HEADER TRANSFERASE/TRANSFERASE INHIBITOR 13-MAR-14 4PUL TITLE TRNA-GUANINE TRANSGLYCOSYLASE (TGT) MUTANT D102N IN COMPLEX WITH 6- TITLE 2 AMINO-2-(METHYLAMINO)-1H,7H,8H-IMIDAZO[4,5-G]QUINAZOLIN-8-ONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUEUINE TRNA-RIBOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GUANINE INSERTION ENZYME, TRNA-GUANINE TRANSGLYCOSYLASE; COMPND 5 EC: 2.4.2.29; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZYMOMONAS MOBILIS SUBSP. MOBILIS; SOURCE 3 ORGANISM_TAXID: 264203; SOURCE 4 STRAIN: ATCC 31821 / ZM4 / CP4; SOURCE 5 GENE: TGT, ZMO0363; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET9D-ZM4-D102N KEYWDS TRANSFERASE, GUANINE EXCHANGE ENZYME, GUANINE, PREQ1, TRNA, KEYWDS 2 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.NEEB,A.HEINE,G.KLEBE REVDAT 4 20-SEP-23 4PUL 1 REMARK SEQADV LINK REVDAT 3 22-NOV-17 4PUL 1 REMARK REVDAT 2 23-JUL-14 4PUL 1 JRNL REVDAT 1 16-JUL-14 4PUL 0 JRNL AUTH M.NEEB,P.CZODROWSKI,A.HEINE,L.J.BARANDUN,C.HOHN,F.DIEDERICH, JRNL AUTH 2 G.KLEBE JRNL TITL CHASING PROTONS: HOW ISOTHERMAL TITRATION CALORIMETRY, JRNL TITL 2 MUTAGENESIS, AND PKA CALCULATIONS TRACE THE LOCUS OF CHARGE JRNL TITL 3 IN LIGAND BINDING TO A TRNA-BINDING ENZYME. JRNL REF J.MED.CHEM. V. 57 5554 2014 JRNL REFN ISSN 0022-2623 JRNL PMID 24955548 JRNL DOI 10.1021/JM500401X REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 3 NUMBER OF REFLECTIONS : 43719 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 70.3359 - 3.4408 0.98 5140 159 0.1604 0.1597 REMARK 3 2 3.4408 - 2.7310 0.99 5113 159 0.1545 0.1757 REMARK 3 3 2.7310 - 2.3858 0.99 5092 157 0.1588 0.1942 REMARK 3 4 2.3858 - 2.1676 0.98 5021 155 0.1625 0.2202 REMARK 3 5 2.1676 - 2.0123 0.99 5105 158 0.1629 0.2001 REMARK 3 6 2.0123 - 1.8936 0.99 5025 156 0.1896 0.2367 REMARK 3 7 1.8936 - 1.7988 0.99 5093 157 0.2051 0.2289 REMARK 3 8 1.7988 - 1.7205 0.89 4499 140 0.2205 0.2569 REMARK 3 9 1.7205 - 1.6542 0.45 2319 71 0.2699 0.3189 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2924 REMARK 3 ANGLE : 1.056 3965 REMARK 3 CHIRALITY : 0.072 424 REMARK 3 PLANARITY : 0.005 549 REMARK 3 DIHEDRAL : 12.765 1087 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 103.3728 0.4937 16.6387 REMARK 3 T TENSOR REMARK 3 T11: 0.1447 T22: 0.0680 REMARK 3 T33: 0.1411 T12: 0.0073 REMARK 3 T13: 0.0054 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 3.8982 L22: 0.6427 REMARK 3 L33: 2.3013 L12: -0.8268 REMARK 3 L13: 0.9302 L23: -0.3517 REMARK 3 S TENSOR REMARK 3 S11: -0.0262 S12: -0.0505 S13: -0.1169 REMARK 3 S21: 0.1194 S22: 0.0349 S23: -0.0237 REMARK 3 S31: -0.0118 S32: 0.0541 S33: 0.0010 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 89.5257 11.0379 19.9174 REMARK 3 T TENSOR REMARK 3 T11: 0.1874 T22: 0.1655 REMARK 3 T33: 0.1662 T12: 0.0215 REMARK 3 T13: -0.0068 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 2.3590 L22: 3.1432 REMARK 3 L33: 2.9272 L12: -1.7456 REMARK 3 L13: -1.6290 L23: 1.4903 REMARK 3 S TENSOR REMARK 3 S11: 0.0686 S12: -0.0862 S13: 0.4215 REMARK 3 S21: 0.1360 S22: 0.0952 S23: -0.2603 REMARK 3 S31: -0.2678 S32: -0.1531 S33: -0.1723 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 107.1779 14.7581 26.8812 REMARK 3 T TENSOR REMARK 3 T11: 0.2233 T22: 0.1541 REMARK 3 T33: 0.1852 T12: 0.0072 REMARK 3 T13: -0.0241 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 1.8573 L22: 0.9569 REMARK 3 L33: 1.5288 L12: 0.1167 REMARK 3 L13: -0.1258 L23: 0.4106 REMARK 3 S TENSOR REMARK 3 S11: 0.0145 S12: -0.2153 S13: 0.2610 REMARK 3 S21: 0.0950 S22: 0.0401 S23: -0.1232 REMARK 3 S31: -0.2788 S32: 0.1222 S33: -0.0459 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 275 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): 107.4104 7.6974 -0.7992 REMARK 3 T TENSOR REMARK 3 T11: 0.1540 T22: 0.1536 REMARK 3 T33: 0.1690 T12: -0.0220 REMARK 3 T13: 0.0165 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 1.3646 L22: 0.6602 REMARK 3 L33: 3.1374 L12: -0.7394 REMARK 3 L13: 1.9551 L23: -1.3259 REMARK 3 S TENSOR REMARK 3 S11: -0.0423 S12: 0.1186 S13: 0.0398 REMARK 3 S21: -0.0041 S22: -0.0184 S23: -0.0907 REMARK 3 S31: -0.1031 S32: 0.1585 S33: 0.0671 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PUL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000085237. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.23953 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43729 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 80.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.02900 REMARK 200 FOR THE DATA SET : 22.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.27500 REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1PUD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, 10% DMSO, 13% PEG 8000, PH REMARK 280 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.83500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.09000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.83500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.09000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 179.34000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 616 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 GLN A 7 REMARK 465 GLU A 8 REMARK 465 THR A 9 REMARK 465 ASP A 10 REMARK 465 HIS A 127 REMARK 465 LEU A 128 REMARK 465 ASP A 129 REMARK 465 GLY A 130 REMARK 465 SER A 131 REMARK 465 ARG A 132 REMARK 465 ARG A 384 REMARK 465 ASN A 385 REMARK 465 SER A 386 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 11 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 73 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 77 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 107 CG CD OE1 NE2 REMARK 470 SER A 113 OG REMARK 470 LEU A 114 CG CD1 CD2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 HIS A 133 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 167 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 GLU A 194 CG CD OE1 OE2 REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 LYS A 264 CG CD CE NZ REMARK 470 ARG A 286 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 306 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 14 112.16 -164.13 REMARK 500 GLN A 203 -164.78 -123.71 REMARK 500 SER A 205 -130.85 58.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 318 SG REMARK 620 2 CYS A 320 SG 106.1 REMARK 620 3 CYS A 323 SG 114.2 116.3 REMARK 620 4 HIS A 349 ND1 105.7 116.0 98.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2WU A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P0D RELATED DB: PDB REMARK 900 TGT WILD TYPE REMARK 900 RELATED ID: 4PUJ RELATED DB: PDB REMARK 900 RELATED ID: 4PUK RELATED DB: PDB REMARK 900 RELATED ID: 4PUM RELATED DB: PDB REMARK 900 RELATED ID: 4PUN RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS HAVE INDICATED THAT SWISSPROT FOR P28720 HAS A REMARK 999 MISSANNOTATION. THE CORRECT RESIDUE AT THE POSITION IS LYS. CFR. REMARK 999 PAPER REUTER K.K.H., FICNER R.; J. BACTERIOL. 177:5284-5288(1995). DBREF 4PUL A 1 386 UNP P28720 TGT_ZYMMO 1 386 SEQADV 4PUL ASN A 102 UNP P28720 ASP 102 ENGINEERED MUTATION SEQADV 4PUL LYS A 312 UNP P28720 THR 312 SEE REMARK 999 SEQRES 1 A 386 MET VAL GLU ALA THR ALA GLN GLU THR ASP ARG PRO ARG SEQRES 2 A 386 PHE SER PHE SER ILE ALA ALA ARG GLU GLY LYS ALA ARG SEQRES 3 A 386 THR GLY THR ILE GLU MET LYS ARG GLY VAL ILE ARG THR SEQRES 4 A 386 PRO ALA PHE MET PRO VAL GLY THR ALA ALA THR VAL LYS SEQRES 5 A 386 ALA LEU LYS PRO GLU THR VAL ARG ALA THR GLY ALA ASP SEQRES 6 A 386 ILE ILE LEU GLY ASN THR TYR HIS LEU MET LEU ARG PRO SEQRES 7 A 386 GLY ALA GLU ARG ILE ALA LYS LEU GLY GLY LEU HIS SER SEQRES 8 A 386 PHE MET GLY TRP ASP ARG PRO ILE LEU THR ASN SER GLY SEQRES 9 A 386 GLY TYR GLN VAL MET SER LEU SER SER LEU THR LYS GLN SEQRES 10 A 386 SER GLU GLU GLY VAL THR PHE LYS SER HIS LEU ASP GLY SEQRES 11 A 386 SER ARG HIS MET LEU SER PRO GLU ARG SER ILE GLU ILE SEQRES 12 A 386 GLN HIS LEU LEU GLY SER ASP ILE VAL MET ALA PHE ASP SEQRES 13 A 386 GLU CYS THR PRO TYR PRO ALA THR PRO SER ARG ALA ALA SEQRES 14 A 386 SER SER MET GLU ARG SER MET ARG TRP ALA LYS ARG SER SEQRES 15 A 386 ARG ASP ALA PHE ASP SER ARG LYS GLU GLN ALA GLU ASN SEQRES 16 A 386 ALA ALA LEU PHE GLY ILE GLN GLN GLY SER VAL PHE GLU SEQRES 17 A 386 ASN LEU ARG GLN GLN SER ALA ASP ALA LEU ALA GLU ILE SEQRES 18 A 386 GLY PHE ASP GLY TYR ALA VAL GLY GLY LEU ALA VAL GLY SEQRES 19 A 386 GLU GLY GLN ASP GLU MET PHE ARG VAL LEU ASP PHE SER SEQRES 20 A 386 VAL PRO MET LEU PRO ASP ASP LYS PRO HIS TYR LEU MET SEQRES 21 A 386 GLY VAL GLY LYS PRO ASP ASP ILE VAL GLY ALA VAL GLU SEQRES 22 A 386 ARG GLY ILE ASP MET PHE ASP CYS VAL LEU PRO THR ARG SEQRES 23 A 386 SER GLY ARG ASN GLY GLN ALA PHE THR TRP ASP GLY PRO SEQRES 24 A 386 ILE ASN ILE ARG ASN ALA ARG PHE SER GLU ASP LEU LYS SEQRES 25 A 386 PRO LEU ASP SER GLU CYS HIS CYS ALA VAL CYS GLN LYS SEQRES 26 A 386 TRP SER ARG ALA TYR ILE HIS HIS LEU ILE ARG ALA GLY SEQRES 27 A 386 GLU ILE LEU GLY ALA MET LEU MET THR GLU HIS ASN ILE SEQRES 28 A 386 ALA PHE TYR GLN GLN LEU MET GLN LYS ILE ARG ASP SER SEQRES 29 A 386 ILE SER GLU GLY ARG PHE SER GLN PHE ALA GLN ASP PHE SEQRES 30 A 386 ARG ALA ARG TYR PHE ALA ARG ASN SER HET ZN A 401 1 HET GOL A 402 6 HET 2WU A 403 17 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM 2WU 6-AMINO-2-(METHYLAMINO)-3,7-DIHYDRO-8H-IMIDAZO[4,5- HETNAM 2 2WU G]QUINAZOLIN-8-ONE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 GOL C3 H8 O3 FORMUL 4 2WU C10 H10 N6 O FORMUL 5 HOH *261(H2 O) HELIX 1 1 LYS A 55 GLY A 63 1 9 HELIX 2 2 ASN A 70 ARG A 77 1 8 HELIX 3 3 GLY A 79 LEU A 86 1 8 HELIX 4 4 GLY A 88 GLY A 94 1 7 HELIX 5 5 GLY A 104 SER A 112 1 9 HELIX 6 6 SER A 136 GLY A 148 1 13 HELIX 7 7 THR A 164 ARG A 189 1 26 HELIX 8 8 ARG A 189 ALA A 196 1 8 HELIX 9 9 PHE A 207 GLY A 222 1 16 HELIX 10 10 GLY A 236 VAL A 248 1 13 HELIX 11 11 PRO A 249 LEU A 251 5 3 HELIX 12 12 LYS A 264 ARG A 274 1 11 HELIX 13 13 VAL A 282 ASN A 290 1 9 HELIX 14 14 ASN A 304 SER A 308 5 5 HELIX 15 15 CYS A 320 TRP A 326 1 7 HELIX 16 16 SER A 327 ALA A 337 1 11 HELIX 17 17 GLU A 339 GLU A 367 1 29 HELIX 18 18 ARG A 369 PHE A 382 1 14 SHEET 1 A 3 PHE A 14 GLU A 22 0 SHEET 2 A 3 ALA A 25 MET A 32 -1 O GLU A 31 N SER A 15 SHEET 3 A 3 GLY A 35 THR A 39 -1 O ILE A 37 N ILE A 30 SHEET 1 B 9 ALA A 41 MET A 43 0 SHEET 2 B 9 MET A 278 ASP A 280 1 O PHE A 279 N MET A 43 SHEET 3 B 9 HIS A 257 LEU A 259 1 N LEU A 259 O MET A 278 SHEET 4 B 9 GLY A 225 VAL A 228 1 N VAL A 228 O TYR A 258 SHEET 5 B 9 ALA A 197 GLN A 202 1 N GLY A 200 O ALA A 227 SHEET 6 B 9 ILE A 151 MET A 153 1 N VAL A 152 O ALA A 197 SHEET 7 B 9 ILE A 99 THR A 101 1 N THR A 101 O ILE A 151 SHEET 8 B 9 ILE A 67 GLY A 69 1 N GLY A 69 O LEU A 100 SHEET 9 B 9 VAL A 45 GLY A 46 1 N GLY A 46 O LEU A 68 SHEET 1 C 3 LEU A 114 GLN A 117 0 SHEET 2 C 3 VAL A 122 LYS A 125 -1 O THR A 123 N LYS A 116 SHEET 3 C 3 MET A 134 LEU A 135 -1 O LEU A 135 N VAL A 122 SHEET 1 D 2 GLN A 292 ALA A 293 0 SHEET 2 D 2 ILE A 300 ASN A 301 -1 O ILE A 300 N ALA A 293 LINK SG CYS A 318 ZN ZN A 401 1555 1555 2.35 LINK SG CYS A 320 ZN ZN A 401 1555 1555 2.34 LINK SG CYS A 323 ZN ZN A 401 1555 1555 2.31 LINK ND1 HIS A 349 ZN ZN A 401 1555 1555 2.09 CISPEP 1 THR A 39 PRO A 40 0 0.99 CISPEP 2 ARG A 77 PRO A 78 0 3.39 CISPEP 3 TYR A 161 PRO A 162 0 -3.16 CISPEP 4 VAL A 262 GLY A 263 0 0.84 SITE 1 AC1 4 CYS A 318 CYS A 320 CYS A 323 HIS A 349 SITE 1 AC2 7 PRO A 56 GLU A 57 GLY A 94 TRP A 95 SITE 2 AC2 7 ASP A 96 ARG A 97 LYS A 325 SITE 1 AC3 12 TYR A 106 ASP A 156 CYS A 158 GLN A 203 SITE 2 AC3 12 GLY A 229 GLY A 230 LEU A 231 ALA A 232 SITE 3 AC3 12 MET A 260 GLY A 261 HOH A 595 HOH A 596 CRYST1 89.670 64.180 70.360 90.00 92.86 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011152 0.000000 0.000557 0.00000 SCALE2 0.000000 0.015581 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014230 0.00000