HEADER PROTEIN BINDING 13-MAR-14 4PUI TITLE BOLA DOMAIN OF SUFE1 FROM ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUFE-LIKE PROTEIN, CHLOROPLASTIC; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 277-371; COMPND 5 SYNONYM: PROTEIN EMBRYO DEFECTIVE 1374, PROTEIN SULFUR E, ATSUFE, COMPND 6 PROTEIN SULFUR E 1, ATSUFE1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: SUFE, EMB1374, SUFE1, AT4G26500, M3E9.70; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRESS-RESPONSIVE PROTEIN, METAL BINDING PROTEIN, PROTEIN BINDING KEYWDS 2 PROTEIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR T.RORET,C.DIDIERJEAN REVDAT 3 20-SEP-23 4PUI 1 SEQADV REVDAT 2 17-SEP-14 4PUI 1 JRNL REVDAT 1 23-JUL-14 4PUI 0 JRNL AUTH T.RORET,P.TSAN,J.COUTURIER,B.ZHANG,M.K.JOHNSON,N.ROUHIER, JRNL AUTH 2 C.DIDIERJEAN JRNL TITL STRUCTURAL AND SPECTROSCOPIC INSIGHTS INTO BOLA-GLUTAREDOXIN JRNL TITL 2 COMPLEXES. JRNL REF J.BIOL.CHEM. V. 289 24588 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 25012657 JRNL DOI 10.1074/JBC.M114.572701 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 20573 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1053 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1987 - 3.3959 1.00 2537 151 0.1735 0.1734 REMARK 3 2 3.3959 - 2.6955 1.00 2432 154 0.1861 0.2401 REMARK 3 3 2.6955 - 2.3548 1.00 2475 112 0.1912 0.1974 REMARK 3 4 2.3548 - 2.1395 1.00 2433 141 0.1914 0.2250 REMARK 3 5 2.1395 - 1.9861 1.00 2414 110 0.1900 0.1880 REMARK 3 6 1.9861 - 1.8690 1.00 2431 132 0.2261 0.3027 REMARK 3 7 1.8690 - 1.7754 1.00 2423 135 0.2455 0.2722 REMARK 3 8 1.7754 - 1.6981 0.97 2368 118 0.2882 0.3319 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.60 REMARK 3 K_SOL : 0.42 REMARK 3 B_SOL : 62.56 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.83880 REMARK 3 B22 (A**2) : -0.11590 REMARK 3 B33 (A**2) : 6.95470 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.07800 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1386 REMARK 3 ANGLE : 1.066 1860 REMARK 3 CHIRALITY : 0.067 211 REMARK 3 PLANARITY : 0.005 241 REMARK 3 DIHEDRAL : 14.134 532 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PUI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000085234. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979110 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20573 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.698 REMARK 200 RESOLUTION RANGE LOW (A) : 46.182 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.03200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.35700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1V60 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG20000, 6% ETHYLENE GLYCOL, 0.02 REMARK 280 M TRIMETHYLAMINE HCL AND 0.1 M MES, PH 6.5, OIL MICROBATCH REMARK 280 METHOD, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.91650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 15.81700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.91650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 15.81700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 276 REMARK 465 GLY A 309 REMARK 465 HIS A 310 REMARK 465 ALA A 311 REMARK 465 ALA A 312 REMARK 465 VAL A 313 REMARK 465 ARG A 314 REMARK 465 GLY A 315 REMARK 465 SER A 316 REMARK 465 ALA A 317 REMARK 465 GLY A 318 REMARK 465 MET B 276 REMARK 465 ALA B 311 REMARK 465 ALA B 312 REMARK 465 VAL B 313 REMARK 465 ARG B 314 REMARK 465 GLY B 315 REMARK 465 SER B 316 REMARK 465 ALA B 317 REMARK 465 GLY B 318 REMARK 465 ASP B 319 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 294 54.75 37.25 REMARK 500 ASP A 320 -12.00 91.65 REMARK 500 SER A 356 33.48 -155.74 REMARK 500 ASP B 294 60.87 28.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PUH RELATED DB: PDB DBREF 4PUI A 277 371 UNP Q84W65 SUFE_ARATH 277 371 DBREF 4PUI B 277 371 UNP Q84W65 SUFE_ARATH 277 371 SEQADV 4PUI MET A 276 UNP Q84W65 INITIATING METHIONINE SEQADV 4PUI MET B 276 UNP Q84W65 INITIATING METHIONINE SEQRES 1 A 96 MET ALA LEU GLY SER ARG GLY MET ARG ILE ARG GLU LYS SEQRES 2 A 96 LEU GLU LYS GLU LEU ASP PRO VAL GLU LEU GLU VAL GLU SEQRES 3 A 96 ASP VAL SER TYR GLN HIS ALA GLY HIS ALA ALA VAL ARG SEQRES 4 A 96 GLY SER ALA GLY ASP ASP GLY GLU THR HIS PHE ASN LEU SEQRES 5 A 96 ARG ILE VAL SER ASP ALA PHE GLN GLY LYS SER LEU VAL SEQRES 6 A 96 LYS ARG HIS ARG LEU ILE TYR ASP LEU LEU GLN ASP GLU SEQRES 7 A 96 LEU LYS SER GLY LEU HIS ALA LEU SER ILE VAL ALA LYS SEQRES 8 A 96 THR PRO ALA GLU VAL SEQRES 1 B 96 MET ALA LEU GLY SER ARG GLY MET ARG ILE ARG GLU LYS SEQRES 2 B 96 LEU GLU LYS GLU LEU ASP PRO VAL GLU LEU GLU VAL GLU SEQRES 3 B 96 ASP VAL SER TYR GLN HIS ALA GLY HIS ALA ALA VAL ARG SEQRES 4 B 96 GLY SER ALA GLY ASP ASP GLY GLU THR HIS PHE ASN LEU SEQRES 5 B 96 ARG ILE VAL SER ASP ALA PHE GLN GLY LYS SER LEU VAL SEQRES 6 B 96 LYS ARG HIS ARG LEU ILE TYR ASP LEU LEU GLN ASP GLU SEQRES 7 B 96 LEU LYS SER GLY LEU HIS ALA LEU SER ILE VAL ALA LYS SEQRES 8 B 96 THR PRO ALA GLU VAL FORMUL 3 HOH *165(H2 O) HELIX 1 1 GLY A 279 ASP A 294 1 16 HELIX 2 2 SER A 304 HIS A 307 5 4 HELIX 3 3 ASP A 332 GLN A 335 5 4 HELIX 4 4 SER A 338 LEU A 350 1 13 HELIX 5 5 LEU A 350 LYS A 355 1 6 HELIX 6 6 THR A 367 VAL A 371 5 5 HELIX 7 7 GLY B 279 ASP B 294 1 16 HELIX 8 8 SER B 304 ALA B 308 5 5 HELIX 9 9 ASP B 332 GLN B 335 5 4 HELIX 10 10 SER B 338 LEU B 350 1 13 HELIX 11 11 LEU B 350 SER B 356 1 7 HELIX 12 12 THR B 367 VAL B 371 5 5 SHEET 1 A 3 GLU A 297 ASP A 302 0 SHEET 2 A 3 HIS A 324 VAL A 330 -1 O ASN A 326 N GLU A 301 SHEET 3 A 3 ALA A 360 LYS A 366 1 O SER A 362 N LEU A 327 SHEET 1 B 3 GLU B 297 ASP B 302 0 SHEET 2 B 3 HIS B 324 VAL B 330 -1 O VAL B 330 N GLU B 297 SHEET 3 B 3 ALA B 360 LYS B 366 1 O SER B 362 N LEU B 327 CRYST1 95.833 31.634 68.631 90.00 116.83 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010435 0.000000 0.005277 0.00000 SCALE2 0.000000 0.031612 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016328 0.00000