HEADER IMMUNE SYSTEM 15-MAR-14 4PV8 TITLE CRYSTAL STRUCTURE OF H2KB-Q600F COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, K-B ALPHA CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: H-2K(B); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B, D; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: S598 PEPTIDE MODIFIED Q600F; COMPND 12 CHAIN: E, F; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: H2-K1, H2-K; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 GENE: B2M; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET; SOURCE 21 MOL_ID: 3; SOURCE 22 SYNTHETIC: YES; SOURCE 23 OTHER_DETAILS: GL BIOCHEM KEYWDS TCR, T CELL, H2KB, HETEROCLITIC EPITOPES, CD8 T CELL, CORONAVIRUS, KEYWDS 2 IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR K.-A.TWIST,J.ROSSJOHN,S.GRAS REVDAT 5 06-DEC-23 4PV8 1 REMARK REVDAT 4 20-SEP-23 4PV8 1 REMARK SEQADV LINK REVDAT 3 22-NOV-17 4PV8 1 REMARK REVDAT 2 18-JUN-14 4PV8 1 JRNL REVDAT 1 23-APR-14 4PV8 0 JRNL AUTH J.A.TRUJILLO,S.GRAS,K.A.TWIST,N.P.CROFT,R.CHANNAPPANAVAR, JRNL AUTH 2 J.ROSSJOHN,A.W.PURCELL,S.PERLMAN JRNL TITL STRUCTURAL AND FUNCTIONAL CORRELATES OF ENHANCED ANTIVIRAL JRNL TITL 2 IMMUNITY GENERATED BY HETEROCLITIC CD8 T CELL EPITOPES. JRNL REF J.IMMUNOL. V. 192 5245 2014 JRNL REFN ISSN 0022-1767 JRNL PMID 24795457 JRNL DOI 10.4049/JIMMUNOL.1400111 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 42469 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2138 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.37 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.46 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2849 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2222 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2690 REMARK 3 BIN R VALUE (WORKING SET) : 0.2193 REMARK 3 BIN FREE R VALUE : 0.2728 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.58 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 159 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6303 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 402 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.94330 REMARK 3 B22 (A**2) : -5.10860 REMARK 3 B33 (A**2) : 2.16530 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.29240 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.275 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.267 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6654 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 9069 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2311 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 173 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 976 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6654 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 830 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7538 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.13 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.33 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.90 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 15.6319 0.9487 26.2350 REMARK 3 T TENSOR REMARK 3 T11: -0.0707 T22: -0.0026 REMARK 3 T33: -0.1470 T12: 0.0053 REMARK 3 T13: -0.0615 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 1.2954 L22: 0.6124 REMARK 3 L33: 0.6546 L12: -0.0950 REMARK 3 L13: -0.3771 L23: -0.2244 REMARK 3 S TENSOR REMARK 3 S11: -0.0181 S12: -0.0238 S13: 0.0277 REMARK 3 S21: 0.0240 S22: 0.0605 S23: 0.0552 REMARK 3 S31: -0.0281 S32: 0.0712 S33: -0.0424 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 19.9994 -0.5903 7.4084 REMARK 3 T TENSOR REMARK 3 T11: -0.0993 T22: 0.1075 REMARK 3 T33: -0.1400 T12: -0.0224 REMARK 3 T13: -0.0622 T23: 0.0406 REMARK 3 L TENSOR REMARK 3 L11: 3.5741 L22: 2.3470 REMARK 3 L33: 3.3734 L12: -1.5221 REMARK 3 L13: -2.0363 L23: 1.6441 REMARK 3 S TENSOR REMARK 3 S11: 0.0333 S12: 0.2234 S13: 0.0415 REMARK 3 S21: -0.1781 S22: -0.0360 S23: -0.0081 REMARK 3 S31: 0.0504 S32: -0.0763 S33: 0.0027 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 32.2874 1.8543 57.0016 REMARK 3 T TENSOR REMARK 3 T11: -0.0694 T22: -0.0243 REMARK 3 T33: -0.1466 T12: 0.0091 REMARK 3 T13: -0.0466 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.5041 L22: 0.6958 REMARK 3 L33: 0.8548 L12: 0.4066 REMARK 3 L13: 0.1052 L23: 0.0122 REMARK 3 S TENSOR REMARK 3 S11: -0.1149 S12: 0.0857 S13: -0.0375 REMARK 3 S21: -0.0882 S22: 0.0694 S23: -0.0847 REMARK 3 S31: -0.0244 S32: -0.0238 S33: 0.0455 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): 27.9818 -0.5326 76.0815 REMARK 3 T TENSOR REMARK 3 T11: -0.1132 T22: 0.0906 REMARK 3 T33: -0.1350 T12: 0.0467 REMARK 3 T13: -0.0634 T23: -0.0275 REMARK 3 L TENSOR REMARK 3 L11: 3.2667 L22: 2.1922 REMARK 3 L33: 3.2742 L12: 1.0286 REMARK 3 L13: -1.8402 L23: -1.1401 REMARK 3 S TENSOR REMARK 3 S11: -0.0505 S12: -0.3337 S13: 0.0224 REMARK 3 S21: 0.1668 S22: -0.0211 S23: -0.0462 REMARK 3 S31: 0.0129 S32: 0.0620 S33: 0.0716 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PV8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000085260. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.956 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42500 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2ZSV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16-24% PEG 3350 AND 0.2M NA ACETATE, REMARK 280 0.1M NA-CACODYLATE, PH 6.7, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.49500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 50 CB CG CD NE CZ NH1 NH2 REMARK 480 ARG C 62 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 114 86.69 -156.46 REMARK 500 GLU A 196 -131.85 76.79 REMARK 500 ASP A 197 31.57 -96.39 REMARK 500 ASP A 227 -6.38 61.31 REMARK 500 PRO A 277 156.01 -49.91 REMARK 500 TRP B 60 -11.81 83.10 REMARK 500 LYS C 131 -32.65 -130.84 REMARK 500 GLU C 196 -132.23 63.32 REMARK 500 ASN C 220 -107.37 55.71 REMARK 500 ASP C 227 -3.99 72.04 REMARK 500 TRP D 60 -12.16 77.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN E OF S598 PEPTIDE REMARK 800 MODIFIED Q600F REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN F OF S598 PEPTIDE REMARK 800 MODIFIED Q600F REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZSV RELATED DB: PDB REMARK 900 RELATED ID: 4PV9 RELATED DB: PDB DBREF 4PV8 A 1 278 UNP P01901 HA1B_MOUSE 22 299 DBREF 4PV8 B 1 99 UNP P01887 B2MG_MOUSE 21 119 DBREF 4PV8 C 1 278 UNP P01901 HA1B_MOUSE 22 299 DBREF 4PV8 D 1 99 UNP P01887 B2MG_MOUSE 21 119 DBREF 4PV8 E 1 8 PDB 4PV8 4PV8 1 8 DBREF 4PV8 F 1 8 PDB 4PV8 4PV8 1 8 SEQADV 4PV8 ASP B 85 UNP P01887 ALA 105 CONFLICT SEQADV 4PV8 ASP D 85 UNP P01887 ALA 105 CONFLICT SEQRES 1 A 278 GLY PRO HIS SER LEU ARG TYR PHE VAL THR ALA VAL SER SEQRES 2 A 278 ARG PRO GLY LEU GLY GLU PRO ARG TYR MET GLU VAL GLY SEQRES 3 A 278 TYR VAL ASP ASP THR GLU PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 278 ALA GLU ASN PRO ARG TYR GLU PRO ARG ALA ARG TRP MET SEQRES 5 A 278 GLU GLN GLU GLY PRO GLU TYR TRP GLU ARG GLU THR GLN SEQRES 6 A 278 LYS ALA LYS GLY ASN GLU GLN SER PHE ARG VAL ASP LEU SEQRES 7 A 278 ARG THR LEU LEU GLY TYR TYR ASN GLN SER LYS GLY GLY SEQRES 8 A 278 SER HIS THR ILE GLN VAL ILE SER GLY CYS GLU VAL GLY SEQRES 9 A 278 SER ASP GLY ARG LEU LEU ARG GLY TYR GLN GLN TYR ALA SEQRES 10 A 278 TYR ASP GLY CYS ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 A 278 LYS THR TRP THR ALA ALA ASP MET ALA ALA LEU ILE THR SEQRES 12 A 278 LYS HIS LYS TRP GLU GLN ALA GLY GLU ALA GLU ARG LEU SEQRES 13 A 278 ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU ARG SEQRES 14 A 278 ARG TYR LEU LYS ASN GLY ASN ALA THR LEU LEU ARG THR SEQRES 15 A 278 ASP SER PRO LYS ALA HIS VAL THR HIS HIS SER ARG PRO SEQRES 16 A 278 GLU ASP LYS VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 A 278 TYR PRO ALA ASP ILE THR LEU THR TRP GLN LEU ASN GLY SEQRES 18 A 278 GLU GLU LEU ILE GLN ASP MET GLU LEU VAL GLU THR ARG SEQRES 19 A 278 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA SER VAL SEQRES 20 A 278 VAL VAL PRO LEU GLY LYS GLU GLN TYR TYR THR CYS HIS SEQRES 21 A 278 VAL TYR HIS GLN GLY LEU PRO GLU PRO LEU THR LEU ARG SEQRES 22 A 278 TRP GLU PRO PRO PRO SEQRES 1 B 99 ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG HIS SEQRES 2 B 99 PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS TYR SEQRES 3 B 99 VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN MET SEQRES 4 B 99 LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SER SEQRES 5 B 99 ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE LEU SEQRES 6 B 99 ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR TYR SEQRES 7 B 99 ALA CYS ARG VAL LYS HIS ASP SER MET ALA GLU PRO LYS SEQRES 8 B 99 THR VAL TYR TRP ASP ARG ASP MET SEQRES 1 C 278 GLY PRO HIS SER LEU ARG TYR PHE VAL THR ALA VAL SER SEQRES 2 C 278 ARG PRO GLY LEU GLY GLU PRO ARG TYR MET GLU VAL GLY SEQRES 3 C 278 TYR VAL ASP ASP THR GLU PHE VAL ARG PHE ASP SER ASP SEQRES 4 C 278 ALA GLU ASN PRO ARG TYR GLU PRO ARG ALA ARG TRP MET SEQRES 5 C 278 GLU GLN GLU GLY PRO GLU TYR TRP GLU ARG GLU THR GLN SEQRES 6 C 278 LYS ALA LYS GLY ASN GLU GLN SER PHE ARG VAL ASP LEU SEQRES 7 C 278 ARG THR LEU LEU GLY TYR TYR ASN GLN SER LYS GLY GLY SEQRES 8 C 278 SER HIS THR ILE GLN VAL ILE SER GLY CYS GLU VAL GLY SEQRES 9 C 278 SER ASP GLY ARG LEU LEU ARG GLY TYR GLN GLN TYR ALA SEQRES 10 C 278 TYR ASP GLY CYS ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 C 278 LYS THR TRP THR ALA ALA ASP MET ALA ALA LEU ILE THR SEQRES 12 C 278 LYS HIS LYS TRP GLU GLN ALA GLY GLU ALA GLU ARG LEU SEQRES 13 C 278 ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU ARG SEQRES 14 C 278 ARG TYR LEU LYS ASN GLY ASN ALA THR LEU LEU ARG THR SEQRES 15 C 278 ASP SER PRO LYS ALA HIS VAL THR HIS HIS SER ARG PRO SEQRES 16 C 278 GLU ASP LYS VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 C 278 TYR PRO ALA ASP ILE THR LEU THR TRP GLN LEU ASN GLY SEQRES 18 C 278 GLU GLU LEU ILE GLN ASP MET GLU LEU VAL GLU THR ARG SEQRES 19 C 278 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA SER VAL SEQRES 20 C 278 VAL VAL PRO LEU GLY LYS GLU GLN TYR TYR THR CYS HIS SEQRES 21 C 278 VAL TYR HIS GLN GLY LEU PRO GLU PRO LEU THR LEU ARG SEQRES 22 C 278 TRP GLU PRO PRO PRO SEQRES 1 D 99 ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG HIS SEQRES 2 D 99 PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS TYR SEQRES 3 D 99 VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN MET SEQRES 4 D 99 LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SER SEQRES 5 D 99 ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE LEU SEQRES 6 D 99 ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR TYR SEQRES 7 D 99 ALA CYS ARG VAL LYS HIS ASP SER MET ALA GLU PRO LYS SEQRES 8 D 99 THR VAL TYR TRP ASP ARG ASP MET SEQRES 1 E 8 ARG ABA PHE ILE PHE ALA ASN ILE SEQRES 1 F 8 ARG ABA PHE ILE PHE ALA ASN ILE MODRES 4PV8 ABA E 2 ALA ALPHA-AMINOBUTYRIC ACID MODRES 4PV8 ABA F 2 ALA ALPHA-AMINOBUTYRIC ACID HET ABA E 2 6 HET ABA F 2 6 HET PG4 C 301 13 HET ACT D 101 4 HETNAM ABA ALPHA-AMINOBUTYRIC ACID HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM ACT ACETATE ION FORMUL 5 ABA 2(C4 H9 N O2) FORMUL 7 PG4 C8 H18 O5 FORMUL 8 ACT C2 H3 O2 1- FORMUL 9 HOH *402(H2 O) HELIX 1 1 ALA A 49 GLU A 53 5 5 HELIX 2 2 GLY A 56 TYR A 85 1 30 HELIX 3 3 ASP A 137 GLY A 151 1 15 HELIX 4 4 GLY A 151 GLY A 162 1 12 HELIX 5 5 GLY A 162 LEU A 180 1 19 HELIX 6 6 LYS A 253 GLN A 255 5 3 HELIX 7 7 ALA C 49 GLU C 55 5 7 HELIX 8 8 GLY C 56 TYR C 85 1 30 HELIX 9 9 ASP C 137 GLY C 151 1 15 HELIX 10 10 GLY C 151 GLY C 162 1 12 HELIX 11 11 GLY C 162 LEU C 180 1 19 HELIX 12 12 LYS C 253 GLN C 255 5 3 SHEET 1 A 8 GLU A 46 PRO A 47 0 SHEET 2 A 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 A 8 ARG A 21 VAL A 28 -1 N GLU A 24 O PHE A 36 SHEET 4 A 8 HIS A 3 VAL A 12 -1 N ARG A 6 O TYR A 27 SHEET 5 A 8 THR A 94 VAL A 103 -1 O VAL A 103 N HIS A 3 SHEET 6 A 8 LEU A 109 TYR A 118 -1 O LEU A 110 N GLU A 102 SHEET 7 A 8 CYS A 121 LEU A 126 -1 O ILE A 124 N TYR A 116 SHEET 8 A 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 B 4 LYS A 186 SER A 193 0 SHEET 2 B 4 LYS A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 B 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 B 4 GLU A 229 LEU A 230 -1 N GLU A 229 O SER A 246 SHEET 1 C 4 LYS A 186 SER A 193 0 SHEET 2 C 4 LYS A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 C 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 C 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 D 4 GLU A 222 GLU A 223 0 SHEET 2 D 4 THR A 214 LEU A 219 -1 N LEU A 219 O GLU A 222 SHEET 3 D 4 TYR A 257 TYR A 262 -1 O THR A 258 N GLN A 218 SHEET 4 D 4 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 E 4 GLN B 6 SER B 11 0 SHEET 2 E 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 E 4 PHE B 62 PHE B 70 -1 O THR B 68 N LEU B 23 SHEET 4 E 4 GLU B 50 MET B 51 -1 N GLU B 50 O HIS B 67 SHEET 1 F 4 GLN B 6 SER B 11 0 SHEET 2 F 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 F 4 PHE B 62 PHE B 70 -1 O THR B 68 N LEU B 23 SHEET 4 F 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 G 4 LYS B 44 LYS B 45 0 SHEET 2 G 4 GLU B 36 LYS B 41 -1 N LYS B 41 O LYS B 44 SHEET 3 G 4 TYR B 78 LYS B 83 -1 O ARG B 81 N GLN B 38 SHEET 4 G 4 LYS B 91 TYR B 94 -1 O LYS B 91 N VAL B 82 SHEET 1 H 8 GLU C 46 PRO C 47 0 SHEET 2 H 8 THR C 31 ASP C 37 -1 N ARG C 35 O GLU C 46 SHEET 3 H 8 ARG C 21 VAL C 28 -1 N GLU C 24 O PHE C 36 SHEET 4 H 8 HIS C 3 VAL C 12 -1 N PHE C 8 O VAL C 25 SHEET 5 H 8 THR C 94 VAL C 103 -1 O SER C 99 N TYR C 7 SHEET 6 H 8 LEU C 109 TYR C 118 -1 O LEU C 110 N GLU C 102 SHEET 7 H 8 CYS C 121 LEU C 126 -1 O ILE C 124 N TYR C 116 SHEET 8 H 8 TRP C 133 ALA C 135 -1 O THR C 134 N ALA C 125 SHEET 1 I 4 LYS C 186 SER C 193 0 SHEET 2 I 4 LYS C 198 PHE C 208 -1 O ARG C 202 N THR C 190 SHEET 3 I 4 PHE C 241 PRO C 250 -1 O ALA C 245 N CYS C 203 SHEET 4 I 4 GLU C 229 LEU C 230 -1 N GLU C 229 O SER C 246 SHEET 1 J 4 LYS C 186 SER C 193 0 SHEET 2 J 4 LYS C 198 PHE C 208 -1 O ARG C 202 N THR C 190 SHEET 3 J 4 PHE C 241 PRO C 250 -1 O ALA C 245 N CYS C 203 SHEET 4 J 4 ARG C 234 PRO C 235 -1 N ARG C 234 O GLN C 242 SHEET 1 K 4 GLU C 222 GLU C 223 0 SHEET 2 K 4 THR C 214 LEU C 219 -1 N LEU C 219 O GLU C 222 SHEET 3 K 4 TYR C 257 TYR C 262 -1 O HIS C 260 N THR C 216 SHEET 4 K 4 LEU C 270 LEU C 272 -1 O LEU C 272 N CYS C 259 SHEET 1 L 4 GLN D 6 SER D 11 0 SHEET 2 L 4 ASN D 21 PHE D 30 -1 O ASN D 24 N TYR D 10 SHEET 3 L 4 PHE D 62 PHE D 70 -1 O ALA D 66 N CYS D 25 SHEET 4 L 4 GLU D 50 MET D 51 -1 N GLU D 50 O HIS D 67 SHEET 1 M 4 GLN D 6 SER D 11 0 SHEET 2 M 4 ASN D 21 PHE D 30 -1 O ASN D 24 N TYR D 10 SHEET 3 M 4 PHE D 62 PHE D 70 -1 O ALA D 66 N CYS D 25 SHEET 4 M 4 SER D 55 PHE D 56 -1 N SER D 55 O TYR D 63 SHEET 1 N 4 LYS D 44 LYS D 45 0 SHEET 2 N 4 GLU D 36 LYS D 41 -1 N LYS D 41 O LYS D 44 SHEET 3 N 4 TYR D 78 LYS D 83 -1 O ARG D 81 N GLN D 38 SHEET 4 N 4 LYS D 91 TYR D 94 -1 O LYS D 91 N VAL D 82 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.08 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.04 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.04 SSBOND 4 CYS C 101 CYS C 164 1555 1555 2.07 SSBOND 5 CYS C 203 CYS C 259 1555 1555 2.03 SSBOND 6 CYS D 25 CYS D 80 1555 1555 2.04 LINK C ARG E 1 N ABA E 2 1555 1555 1.33 LINK C ABA E 2 N PHE E 3 1555 1555 1.33 LINK C ARG F 1 N ABA F 2 1555 1555 1.33 LINK C ABA F 2 N PHE F 3 1555 1555 1.33 CISPEP 1 TYR A 209 PRO A 210 0 -0.08 CISPEP 2 HIS B 31 PRO B 32 0 4.35 CISPEP 3 TYR C 209 PRO C 210 0 -0.15 CISPEP 4 HIS D 31 PRO D 32 0 5.97 SITE 1 AC1 2 SER C 73 ASN F 7 SITE 1 AC2 1 HIS D 34 SITE 1 AC3 29 TYR A 7 GLU A 24 GLU A 63 LYS A 66 SITE 2 AC3 29 ASN A 70 SER A 73 PHE A 74 ASP A 77 SITE 3 AC3 29 LEU A 81 TYR A 84 GLN A 114 TYR A 116 SITE 4 AC3 29 THR A 143 LYS A 146 TRP A 147 GLU A 152 SITE 5 AC3 29 ARG A 155 TYR A 159 TRP A 167 TYR A 171 SITE 6 AC3 29 HOH A 302 HOH A 372 HOH A 374 HOH A 397 SITE 7 AC3 29 HOH A 435 HOH E 102 HOH E 105 HOH E 106 SITE 8 AC3 29 HOH E 107 SITE 1 AC4 29 TYR C 7 GLU C 24 ARG C 62 GLU C 63 SITE 2 AC4 29 LYS C 66 ASN C 70 SER C 73 PHE C 74 SITE 3 AC4 29 VAL C 76 ASP C 77 LEU C 81 TYR C 84 SITE 4 AC4 29 GLN C 114 TYR C 116 THR C 143 LYS C 146 SITE 5 AC4 29 TRP C 147 GLU C 152 ARG C 155 TYR C 159 SITE 6 AC4 29 TRP C 167 TYR C 171 PG4 C 301 HOH C 401 SITE 7 AC4 29 HOH C 419 HOH C 486 HOH C 513 HOH F 101 SITE 8 AC4 29 HOH F 103 CRYST1 66.460 90.990 89.610 90.00 111.65 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015047 0.000000 0.005973 0.00000 SCALE2 0.000000 0.010990 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012006 0.00000