HEADER IMMUNE SYSTEM 15-MAR-14 4PV9 TITLE CRYSTAL STRUCTURE OF H2KB-Q600V COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, K-B ALPHA CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: H-2K(B); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B, D; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: S598 PEPTIDE MODIFIED Q600V; COMPND 12 CHAIN: E, F; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: H2-K1, H2-K; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 GENE: B2M; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET; SOURCE 21 MOL_ID: 3; SOURCE 22 SYNTHETIC: YES KEYWDS TCR, T CELL, H2KB, HETEROCLITIC EPITOPES, CD8 T CELL, CORONAVIRUS, KEYWDS 2 IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR K.-A.TWIST,J.ROSSJOHN,S.GRAS REVDAT 5 06-DEC-23 4PV9 1 REMARK REVDAT 4 20-SEP-23 4PV9 1 REMARK SEQADV LINK REVDAT 3 22-NOV-17 4PV9 1 REMARK REVDAT 2 18-JUN-14 4PV9 1 JRNL REVDAT 1 23-APR-14 4PV9 0 JRNL AUTH J.A.TRUJILLO,S.GRAS,K.A.TWIST,N.P.CROFT,R.CHANNAPPANAVAR, JRNL AUTH 2 J.ROSSJOHN,A.W.PURCELL,S.PERLMAN JRNL TITL STRUCTURAL AND FUNCTIONAL CORRELATES OF ENHANCED ANTIVIRAL JRNL TITL 2 IMMUNITY GENERATED BY HETEROCLITIC CD8 T CELL EPITOPES. JRNL REF J.IMMUNOL. V. 192 5245 2014 JRNL REFN ISSN 0022-1767 JRNL PMID 24795457 JRNL DOI 10.4049/JIMMUNOL.1400111 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 65396 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3309 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.05 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.87 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4756 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2168 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4531 REMARK 3 BIN R VALUE (WORKING SET) : 0.2156 REMARK 3 BIN FREE R VALUE : 0.2414 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.73 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 225 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6287 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 788 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.70190 REMARK 3 B22 (A**2) : -6.65290 REMARK 3 B33 (A**2) : 2.95100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.56410 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.233 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.155 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6649 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 9062 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2322 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 171 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 981 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6649 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 829 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 8087 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.08 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.53 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 15.3453 1.3276 26.3682 REMARK 3 T TENSOR REMARK 3 T11: -0.0499 T22: 0.0250 REMARK 3 T33: -0.1156 T12: -0.0036 REMARK 3 T13: -0.0435 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.3490 L22: 0.3148 REMARK 3 L33: 0.5352 L12: -0.0302 REMARK 3 L13: -0.3853 L23: -0.1256 REMARK 3 S TENSOR REMARK 3 S11: 0.0041 S12: -0.0428 S13: 0.0531 REMARK 3 S21: 0.0116 S22: 0.0257 S23: 0.0379 REMARK 3 S31: -0.0187 S32: 0.0503 S33: -0.0298 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 20.1394 -0.5408 7.5073 REMARK 3 T TENSOR REMARK 3 T11: -0.0805 T22: 0.1364 REMARK 3 T33: -0.1286 T12: -0.0302 REMARK 3 T13: -0.0335 T23: 0.0251 REMARK 3 L TENSOR REMARK 3 L11: 2.7528 L22: 1.3535 REMARK 3 L33: 2.3934 L12: -0.8963 REMARK 3 L13: -1.4474 L23: 0.9043 REMARK 3 S TENSOR REMARK 3 S11: -0.0011 S12: 0.3704 S13: 0.0490 REMARK 3 S21: -0.0635 S22: -0.0710 S23: -0.0202 REMARK 3 S31: 0.0794 S32: -0.1671 S33: 0.0721 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 32.3849 2.1161 56.9737 REMARK 3 T TENSOR REMARK 3 T11: -0.0573 T22: 0.0004 REMARK 3 T33: -0.1407 T12: 0.0027 REMARK 3 T13: -0.0266 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 1.7040 L22: 0.4872 REMARK 3 L33: 0.8414 L12: 0.3522 REMARK 3 L13: -0.0319 L23: -0.0926 REMARK 3 S TENSOR REMARK 3 S11: -0.1362 S12: 0.1401 S13: -0.0416 REMARK 3 S21: -0.0625 S22: 0.0649 S23: -0.0727 REMARK 3 S31: 0.0048 S32: -0.0468 S33: 0.0713 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): 28.1047 -0.2745 76.0694 REMARK 3 T TENSOR REMARK 3 T11: -0.0774 T22: 0.1117 REMARK 3 T33: -0.1049 T12: 0.0292 REMARK 3 T13: -0.0281 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 2.3835 L22: 1.0111 REMARK 3 L33: 2.5881 L12: 0.9287 REMARK 3 L13: -1.1780 L23: -0.8796 REMARK 3 S TENSOR REMARK 3 S11: -0.0207 S12: -0.4097 S13: 0.0427 REMARK 3 S21: 0.0500 S22: -0.0597 S23: -0.0048 REMARK 3 S31: 0.0222 S32: 0.1061 S33: 0.0804 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PV9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000085261. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.956 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65401 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.280 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2ZSV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16-24% PEG 3350 AND 0.2M NA ACETATE, REMARK 280 0.1M NA-CACODYLATE, PH 6.7, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.37500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO C 278 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 30 -4.65 75.24 REMARK 500 GLN A 114 85.36 -152.38 REMARK 500 GLU A 196 -140.18 69.47 REMARK 500 ASP A 197 30.55 -94.83 REMARK 500 PRO A 277 157.83 -49.38 REMARK 500 TRP B 60 -13.41 81.50 REMARK 500 GLU C 196 -131.42 69.12 REMARK 500 LEU C 224 79.07 -102.59 REMARK 500 ASP C 227 -3.40 69.11 REMARK 500 TRP D 60 -12.57 74.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN E OF S598 PEPTIDE REMARK 800 MODIFIED Q600V REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN F OF S598 PEPTIDE REMARK 800 MODIFIED Q600V REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZSV RELATED DB: PDB REMARK 900 RELATED ID: 4PV8 RELATED DB: PDB DBREF 4PV9 A 1 278 UNP P01901 HA1B_MOUSE 22 299 DBREF 4PV9 B 1 99 UNP P01887 B2MG_MOUSE 21 119 DBREF 4PV9 C 1 278 UNP P01901 HA1B_MOUSE 22 299 DBREF 4PV9 D 1 99 UNP P01887 B2MG_MOUSE 21 119 DBREF 4PV9 E 1 8 PDB 4PV9 4PV9 1 8 DBREF 4PV9 F 1 8 PDB 4PV9 4PV9 1 8 SEQADV 4PV9 ASP B 85 UNP P01887 ALA 105 CONFLICT SEQADV 4PV9 ASP D 85 UNP P01887 ALA 105 CONFLICT SEQRES 1 A 278 GLY PRO HIS SER LEU ARG TYR PHE VAL THR ALA VAL SER SEQRES 2 A 278 ARG PRO GLY LEU GLY GLU PRO ARG TYR MET GLU VAL GLY SEQRES 3 A 278 TYR VAL ASP ASP THR GLU PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 278 ALA GLU ASN PRO ARG TYR GLU PRO ARG ALA ARG TRP MET SEQRES 5 A 278 GLU GLN GLU GLY PRO GLU TYR TRP GLU ARG GLU THR GLN SEQRES 6 A 278 LYS ALA LYS GLY ASN GLU GLN SER PHE ARG VAL ASP LEU SEQRES 7 A 278 ARG THR LEU LEU GLY TYR TYR ASN GLN SER LYS GLY GLY SEQRES 8 A 278 SER HIS THR ILE GLN VAL ILE SER GLY CYS GLU VAL GLY SEQRES 9 A 278 SER ASP GLY ARG LEU LEU ARG GLY TYR GLN GLN TYR ALA SEQRES 10 A 278 TYR ASP GLY CYS ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 A 278 LYS THR TRP THR ALA ALA ASP MET ALA ALA LEU ILE THR SEQRES 12 A 278 LYS HIS LYS TRP GLU GLN ALA GLY GLU ALA GLU ARG LEU SEQRES 13 A 278 ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU ARG SEQRES 14 A 278 ARG TYR LEU LYS ASN GLY ASN ALA THR LEU LEU ARG THR SEQRES 15 A 278 ASP SER PRO LYS ALA HIS VAL THR HIS HIS SER ARG PRO SEQRES 16 A 278 GLU ASP LYS VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 A 278 TYR PRO ALA ASP ILE THR LEU THR TRP GLN LEU ASN GLY SEQRES 18 A 278 GLU GLU LEU ILE GLN ASP MET GLU LEU VAL GLU THR ARG SEQRES 19 A 278 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA SER VAL SEQRES 20 A 278 VAL VAL PRO LEU GLY LYS GLU GLN TYR TYR THR CYS HIS SEQRES 21 A 278 VAL TYR HIS GLN GLY LEU PRO GLU PRO LEU THR LEU ARG SEQRES 22 A 278 TRP GLU PRO PRO PRO SEQRES 1 B 99 ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG HIS SEQRES 2 B 99 PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS TYR SEQRES 3 B 99 VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN MET SEQRES 4 B 99 LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SER SEQRES 5 B 99 ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE LEU SEQRES 6 B 99 ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR TYR SEQRES 7 B 99 ALA CYS ARG VAL LYS HIS ASP SER MET ALA GLU PRO LYS SEQRES 8 B 99 THR VAL TYR TRP ASP ARG ASP MET SEQRES 1 C 278 GLY PRO HIS SER LEU ARG TYR PHE VAL THR ALA VAL SER SEQRES 2 C 278 ARG PRO GLY LEU GLY GLU PRO ARG TYR MET GLU VAL GLY SEQRES 3 C 278 TYR VAL ASP ASP THR GLU PHE VAL ARG PHE ASP SER ASP SEQRES 4 C 278 ALA GLU ASN PRO ARG TYR GLU PRO ARG ALA ARG TRP MET SEQRES 5 C 278 GLU GLN GLU GLY PRO GLU TYR TRP GLU ARG GLU THR GLN SEQRES 6 C 278 LYS ALA LYS GLY ASN GLU GLN SER PHE ARG VAL ASP LEU SEQRES 7 C 278 ARG THR LEU LEU GLY TYR TYR ASN GLN SER LYS GLY GLY SEQRES 8 C 278 SER HIS THR ILE GLN VAL ILE SER GLY CYS GLU VAL GLY SEQRES 9 C 278 SER ASP GLY ARG LEU LEU ARG GLY TYR GLN GLN TYR ALA SEQRES 10 C 278 TYR ASP GLY CYS ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 C 278 LYS THR TRP THR ALA ALA ASP MET ALA ALA LEU ILE THR SEQRES 12 C 278 LYS HIS LYS TRP GLU GLN ALA GLY GLU ALA GLU ARG LEU SEQRES 13 C 278 ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU ARG SEQRES 14 C 278 ARG TYR LEU LYS ASN GLY ASN ALA THR LEU LEU ARG THR SEQRES 15 C 278 ASP SER PRO LYS ALA HIS VAL THR HIS HIS SER ARG PRO SEQRES 16 C 278 GLU ASP LYS VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 C 278 TYR PRO ALA ASP ILE THR LEU THR TRP GLN LEU ASN GLY SEQRES 18 C 278 GLU GLU LEU ILE GLN ASP MET GLU LEU VAL GLU THR ARG SEQRES 19 C 278 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA SER VAL SEQRES 20 C 278 VAL VAL PRO LEU GLY LYS GLU GLN TYR TYR THR CYS HIS SEQRES 21 C 278 VAL TYR HIS GLN GLY LEU PRO GLU PRO LEU THR LEU ARG SEQRES 22 C 278 TRP GLU PRO PRO PRO SEQRES 1 D 99 ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG HIS SEQRES 2 D 99 PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS TYR SEQRES 3 D 99 VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN MET SEQRES 4 D 99 LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SER SEQRES 5 D 99 ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE LEU SEQRES 6 D 99 ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR TYR SEQRES 7 D 99 ALA CYS ARG VAL LYS HIS ASP SER MET ALA GLU PRO LYS SEQRES 8 D 99 THR VAL TYR TRP ASP ARG ASP MET SEQRES 1 E 8 ARG ABA VAL ILE PHE ALA ASN ILE SEQRES 1 F 8 ARG ABA VAL ILE PHE ALA ASN ILE MODRES 4PV9 ABA E 2 ALA ALPHA-AMINOBUTYRIC ACID MODRES 4PV9 ABA F 2 ALA ALPHA-AMINOBUTYRIC ACID HET ABA E 2 6 HET ABA F 2 6 HET ACT C 301 4 HET GOL C 302 6 HET ACT D 101 4 HETNAM ABA ALPHA-AMINOBUTYRIC ACID HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 ABA 2(C4 H9 N O2) FORMUL 7 ACT 2(C2 H3 O2 1-) FORMUL 8 GOL C3 H8 O3 FORMUL 10 HOH *788(H2 O) HELIX 1 1 ALA A 49 GLU A 53 5 5 HELIX 2 2 GLY A 56 TYR A 85 1 30 HELIX 3 3 ASP A 137 ALA A 150 1 14 HELIX 4 4 GLY A 151 GLY A 162 1 12 HELIX 5 5 GLY A 162 LEU A 180 1 19 HELIX 6 6 LYS A 253 GLN A 255 5 3 HELIX 7 7 ALA C 49 GLU C 55 5 7 HELIX 8 8 GLY C 56 ASN C 86 1 31 HELIX 9 9 ASP C 137 GLY C 151 1 15 HELIX 10 10 GLY C 151 GLY C 162 1 12 HELIX 11 11 GLY C 162 LEU C 180 1 19 HELIX 12 12 LYS C 253 GLN C 255 5 3 SHEET 1 A 8 GLU A 46 PRO A 47 0 SHEET 2 A 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 A 8 ARG A 21 VAL A 28 -1 N GLU A 24 O PHE A 36 SHEET 4 A 8 HIS A 3 VAL A 12 -1 N THR A 10 O MET A 23 SHEET 5 A 8 THR A 94 VAL A 103 -1 O VAL A 103 N HIS A 3 SHEET 6 A 8 LEU A 109 TYR A 118 -1 O LEU A 110 N GLU A 102 SHEET 7 A 8 CYS A 121 LEU A 126 -1 O ILE A 124 N TYR A 116 SHEET 8 A 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 B 4 LYS A 186 SER A 193 0 SHEET 2 B 4 LYS A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 B 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 B 4 MET A 228 LEU A 230 -1 N GLU A 229 O SER A 246 SHEET 1 C 4 LYS A 186 SER A 193 0 SHEET 2 C 4 LYS A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 C 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 C 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 D 4 GLU A 222 GLU A 223 0 SHEET 2 D 4 THR A 214 LEU A 219 -1 N LEU A 219 O GLU A 222 SHEET 3 D 4 TYR A 257 TYR A 262 -1 O TYR A 262 N THR A 214 SHEET 4 D 4 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 E 4 GLN B 6 SER B 11 0 SHEET 2 E 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 E 4 PHE B 62 PHE B 70 -1 O ALA B 66 N CYS B 25 SHEET 4 E 4 GLU B 50 MET B 51 -1 N GLU B 50 O HIS B 67 SHEET 1 F 4 GLN B 6 SER B 11 0 SHEET 2 F 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 F 4 PHE B 62 PHE B 70 -1 O ALA B 66 N CYS B 25 SHEET 4 F 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 G 4 LYS B 44 LYS B 45 0 SHEET 2 G 4 GLU B 36 LYS B 41 -1 N LYS B 41 O LYS B 44 SHEET 3 G 4 TYR B 78 LYS B 83 -1 O ARG B 81 N GLN B 38 SHEET 4 G 4 LYS B 91 TYR B 94 -1 O LYS B 91 N VAL B 82 SHEET 1 H 8 GLU C 46 PRO C 47 0 SHEET 2 H 8 THR C 31 ASP C 37 -1 N ARG C 35 O GLU C 46 SHEET 3 H 8 ARG C 21 VAL C 28 -1 N GLU C 24 O PHE C 36 SHEET 4 H 8 HIS C 3 VAL C 12 -1 N PHE C 8 O VAL C 25 SHEET 5 H 8 THR C 94 VAL C 103 -1 O SER C 99 N TYR C 7 SHEET 6 H 8 LEU C 109 TYR C 118 -1 O LEU C 110 N GLU C 102 SHEET 7 H 8 CYS C 121 LEU C 126 -1 O ILE C 124 N TYR C 116 SHEET 8 H 8 TRP C 133 ALA C 135 -1 O THR C 134 N ALA C 125 SHEET 1 I 4 LYS C 186 SER C 193 0 SHEET 2 I 4 LYS C 198 PHE C 208 -1 O THR C 200 N HIS C 192 SHEET 3 I 4 PHE C 241 PRO C 250 -1 O ALA C 245 N CYS C 203 SHEET 4 I 4 GLU C 229 LEU C 230 -1 N GLU C 229 O SER C 246 SHEET 1 J 4 LYS C 186 SER C 193 0 SHEET 2 J 4 LYS C 198 PHE C 208 -1 O THR C 200 N HIS C 192 SHEET 3 J 4 PHE C 241 PRO C 250 -1 O ALA C 245 N CYS C 203 SHEET 4 J 4 ARG C 234 PRO C 235 -1 N ARG C 234 O GLN C 242 SHEET 1 K 4 GLU C 222 GLU C 223 0 SHEET 2 K 4 THR C 214 LEU C 219 -1 N LEU C 219 O GLU C 222 SHEET 3 K 4 TYR C 257 TYR C 262 -1 O THR C 258 N GLN C 218 SHEET 4 K 4 LEU C 270 LEU C 272 -1 O LEU C 272 N CYS C 259 SHEET 1 L 4 GLN D 6 SER D 11 0 SHEET 2 L 4 ASN D 21 PHE D 30 -1 O ASN D 24 N TYR D 10 SHEET 3 L 4 PHE D 62 PHE D 70 -1 O ALA D 66 N CYS D 25 SHEET 4 L 4 GLU D 50 MET D 51 -1 N GLU D 50 O HIS D 67 SHEET 1 M 4 GLN D 6 SER D 11 0 SHEET 2 M 4 ASN D 21 PHE D 30 -1 O ASN D 24 N TYR D 10 SHEET 3 M 4 PHE D 62 PHE D 70 -1 O ALA D 66 N CYS D 25 SHEET 4 M 4 SER D 55 PHE D 56 -1 N SER D 55 O TYR D 63 SHEET 1 N 4 LYS D 44 LYS D 45 0 SHEET 2 N 4 GLU D 36 LYS D 41 -1 N LYS D 41 O LYS D 44 SHEET 3 N 4 TYR D 78 LYS D 83 -1 O ALA D 79 N LEU D 40 SHEET 4 N 4 LYS D 91 TYR D 94 -1 O LYS D 91 N VAL D 82 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.08 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.01 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.03 SSBOND 4 CYS C 101 CYS C 164 1555 1555 2.06 SSBOND 5 CYS C 203 CYS C 259 1555 1555 2.02 SSBOND 6 CYS D 25 CYS D 80 1555 1555 2.04 LINK C ARG E 1 N ABA E 2 1555 1555 1.36 LINK C ABA E 2 N VAL E 3 1555 1555 1.33 LINK C ARG F 1 N ABA F 2 1555 1555 1.34 LINK C ABA F 2 N VAL F 3 1555 1555 1.35 CISPEP 1 TYR A 209 PRO A 210 0 1.46 CISPEP 2 HIS B 31 PRO B 32 0 4.18 CISPEP 3 TYR C 209 PRO C 210 0 -3.63 CISPEP 4 HIS D 31 PRO D 32 0 9.55 SITE 1 AC1 4 LYS C 186 ALA C 187 LEU C 270 HOH C 577 SITE 1 AC2 7 GLU C 232 THR C 233 HOH C 649 TYR D 26 SITE 2 AC2 7 THR D 28 GLN D 29 HOH D 207 SITE 1 AC3 2 PHE D 70 THR D 71 SITE 1 AC4 35 TYR A 7 GLU A 24 ARG A 62 GLU A 63 SITE 2 AC4 35 LYS A 66 ASN A 70 SER A 73 PHE A 74 SITE 3 AC4 35 ASP A 77 THR A 80 LEU A 81 TYR A 84 SITE 4 AC4 35 VAL A 97 SER A 99 GLN A 114 TYR A 116 SITE 5 AC4 35 THR A 143 LYS A 146 TRP A 147 GLU A 152 SITE 6 AC4 35 ARG A 155 TYR A 159 TRP A 167 TYR A 171 SITE 7 AC4 35 HOH A 303 HOH A 330 HOH A 349 HOH A 500 SITE 8 AC4 35 HOH A 545 HOH E 102 HOH E 103 HOH E 104 SITE 9 AC4 35 HOH E 105 HOH E 106 HOH E 109 SITE 1 AC5 32 TYR C 7 GLU C 24 ARG C 62 GLU C 63 SITE 2 AC5 32 LYS C 66 ASN C 70 SER C 73 PHE C 74 SITE 3 AC5 32 VAL C 76 ASP C 77 THR C 80 LEU C 81 SITE 4 AC5 32 TYR C 84 TYR C 116 THR C 143 LYS C 146 SITE 5 AC5 32 TRP C 147 GLU C 152 ARG C 155 TYR C 159 SITE 6 AC5 32 TRP C 167 TYR C 171 HOH C 401 HOH C 415 SITE 7 AC5 32 HOH C 543 HOH F 101 HOH F 102 HOH F 103 SITE 8 AC5 32 HOH F 104 HOH F 108 HOH F 109 HOH F 112 CRYST1 66.470 90.750 89.520 90.00 111.58 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015044 0.000000 0.005950 0.00000 SCALE2 0.000000 0.011019 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012013 0.00000