALA VAL SEQRES 5 A 453 HIS TYR THR LYS ASP TRP GLN GLN SER GLY PHE PRO LEU SEQRES 6 A 453 SER PRO THR ILE PRO LEU ASP GLY THR GLY THR SER ASN SEQRES 7 A 453 GLN ILE SER MET PHE LEU VAL ASN LEU LEU PRO GLU ASN SEQRES 8 A 453 LYS GLY LEU ASP TYR LEU ILE GLU SER LEU GLY VAL SER SEQRES 9 A 453 LYS GLY ASN THR PHE ALA LEU ILE ARG ALA ILE GLY LEU SEQRES 10 A 453 ASP THR ALA GLY ALA ILE ALA PHE VAL PRO LYS GLY ALA SEQRES 11 A 453 LEU LEU PRO GLU THR GLN LEU ARG PRO ILE LYS ALA GLU SEQRES 12 A 453 GLU VAL ILE GLN ARG ILE GLU ASP PRO THR MET TRP PRO SEQRES 13 A 453 MET GLU ILE TRP ASP GLY LYS PRO ARG LEU SER VAL ALA SEQRES 14 A 453 GLY VAL GLN PRO LYS LEU ASN LEU PHE TYR ASN GLY LYS SEQRES 15 A 453 GLU PHE ALA PHE ALA GLU GLY THR LEU SER SER THR HIS SEQRES 16 A 453 ILE VAL LYS PHE GLU LYS TYR HIS HIS LEU VAL ILE ASN SEQRES 17 A 453 GLU PHE ILE THR MET ARG LEU ALA LYS VAL LEU GLY MET SEQRES 18 A 453 ASN VAL ALA ASN VAL ASP ILE VAL HIS PHE GLY ARG TYR SEQRES 19 A 453 LYS ALA LEU CYS VAL GLU ARG PHE ASP ARG ARG ASN ILE SEQRES 20 A 453 PRO GLY GLU GLN ARG VAL LEU ARG ARG HIS ILE VAL ASP SEQRES 21 A 453 SER CYS GLN ALA LEU GLY PHE SER VAL SER LYS LYS TYR SEQRES 22 A 453 GLU ARG ASN PHE GLY THR GLY ARG ASP VAL LYS ASP ILE SEQRES 23 A 453 ARG GLU GLY VAL SER PHE ASN ARG LEU PHE SER LEU ALA SEQRES 24 A 453 ALA LYS CYS ARG ASN PRO VAL ALA ALA LYS GLN ASP MET SEQRES 25 A 453 LEU GLN TRP ALA LEU PHE ASN LEU LEU THR GLY ASN ALA SEQRES 26 A 453 ASP ALA HIS GLY LYS ASN TYR SER PHE PHE MET THR PRO SEQRES 27 A 453 SER GLY MET GLU PRO THR PRO TRP TYR ASP LEU VAL SER SEQRES 28 A 453 VAL ASP MET TYR GLU ASP PHE GLU GLN GLN LEU ALA MET SEQRES 29 A 453 ALA ILE ASP ASP GLU PHE ASP PRO ASN SER ILE TYR ALA SEQRES 30 A 453 TYR GLN LEU ALA ALA PHE MET ASP GLY LEU GLY LEU PRO SEQRES 31 A 453 ARG ASN LEU LEU ILE SER ASN LEU THR ARG ILE ALA ARG SEQRES 32 A 453 ARG ILE PRO GLN ALA ILE ALA GLU VAL ILE LEU MET LEU SEQRES 33 A 453 PRO PRO LEU ASP GLU ASP GLU ALA SER PHE VAL ALA HIS SEQRES 34 A 453 TYR LYS THR GLN LEU LEU ALA ARG CYS GLU ARG TYR LEU SEQRES 35 A 453 GLY PHE VAL ASP GLU VAL ARG ASP VAL GLU VAL HET MG A 501 1 HET MG A 502 1 HET ANP A 503 44 HET NA A 504 1 HETNAM MG MAGNESIUM ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM NA SODIUM ION FORMUL 2 MG 2(MG 2+) FORMUL 4 ANP C10 H17 N6 O12 P3 FORMUL 5 NA NA 1+ FORMUL 6 HOH *486(H2 O) HELIX 1 1 SER A 2 LEU A 7 1 6 HELIX 2 2 THR A 35 GLY A 42 1 8 HELIX 3 3 THR A 56 ASN A 66 1 11 HELIX 4 4 ASN A 71 GLY A 82 1 12 HELIX 5 5 ASN A 87 GLY A 96 1 10 HELIX 6 6 LYS A 121 ASP A 131 1 11 HELIX 7 7 HIS A 184 LEU A 199 1 16 HELIX 8 8 SER A 241 GLY A 246 1 6 HELIX 9 9 SER A 248 LYS A 252 5 5 HELIX 10 10 SER A 271 LEU A 278 1 8 HELIX 11 11 ALA A 279 CYS A 282 5 4 HELIX 12 12 ASN A 284 GLY A 303 1 20 HELIX 13 13 SER A 331 TYR A 335 5 5 HELIX 14 14 ASP A 351 ILE A 355 5 5 HELIX 15 15 TYR A 356 GLY A 368 1 13 HELIX 16 16 PRO A 370 LEU A 394 1 25 HELIX 17 17 ASP A 400 GLY A 423 1 24 HELIX 18 18 PHE A 424 VAL A 431 5 8 SHEET 1 A 4 THR A 29 TYR A 34 0 SHEET 2 A 4 LEU A 16 ASP A 24 -1 N GLU A 20 O HIS A 33 SHEET 3 A 4 THR A 8 LEU A 13 -1 N MET A 11 O GLY A 19 SHEET 4 A 4 ILE A 103 PRO A 107 -1 O VAL A 106 N GLU A 10 SHEET 1 B 6 GLN A 116 PRO A 119 0 SHEET 2 B 6 PHE A 164 GLU A 168 -1 O PHE A 166 N ARG A 118 SHEET 3 B 6 LYS A 154 TYR A 159 -1 N PHE A 158 O ALA A 165 SHEET 4 B 6 HIS A 175 LYS A 178 -1 O VAL A 177 N LEU A 155 SHEET 5 B 6 TYR A 214 GLU A 220 -1 O VAL A 219 N ILE A 176 SHEET 6 B 6 VAL A 206 PHE A 211 -1 N ASP A 207 O CYS A 218 SHEET 1 C 2 ILE A 139 TRP A 140 0 SHEET 2 C 2 LYS A 143 PRO A 144 -1 O LYS A 143 N TRP A 140 SHEET 1 D 2 ARG A 224 ASN A 226 0 SHEET 2 D 2 VAL A 233 ARG A 235 -1 O LEU A 234 N ARG A 225 SHEET 1 E 3 ILE A 238 ASP A 240 0 SHEET 2 E 3 SER A 313 THR A 317 -1 O PHE A 314 N VAL A 239 SHEET 3 E 3 GLY A 320 PRO A 323 -1 O GLU A 322 N PHE A 315 LINK O ALA A 305 NA NA A 504 1555 1555 2.46 LINK OD1 ASN A 311 MG MG A 502 1555 1555 1.99 LINK OD1 ASP A 328 MG MG A 501 1555 1555 2.20 LINK OD2 ASP A 328 MG MG A 501 1555 1555 2.22 LINK OD2 ASP A 328 MG MG A 502 1555 1555 2.07 LINK O GLN A 341 NA NA A 504 1555 1555 2.31 LINK MG MG A 501 O3G ANP A 503 1555 1555 2.05 LINK MG MG A 501 O2B ANP A 503 1555 1555 2.08 LINK MG MG A 501 O HOH A 857 1555 1555 2.12 LINK MG MG A 501 O HOH A 858 1555 1555 1.99 LINK MG MG A 502 O2A ANP A 503 1555 1555 1.97 LINK MG MG A 502 O2G ANP A 503 1555 1555 2.24 LINK MG MG A 502 O HOH A 907 1555 1555 2.19 LINK NA NA A 504 O HOH A 644 1555 1555 2.42 LINK NA NA A 504 O HOH A 766 1555 1555 2.34 LINK NA NA A 504 O HOH A 963 1555 1555 2.63 SITE 1 AC1 4 ASP A 328 ANP A 503 HOH A 857 HOH A 858 SITE 1 AC2 4 ASN A 311 ASP A 328 ANP A 503 HOH A 907 SITE 1 AC3 31 ALA A 149 GLY A 150 VAL A 151 GLN A 152 SITE 2 AC3 31 LYS A 154 ILE A 176 LYS A 178 ALA A 204 SITE 3 AC3 31 VAL A 219 GLU A 220 ARG A 221 PHE A 222 SITE 4 AC3 31 ASP A 223 ASP A 306 HIS A 308 LYS A 310 SITE 5 AC3 31 ASN A 311 TYR A 327 ASP A 328 MG A 501 SITE 6 AC3 31 MG A 502 HOH A 611 HOH A 801 HOH A 802 SITE 7 AC3 31 HOH A 803 HOH A 857 HOH A 858 HOH A 859 SITE 8 AC3 31 HOH A 890 HOH A 907 HOH A 921 SITE 1 AC4 5 ALA A 305 GLN A 341 HOH A 644 HOH A 766 SITE 2 AC4 5 HOH A 963 CRYST1 60.700 75.830 110.320 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016474 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013187 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009065 0.00000