HEADER DNA BINDING PROTEIN 13-MAR-14 4PUG TITLE BOLA1 FROM ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: BOLA LIKE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 64-160; COMPND 5 SYNONYM: BOLA-LIKE PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT1G55805, AT1G55805; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRESS-RESPONSIVE PROTEIN, TRANSCRIPTIONAL REGULATOR, MORPHOGEN, KEYWDS 2 TRANSCRIPTION, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.RORET,C.DIDIERJEAN REVDAT 3 20-SEP-23 4PUG 1 SEQADV REVDAT 2 17-SEP-14 4PUG 1 JRNL REVDAT 1 23-JUL-14 4PUG 0 JRNL AUTH T.RORET,P.TSAN,J.COUTURIER,B.ZHANG,M.K.JOHNSON,N.ROUHIER, JRNL AUTH 2 C.DIDIERJEAN JRNL TITL STRUCTURAL AND SPECTROSCOPIC INSIGHTS INTO BOLA-GLUTAREDOXIN JRNL TITL 2 COMPLEXES. JRNL REF J.BIOL.CHEM. V. 289 24588 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 25012657 JRNL DOI 10.1074/JBC.M114.572701 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 12798 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 625 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.9801 - 3.1716 1.00 3195 150 0.1832 0.2005 REMARK 3 2 3.1716 - 2.5175 1.00 3025 150 0.2000 0.2179 REMARK 3 3 2.5175 - 2.1993 1.00 3010 156 0.2110 0.2380 REMARK 3 4 2.1993 - 1.9982 0.99 2934 169 0.2381 0.2989 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 43.33 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.98110 REMARK 3 B22 (A**2) : -11.64990 REMARK 3 B33 (A**2) : 18.73290 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1477 REMARK 3 ANGLE : 0.849 1986 REMARK 3 CHIRALITY : 0.059 222 REMARK 3 PLANARITY : 0.004 259 REMARK 3 DIHEDRAL : 13.964 576 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PUG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000085232. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979733 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12798 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.998 REMARK 200 RESOLUTION RANGE LOW (A) : 44.969 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.35100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4PUI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG4000, 6% 2-PROPANOL, 6% 2.5 REMARK 280 HEXANEDIOL, 4% XYLITOL AND 0.07 M SODIUM ACETATE, OIL MICROBATCH REMARK 280 METHOD, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.40900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.40900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 15.04400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 89.93750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 15.04400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 89.93750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.40900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 15.04400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 89.93750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.40900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 15.04400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 89.93750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 215 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 239 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 232 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 63 REMARK 465 SER A 158 REMARK 465 LYS A 159 REMARK 465 ASP A 160 REMARK 465 MET B 63 REMARK 465 ALA B 64 REMARK 465 GLY B 96 REMARK 465 HIS B 97 REMARK 465 ALA B 98 REMARK 465 GLY B 99 REMARK 465 MET B 100 REMARK 465 LYS B 101 REMARK 465 GLY B 102 REMARK 465 ARG B 103 REMARK 465 THR B 104 REMARK 465 SER B 158 REMARK 465 LYS B 159 REMARK 465 ASP B 160 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 81 54.81 34.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PUH RELATED DB: PDB REMARK 900 RELATED ID: 4PUI RELATED DB: PDB DBREF 4PUG A 64 160 UNP Q682I1 Q682I1_ARATH 64 160 DBREF 4PUG B 64 160 UNP Q682I1 Q682I1_ARATH 64 160 SEQADV 4PUG MET A 63 UNP Q682I1 INITIATING METHIONINE SEQADV 4PUG MET B 63 UNP Q682I1 INITIATING METHIONINE SEQRES 1 A 98 MET ALA ILE GLU ASN ARG ALA SER ARG MET ARG GLU LYS SEQRES 2 A 98 LEU GLN LYS GLU LEU GLU PRO VAL GLU LEU VAL ILE GLU SEQRES 3 A 98 ASP VAL SER TYR GLN HIS ALA GLY HIS ALA GLY MET LYS SEQRES 4 A 98 GLY ARG THR ASP ASP GLU THR HIS PHE ASN VAL LYS ILE SEQRES 5 A 98 VAL SER LYS GLY PHE GLU GLY MET ASN LEU VAL LYS ARG SEQRES 6 A 98 HIS ARG LEU VAL TYR HIS LEU LEU ARG GLU GLU LEU ASP SEQRES 7 A 98 THR GLY LEU HIS ALA LEU SER ILE VAL SER LYS THR PRO SEQRES 8 A 98 SER GLU SER PRO SER LYS ASP SEQRES 1 B 98 MET ALA ILE GLU ASN ARG ALA SER ARG MET ARG GLU LYS SEQRES 2 B 98 LEU GLN LYS GLU LEU GLU PRO VAL GLU LEU VAL ILE GLU SEQRES 3 B 98 ASP VAL SER TYR GLN HIS ALA GLY HIS ALA GLY MET LYS SEQRES 4 B 98 GLY ARG THR ASP ASP GLU THR HIS PHE ASN VAL LYS ILE SEQRES 5 B 98 VAL SER LYS GLY PHE GLU GLY MET ASN LEU VAL LYS ARG SEQRES 6 B 98 HIS ARG LEU VAL TYR HIS LEU LEU ARG GLU GLU LEU ASP SEQRES 7 B 98 THR GLY LEU HIS ALA LEU SER ILE VAL SER LYS THR PRO SEQRES 8 B 98 SER GLU SER PRO SER LYS ASP FORMUL 3 HOH *206(H2 O) HELIX 1 1 ASN A 67 GLU A 81 1 15 HELIX 2 2 VAL A 90 ALA A 95 1 6 HELIX 3 3 LYS A 117 GLU A 120 5 4 HELIX 4 4 ASN A 123 LEU A 135 1 13 HELIX 5 5 LEU A 135 THR A 141 1 7 HELIX 6 6 ASN B 67 GLU B 81 1 15 HELIX 7 7 SER B 91 HIS B 94 5 4 HELIX 8 8 LYS B 117 GLU B 120 5 4 HELIX 9 9 ASN B 123 LEU B 135 1 13 HELIX 10 10 LEU B 135 ASP B 140 1 6 SHEET 1 A 3 GLU A 84 ASP A 89 0 SHEET 2 A 3 HIS A 109 VAL A 115 -1 O VAL A 115 N GLU A 84 SHEET 3 A 3 ALA A 145 LYS A 151 1 O SER A 147 N VAL A 112 SHEET 1 B 3 GLU B 84 ASP B 89 0 SHEET 2 B 3 HIS B 109 VAL B 115 -1 O VAL B 115 N GLU B 84 SHEET 3 B 3 ALA B 145 LYS B 151 1 O SER B 147 N VAL B 112 CRYST1 30.088 179.875 66.818 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033236 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005559 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014966 0.00000