HEADER HYDROLASE 15-MAR-14 4PVA TITLE CRYSTAL STRUCTURE OF GH62 HYDROLASE FROM THERMOPHILIC FUNGUS TITLE 2 SCYTALIDIUM THERMOPHILUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: GH62 HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCYTALIDIUM THERMOPHILUM; SOURCE 3 ORGANISM_TAXID: 85995; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ARABINOFURANOSIDASE, ARABINOFURANOHYDROLASE, GH62 HYDROLASE, FUNGAL KEYWDS 2 GENOMICS, ARABINOXYLAN, LIGNOCELLULOSE DEGRADATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.NOCEK,A.P.KAUR,X.XU,H.CUI,A.SAVCHENKO REVDAT 2 06-MAY-15 4PVA 1 JRNL REVDAT 1 19-NOV-14 4PVA 0 JRNL AUTH A.P.KAUR,B.P.NOCEK,X.XU,M.J.LOWDEN,J.F.LEYVA,P.J.STOGIOS, JRNL AUTH 2 H.CUI,R.DI LEO,J.POWLOWSKI,A.TSANG,A.SAVCHENKO JRNL TITL FUNCTIONAL AND STRUCTURAL DIVERSITY IN GH62 JRNL TITL 2 ALPHA-L-ARABINOFURANOSIDASES FROM THE THERMOPHILIC FUNGUS JRNL TITL 3 SCYTALIDIUM THERMOPHILUM. JRNL REF MICROB BIOTECHNOL V. 8 419 2015 JRNL REFN JRNL PMID 25267315 JRNL DOI 10.1111/1751-7915.12168 REMARK 2 REMARK 2 RESOLUTION. 1.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.9 REMARK 3 NUMBER OF REFLECTIONS : 84561 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.162 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4442 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.23 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1176 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 16.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2638 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 514 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.040 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.042 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.026 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.170 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.974 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2816 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2486 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3866 ; 1.897 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5726 ; 1.100 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 344 ; 7.645 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;31.786 ;24.830 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 402 ;10.671 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;17.346 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 397 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3279 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 696 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -7 A 35 REMARK 3 ORIGIN FOR THE GROUP (A): -1.8728 1.0227 2.8620 REMARK 3 T TENSOR REMARK 3 T11: 0.0361 T22: 0.0896 REMARK 3 T33: 0.0562 T12: 0.0157 REMARK 3 T13: -0.0071 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 1.2730 L22: 1.2926 REMARK 3 L33: 0.9703 L12: -0.0317 REMARK 3 L13: -0.0811 L23: -0.2195 REMARK 3 S TENSOR REMARK 3 S11: -0.0406 S12: -0.1354 S13: 0.0171 REMARK 3 S21: -0.0244 S22: 0.0627 S23: -0.1111 REMARK 3 S31: -0.0433 S32: 0.1106 S33: -0.0221 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 36 A 52 REMARK 3 ORIGIN FOR THE GROUP (A): -28.8293 -13.3196 2.7445 REMARK 3 T TENSOR REMARK 3 T11: 0.0550 T22: 0.0490 REMARK 3 T33: 0.1250 T12: 0.0063 REMARK 3 T13: 0.0325 T23: 0.0741 REMARK 3 L TENSOR REMARK 3 L11: 3.0248 L22: 0.1469 REMARK 3 L33: 0.4712 L12: -0.3539 REMARK 3 L13: 0.1831 L23: 0.1956 REMARK 3 S TENSOR REMARK 3 S11: -0.0791 S12: -0.0975 S13: -0.2491 REMARK 3 S21: 0.0761 S22: 0.0306 S23: 0.0758 REMARK 3 S31: 0.1353 S32: 0.0074 S33: 0.0485 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 53 A 137 REMARK 3 ORIGIN FOR THE GROUP (A): -29.3000 1.5084 6.5268 REMARK 3 T TENSOR REMARK 3 T11: 0.0255 T22: 0.0888 REMARK 3 T33: 0.0948 T12: 0.0316 REMARK 3 T13: 0.0264 T23: 0.0649 REMARK 3 L TENSOR REMARK 3 L11: 0.3713 L22: 0.4824 REMARK 3 L33: 0.0388 L12: -0.0266 REMARK 3 L13: 0.0121 L23: -0.0982 REMARK 3 S TENSOR REMARK 3 S11: -0.0665 S12: -0.1329 S13: -0.0615 REMARK 3 S21: 0.0218 S22: 0.1267 S23: 0.1551 REMARK 3 S31: -0.0127 S32: -0.0337 S33: -0.0602 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 138 A 147 REMARK 3 ORIGIN FOR THE GROUP (A): -34.5089 5.0312 13.0940 REMARK 3 T TENSOR REMARK 3 T11: 0.0549 T22: 0.1426 REMARK 3 T33: 0.1008 T12: 0.0731 REMARK 3 T13: 0.0696 T23: 0.0874 REMARK 3 L TENSOR REMARK 3 L11: 1.6682 L22: 2.5573 REMARK 3 L33: 0.0688 L12: 0.0659 REMARK 3 L13: 0.3162 L23: 0.1141 REMARK 3 S TENSOR REMARK 3 S11: -0.1766 S12: -0.3145 S13: -0.1082 REMARK 3 S21: 0.2573 S22: 0.2008 S23: 0.3741 REMARK 3 S31: -0.0289 S32: -0.0627 S33: -0.0242 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 148 A 177 REMARK 3 ORIGIN FOR THE GROUP (A): -28.6519 13.3269 -8.5517 REMARK 3 T TENSOR REMARK 3 T11: 0.0450 T22: 0.0483 REMARK 3 T33: 0.0827 T12: -0.0050 REMARK 3 T13: -0.0113 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.6641 L22: 0.4121 REMARK 3 L33: 0.0498 L12: -0.2099 REMARK 3 L13: 0.1309 L23: -0.0329 REMARK 3 S TENSOR REMARK 3 S11: -0.0345 S12: -0.0044 S13: 0.0054 REMARK 3 S21: -0.0072 S22: 0.0479 S23: 0.1356 REMARK 3 S31: 0.0140 S32: 0.0188 S33: -0.0134 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 178 A 182 REMARK 3 ORIGIN FOR THE GROUP (A): -16.4505 26.6109 9.0685 REMARK 3 T TENSOR REMARK 3 T11: 0.0488 T22: 0.1401 REMARK 3 T33: 0.1277 T12: 0.0370 REMARK 3 T13: 0.0199 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 6.1268 L22: 20.7120 REMARK 3 L33: 5.1168 L12: -3.1082 REMARK 3 L13: 2.1092 L23: 8.0956 REMARK 3 S TENSOR REMARK 3 S11: 0.2459 S12: 0.6037 S13: 0.6429 REMARK 3 S21: -0.5021 S22: -0.2219 S23: -0.8281 REMARK 3 S31: -0.0953 S32: 0.2541 S33: -0.0240 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 183 A 219 REMARK 3 ORIGIN FOR THE GROUP (A): -22.9591 18.6261 -5.4510 REMARK 3 T TENSOR REMARK 3 T11: 0.0525 T22: 0.0567 REMARK 3 T33: 0.0951 T12: -0.0090 REMARK 3 T13: -0.0099 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 0.5928 L22: 0.4193 REMARK 3 L33: 0.9603 L12: -0.4738 REMARK 3 L13: -0.1311 L23: 0.2192 REMARK 3 S TENSOR REMARK 3 S11: -0.0362 S12: -0.0145 S13: 0.0803 REMARK 3 S21: 0.0114 S22: 0.0459 S23: -0.0240 REMARK 3 S31: -0.0297 S32: 0.0399 S33: -0.0098 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 220 A 254 REMARK 3 ORIGIN FOR THE GROUP (A): -12.5320 8.3751 -6.4645 REMARK 3 T TENSOR REMARK 3 T11: 0.0451 T22: 0.0626 REMARK 3 T33: 0.0484 T12: 0.0106 REMARK 3 T13: 0.0063 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.4548 L22: 0.5279 REMARK 3 L33: 0.6875 L12: -0.2053 REMARK 3 L13: 0.0159 L23: 0.1840 REMARK 3 S TENSOR REMARK 3 S11: -0.0078 S12: -0.0149 S13: 0.0128 REMARK 3 S21: -0.0213 S22: 0.0556 S23: -0.0083 REMARK 3 S31: 0.0057 S32: 0.0423 S33: -0.0478 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 255 A 259 REMARK 3 ORIGIN FOR THE GROUP (A): -13.5163 -8.0574 -14.1198 REMARK 3 T TENSOR REMARK 3 T11: 0.1719 T22: 0.1536 REMARK 3 T33: 0.2262 T12: 0.0490 REMARK 3 T13: -0.0066 T23: 0.1199 REMARK 3 L TENSOR REMARK 3 L11: 4.7688 L22: 12.5682 REMARK 3 L33: 12.9987 L12: -7.3945 REMARK 3 L13: 1.6114 L23: 0.4939 REMARK 3 S TENSOR REMARK 3 S11: 0.6158 S12: 0.2620 S13: -0.0488 REMARK 3 S21: -0.8877 S22: -0.5693 S23: -0.2061 REMARK 3 S31: 0.5812 S32: 0.3131 S33: -0.0465 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 260 A 268 REMARK 3 ORIGIN FOR THE GROUP (A): -9.0734 9.0734 -6.3333 REMARK 3 T TENSOR REMARK 3 T11: 0.0566 T22: 0.0601 REMARK 3 T33: 0.0645 T12: -0.0015 REMARK 3 T13: 0.0144 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 1.0094 L22: 1.1612 REMARK 3 L33: 0.3760 L12: 0.4043 REMARK 3 L13: 0.1572 L23: 0.6359 REMARK 3 S TENSOR REMARK 3 S11: -0.0061 S12: -0.0212 S13: 0.0683 REMARK 3 S21: -0.0592 S22: 0.0377 S23: 0.0001 REMARK 3 S31: -0.0154 S32: 0.0224 S33: -0.0316 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 269 A 294 REMARK 3 ORIGIN FOR THE GROUP (A): -7.0261 1.9477 -5.5742 REMARK 3 T TENSOR REMARK 3 T11: 0.0511 T22: 0.0629 REMARK 3 T33: 0.0780 T12: 0.0086 REMARK 3 T13: 0.0032 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 0.4894 L22: 0.4453 REMARK 3 L33: 0.0598 L12: -0.1763 REMARK 3 L13: 0.1063 L23: 0.0339 REMARK 3 S TENSOR REMARK 3 S11: -0.0202 S12: -0.0370 S13: -0.0032 REMARK 3 S21: -0.0385 S22: 0.0736 S23: -0.0703 REMARK 3 S31: -0.0022 S32: 0.0132 S33: -0.0534 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 295 A 299 REMARK 3 ORIGIN FOR THE GROUP (A): -14.0224 -15.1080 -3.0737 REMARK 3 T TENSOR REMARK 3 T11: 0.1684 T22: 0.1257 REMARK 3 T33: 0.3167 T12: 0.0780 REMARK 3 T13: 0.0798 T23: 0.1866 REMARK 3 L TENSOR REMARK 3 L11: 4.7202 L22: 3.0540 REMARK 3 L33: 25.3839 L12: 2.0026 REMARK 3 L13: 2.7550 L23: -6.0689 REMARK 3 S TENSOR REMARK 3 S11: 0.1158 S12: -0.1831 S13: -0.6293 REMARK 3 S21: -0.3367 S22: -0.1399 S23: -0.3978 REMARK 3 S31: 1.2976 S32: 0.0776 S33: 0.0240 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 300 A 332 REMARK 3 ORIGIN FOR THE GROUP (A): -15.1907 1.2837 4.5989 REMARK 3 T TENSOR REMARK 3 T11: 0.0477 T22: 0.0807 REMARK 3 T33: 0.0491 T12: 0.0263 REMARK 3 T13: 0.0048 T23: 0.0263 REMARK 3 L TENSOR REMARK 3 L11: 0.4940 L22: 0.6670 REMARK 3 L33: 0.2067 L12: -0.0341 REMARK 3 L13: -0.0571 L23: 0.2490 REMARK 3 S TENSOR REMARK 3 S11: -0.0499 S12: -0.1201 S13: -0.0560 REMARK 3 S21: 0.0250 S22: 0.0911 S23: 0.0186 REMARK 3 S31: 0.0116 S32: -0.0091 S33: -0.0412 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 333 A 338 REMARK 3 ORIGIN FOR THE GROUP (A): -25.7394 -13.9128 -12.9958 REMARK 3 T TENSOR REMARK 3 T11: 0.0577 T22: 0.0855 REMARK 3 T33: 0.0720 T12: -0.0180 REMARK 3 T13: -0.0097 T23: -0.0376 REMARK 3 L TENSOR REMARK 3 L11: 6.8034 L22: 10.0859 REMARK 3 L33: 1.5278 L12: -3.2406 REMARK 3 L13: -0.3441 L23: 1.5046 REMARK 3 S TENSOR REMARK 3 S11: -0.0119 S12: 0.5289 S13: -0.4368 REMARK 3 S21: -0.3091 S22: 0.1011 S23: 0.3499 REMARK 3 S31: -0.0026 S32: 0.1823 S33: -0.0892 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 339 A 350 REMARK 3 ORIGIN FOR THE GROUP (A): -19.7407 -8.6377 -1.0844 REMARK 3 T TENSOR REMARK 3 T11: 0.0446 T22: 0.0372 REMARK 3 T33: 0.0775 T12: 0.0116 REMARK 3 T13: 0.0086 T23: 0.0345 REMARK 3 L TENSOR REMARK 3 L11: 2.4167 L22: 0.3007 REMARK 3 L33: 1.0380 L12: 0.5430 REMARK 3 L13: 1.0963 L23: 0.4400 REMARK 3 S TENSOR REMARK 3 S11: -0.0375 S12: -0.0359 S13: -0.1749 REMARK 3 S21: 0.0275 S22: 0.0573 S23: 0.0355 REMARK 3 S31: 0.0214 S32: -0.0084 S33: -0.0197 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4PVA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAR-14. REMARK 100 THE RCSB ID CODE IS RCSB085262. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL3000 REMARK 200 DATA SCALING SOFTWARE : HKL3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 97754 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.230 REMARK 200 RESOLUTION RANGE LOW (A) : 28.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 52.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL3000, MLPHARE,DM, ARP/WARP, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 2.2 M AMMONIUM DI- REMARK 280 HYDRATE PHOSPHATE, 12% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 20.40500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.81000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 ARG A -8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A -7 CG CD OE1 OE2 REMARK 470 GLU A 179 CD OE1 OE2 REMARK 470 LYS A 184 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 110 67.48 62.22 REMARK 500 ASP A 141 76.72 -114.59 REMARK 500 ASP A 171 72.80 68.10 REMARK 500 ASN A 195 27.06 -141.46 REMARK 500 LEU A 228 59.43 -140.10 REMARK 500 GLU A 230 -166.83 -173.17 REMARK 500 ASP A 270 63.66 -107.70 REMARK 500 LEU A 276 -79.79 -110.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1098 DISTANCE = 5.80 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 506 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PVI RELATED DB: PDB DBREF 4PVA A -21 350 PDB 4PVA 4PVA -21 350 SEQRES 1 A 342 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 342 ARG GLU ASN LEU TYR PHE GLN GLY SER SER TRP LYS TRP SEQRES 3 A 342 VAL SER THR GLY PRO LEU VAL PHE PRO LYS ASN ASP GLU SEQRES 4 A 342 ARG ASN ILE ALA GLY ILE LYS ASP PRO THR ALA VAL LEU SEQRES 5 A 342 ILE ASN GLY THR TYR HIS VAL PHE ALA SER THR ALA LYS SEQRES 6 A 342 SER GLU GLY TYR ASN MSE VAL TYR PHE ASN PHE THR ASP SEQRES 7 A 342 PHE ALA GLU ALA ASN ASN ALA PRO PHE TYR TYR LEU ASP SEQRES 8 A 342 GLN ALA PRO LEU GLY TYR GLY TYR ARG ALA ALA PRO GLN SEQRES 9 A 342 VAL PHE TYR PHE GLU PRO HIS LYS LEU TRP TYR LEU VAL SEQRES 10 A 342 TYR GLN ASN GLY ASN ALA ALA TYR SER THR ASN PRO ASP SEQRES 11 A 342 ILE ASN ASP PRO SER LYS TRP THR ALA PRO GLU VAL PHE SEQRES 12 A 342 TYR PRO ASN GLY MSE PRO LYS ILE ILE ALA ASP ASN ILE SEQRES 13 A 342 GLY ASN GLY TYR TRP VAL ASP MSE TRP VAL VAL CYS ASP SEQRES 14 A 342 ASP GLU GLU ASP PRO ASN LYS ALA LEU CYS HIS LEU PHE SEQRES 15 A 342 SER SER ASP ASP ASN GLY HIS LEU TYR ARG SER GLN THR SEQRES 16 A 342 THR LEU ALA GLN PHE PRO ARG GLY MSE SER GLU PRO GLU SEQRES 17 A 342 ILE VAL LEU GLN ASP THR GLN ASN ILE TYR ALA LEU TRP SEQRES 18 A 342 GLU ALA ALA CYS ILE TYR ARG ILE LYS GLY ALA GLU GLY SEQRES 19 A 342 THR GLN LYS TYR LEU LEU LEU VAL GLU ALA ILE GLY GLN SEQRES 20 A 342 GLU GLY HIS ARG TYR PHE ARG SER TRP THR SER ASP ARG SEQRES 21 A 342 ILE ASP GLY GLN TRP ILE PRO LEU ALA ASP THR GLU ALA SEQRES 22 A 342 ASN PRO TRP ALA GLY GLU ALA ASN VAL VAL PHE GLU GLY SEQRES 23 A 342 GLN LYS TRP THR LYS SER ILE SER HIS GLY GLU VAL ILE SEQRES 24 A 342 ARG THR LEU THR ASP GLN THR LEU THR LEU ASP LEU SER SEQRES 25 A 342 GLU PRO ILE GLN PHE LEU TYR GLN GLY VAL ASP PRO ASN SEQRES 26 A 342 ALA GLN THR GLU TYR ASN ALA LEU PRO TRP ARG LEU GLY SEQRES 27 A 342 LEU ILE THR GLN MODRES 4PVA MSE A 79 MET SELENOMETHIONINE MODRES 4PVA MSE A 156 MET SELENOMETHIONINE MODRES 4PVA MSE A 172 MET SELENOMETHIONINE MODRES 4PVA MSE A 212 MET SELENOMETHIONINE HET MSE A 79 8 HET MSE A 156 8 HET MSE A 172 8 HET MSE A 212 8 HET GOL A 501 6 HET PO4 A 502 5 HET PO4 A 503 5 HET PO4 A 504 5 HET PO4 A 505 5 HET PO4 A 506 5 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 GOL C3 H8 O3 FORMUL 3 PO4 5(O4 P 3-) FORMUL 8 HOH *514(H2 O) HELIX 1 1 ASP A 86 ALA A 93 5 8 HELIX 2 2 ASP A 99 ALA A 101 5 3 HELIX 3 3 GLU A 117 LYS A 120 5 4 HELIX 4 4 ASP A 141 TRP A 145 5 5 HELIX 5 5 PRO A 157 ILE A 164 1 8 HELIX 6 6 ASN A 224 TRP A 229 5 6 HELIX 7 7 GLN A 255 GLY A 257 5 3 HELIX 8 8 GLU A 337 LEU A 341 5 5 SHEET 1 A 5 VAL A 290 PHE A 292 0 SHEET 2 A 5 TRP A 34 SER A 36 1 N TRP A 34 O VAL A 291 SHEET 3 A 5 ARG A 344 THR A 349 -1 O THR A 349 N VAL A 35 SHEET 4 A 5 GLN A 324 GLY A 329 -1 N PHE A 325 O ILE A 348 SHEET 5 A 5 SER A 302 VAL A 306 -1 N SER A 302 O GLN A 328 SHEET 1 B 4 GLY A 52 ILE A 61 0 SHEET 2 B 4 THR A 64 LYS A 73 -1 O HIS A 66 N VAL A 59 SHEET 3 B 4 GLY A 76 PHE A 84 -1 O PHE A 84 N TYR A 65 SHEET 4 B 4 TYR A 96 TYR A 97 -1 O TYR A 96 N TYR A 81 SHEET 1 C 4 ALA A 109 PHE A 116 0 SHEET 2 C 4 LEU A 121 GLN A 127 -1 O TYR A 123 N PHE A 114 SHEET 3 C 4 ALA A 131 ASN A 136 -1 O ALA A 132 N TYR A 126 SHEET 4 C 4 GLU A 149 VAL A 150 -1 O GLU A 149 N TYR A 133 SHEET 1 D 4 VAL A 170 CYS A 176 0 SHEET 2 D 4 LEU A 186 SER A 192 -1 O PHE A 190 N TRP A 173 SHEET 3 D 4 HIS A 197 THR A 204 -1 O THR A 203 N CYS A 187 SHEET 4 D 4 GLU A 216 GLN A 220 -1 O VAL A 218 N LEU A 198 SHEET 1 E 5 ILE A 274 PRO A 275 0 SHEET 2 E 5 ARG A 259 SER A 266 -1 N THR A 265 O ILE A 274 SHEET 3 E 5 TYR A 246 ILE A 253 -1 N ALA A 252 O TYR A 260 SHEET 4 E 5 GLU A 230 ILE A 237 -1 N CYS A 233 O LEU A 249 SHEET 5 E 5 THR A 316 LEU A 317 1 O LEU A 317 N ARG A 236 LINK C ASN A 78 N MSE A 79 1555 1555 1.33 LINK C MSE A 79 N VAL A 80 1555 1555 1.32 LINK C GLY A 155 N MSE A 156 1555 1555 1.32 LINK C MSE A 156 N PRO A 157 1555 1555 1.34 LINK C ASP A 171 N MSE A 172 1555 1555 1.33 LINK C MSE A 172 N TRP A 173 1555 1555 1.33 LINK C GLY A 211 N MSE A 212 1555 1555 1.34 LINK C MSE A 212 N SER A 213 1555 1555 1.32 CISPEP 1 PHE A 208 PRO A 209 0 7.55 SITE 1 AC1 10 VAL A 35 SER A 36 LEU A 219 GLY A 271 SITE 2 AC1 10 GLN A 272 TRP A 273 GLY A 294 HOH A 642 SITE 3 AC1 10 HOH A 726 HOH A 753 SITE 1 AC2 9 ARG A 108 GLU A 117 LYS A 120 ASN A 128 SITE 2 AC2 9 HOH A 727 HOH A 743 HOH A 885 HOH A 927 SITE 3 AC2 9 HOH A 999 SITE 1 AC3 10 ARG A 48 ILE A 50 LYS A 73 ASP A 99 SITE 2 AC3 10 HOH A 737 HOH A 764 HOH A1056 HOH A1095 SITE 3 AC3 10 HOH A1104 HOH A1108 SITE 1 AC4 4 ASP A 178 ARG A 236 GLU A 241 HOH A1042 SITE 1 AC5 10 LYS A 54 GLU A 230 ARG A 259 HIS A 303 SITE 2 AC5 10 GLN A 328 TYR A 338 HOH A 624 HOH A 672 SITE 3 AC5 10 HOH A 747 HOH A 857 SITE 1 AC6 6 ASP A 177 HIS A 188 ARG A 268 ILE A 269 SITE 2 AC6 6 ASP A 270 HOH A 611 CRYST1 72.004 72.004 61.215 90.00 90.00 120.00 P 31 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013888 0.008018 0.000000 0.00000 SCALE2 0.000000 0.016037 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016336 0.00000