HEADER HYDROLASE 17-MAR-14 4PVI TITLE CRYSTAL STRUCTURE OF GH62 HYDROLASE IN COMPLEX WITH XYLOTRIOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GH62 HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCYTALIDIUM THERMOPHILUM; SOURCE 3 ORGANISM_TAXID: 85995; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ARABINOFURANOSIDASE, ARABINOFURANOHYDROLASE, GH62 HYDROLASE, FUNGAL KEYWDS 2 GENOMICS, ARABINOXYLAN, LIGNOCELLULOSE DEGRADATION, XYLOTRIOSE, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.NOCEK,A.P.KAUR,X.XU,H.CUI,A.SAVCHENKO REVDAT 3 20-SEP-23 4PVI 1 HETSYN REVDAT 2 29-JUL-20 4PVI 1 COMPND REMARK HET HETNAM REVDAT 2 2 1 FORMUL LINK SITE ATOM REVDAT 1 24-SEP-14 4PVI 0 JRNL AUTH A.P.KAUR,B.NOCEK,X.XU,M.J.LOWDEN,J.F.LEYVA,P.J.STOGIOS, JRNL AUTH 2 H.CUI,R.D.LEO,J.POWLOWSKI,A.TSANG,A.SAVCHENKO JRNL TITL CRYSTAL STRUCTURE OF GH62 HYDROLASE IN COMPLEX WITH JRNL TITL 2 XYLOTRIOSE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.610 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.1 REMARK 3 NUMBER OF REFLECTIONS : 68294 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.129 REMARK 3 FREE R VALUE : 0.159 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 3444 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.7162 - 4.3180 0.73 3350 213 0.1204 0.1238 REMARK 3 2 4.3180 - 3.4307 0.70 3297 123 0.1109 0.1397 REMARK 3 3 3.4307 - 2.9980 0.72 3330 191 0.1165 0.1674 REMARK 3 4 2.9980 - 2.7243 0.74 3376 208 0.1245 0.1584 REMARK 3 5 2.7243 - 2.5293 0.74 3485 187 0.1244 0.1643 REMARK 3 6 2.5293 - 2.3803 0.73 3370 185 0.1229 0.1493 REMARK 3 7 2.3803 - 2.2612 0.71 3285 157 0.1202 0.1630 REMARK 3 8 2.2612 - 2.1628 0.65 3042 147 0.1256 0.1616 REMARK 3 9 2.1628 - 2.0796 0.59 2724 145 0.1266 0.1590 REMARK 3 10 2.0796 - 2.0079 0.57 2683 126 0.1335 0.1587 REMARK 3 11 2.0079 - 1.9451 0.53 2412 132 0.1330 0.1557 REMARK 3 12 1.9451 - 1.8896 0.51 2367 146 0.1399 0.1761 REMARK 3 13 1.8896 - 1.8398 0.49 2244 122 0.1369 0.1497 REMARK 3 14 1.8398 - 1.7950 0.49 2282 119 0.1389 0.1847 REMARK 3 15 1.7950 - 1.7542 0.49 2277 126 0.1434 0.2132 REMARK 3 16 1.7542 - 1.7169 0.49 2324 101 0.1481 0.1732 REMARK 3 17 1.7169 - 1.6825 0.49 2299 114 0.1520 0.1863 REMARK 3 18 1.6825 - 1.6508 0.49 2265 116 0.1538 0.1743 REMARK 3 19 1.6508 - 1.6213 0.49 2342 104 0.1552 0.1615 REMARK 3 20 1.6213 - 1.5938 0.49 2235 126 0.1599 0.1961 REMARK 3 21 1.5938 - 1.5681 0.49 2323 120 0.1705 0.2032 REMARK 3 22 1.5681 - 1.5440 0.49 2230 141 0.1844 0.2053 REMARK 3 23 1.5440 - 1.5213 0.47 2199 96 0.1913 0.2489 REMARK 3 24 1.5213 - 1.4999 0.39 1820 111 0.1954 0.2330 REMARK 3 25 1.4999 - 1.4796 0.28 1289 88 0.1994 0.2066 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2819 REMARK 3 ANGLE : 1.507 3876 REMARK 3 CHIRALITY : 0.134 409 REMARK 3 PLANARITY : 0.008 503 REMARK 3 DIHEDRAL : 21.501 1055 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -7 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4337 -24.0659 -5.7023 REMARK 3 T TENSOR REMARK 3 T11: 0.1007 T22: 0.0774 REMARK 3 T33: 0.1088 T12: 0.0091 REMARK 3 T13: 0.0313 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.1837 L22: 0.3515 REMARK 3 L33: 0.2600 L12: -0.1518 REMARK 3 L13: -0.0208 L23: 0.0027 REMARK 3 S TENSOR REMARK 3 S11: 0.0045 S12: 0.0208 S13: -0.0033 REMARK 3 S21: -0.1349 S22: -0.0040 S23: -0.1820 REMARK 3 S31: 0.0206 S32: 0.0578 S33: 0.0825 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0476 -9.5938 -0.6090 REMARK 3 T TENSOR REMARK 3 T11: 0.1168 T22: 0.0782 REMARK 3 T33: 0.1013 T12: -0.0062 REMARK 3 T13: 0.0077 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.2128 L22: 0.3306 REMARK 3 L33: 0.1302 L12: -0.0944 REMARK 3 L13: 0.0111 L23: 0.0755 REMARK 3 S TENSOR REMARK 3 S11: 0.0392 S12: -0.0271 S13: 0.0765 REMARK 3 S21: -0.0611 S22: 0.0010 S23: -0.0713 REMARK 3 S31: -0.0538 S32: 0.0074 S33: 0.0153 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 144 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5869 -16.4890 5.0341 REMARK 3 T TENSOR REMARK 3 T11: 0.0871 T22: 0.0817 REMARK 3 T33: 0.0679 T12: 0.0005 REMARK 3 T13: -0.0089 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.0971 L22: 0.3515 REMARK 3 L33: 0.0715 L12: 0.0170 REMARK 3 L13: -0.0583 L23: 0.1474 REMARK 3 S TENSOR REMARK 3 S11: 0.0233 S12: -0.0137 S13: 0.0157 REMARK 3 S21: -0.0314 S22: 0.0085 S23: 0.0767 REMARK 3 S31: 0.0190 S32: -0.0294 S33: 0.0168 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 208 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1168 -30.2715 5.3913 REMARK 3 T TENSOR REMARK 3 T11: 0.1059 T22: 0.0857 REMARK 3 T33: 0.0922 T12: 0.0003 REMARK 3 T13: -0.0145 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.0820 L22: 0.1696 REMARK 3 L33: 0.1030 L12: 0.0410 REMARK 3 L13: -0.1164 L23: -0.0048 REMARK 3 S TENSOR REMARK 3 S11: -0.0501 S12: -0.0105 S13: -0.0922 REMARK 3 S21: 0.0103 S22: 0.0542 S23: 0.0172 REMARK 3 S31: 0.0457 S32: -0.0012 S33: -0.0050 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 238 THROUGH 257 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0917 -31.0118 6.9807 REMARK 3 T TENSOR REMARK 3 T11: 0.1116 T22: 0.0937 REMARK 3 T33: 0.1094 T12: -0.0005 REMARK 3 T13: 0.0027 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.0344 L22: 0.0470 REMARK 3 L33: 0.0138 L12: 0.0663 REMARK 3 L13: 0.0169 L23: -0.0006 REMARK 3 S TENSOR REMARK 3 S11: -0.0447 S12: -0.0826 S13: 0.0022 REMARK 3 S21: 0.0244 S22: 0.0894 S23: 0.0797 REMARK 3 S31: 0.0233 S32: -0.0313 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 258 THROUGH 273 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9203 -38.3432 3.1858 REMARK 3 T TENSOR REMARK 3 T11: 0.1249 T22: 0.1175 REMARK 3 T33: 0.1460 T12: 0.0249 REMARK 3 T13: 0.0077 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 0.0150 L22: 0.0169 REMARK 3 L33: 0.0170 L12: 0.0121 REMARK 3 L13: 0.0065 L23: -0.0064 REMARK 3 S TENSOR REMARK 3 S11: -0.0206 S12: 0.0742 S13: -0.0115 REMARK 3 S21: -0.0669 S22: 0.1250 S23: -0.1798 REMARK 3 S31: 0.1100 S32: 0.0941 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 274 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4817 -26.3637 -8.4198 REMARK 3 T TENSOR REMARK 3 T11: 0.1580 T22: 0.0890 REMARK 3 T33: 0.0801 T12: 0.0068 REMARK 3 T13: -0.0035 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.0186 L22: 0.0031 REMARK 3 L33: 0.0320 L12: 0.0134 REMARK 3 L13: -0.0381 L23: -0.0298 REMARK 3 S TENSOR REMARK 3 S11: 0.0017 S12: 0.0450 S13: 0.0349 REMARK 3 S21: -0.1278 S22: 0.0049 S23: -0.0131 REMARK 3 S31: 0.0268 S32: 0.0315 S33: 0.0031 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 295 THROUGH 321 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1914 -28.9511 3.8750 REMARK 3 T TENSOR REMARK 3 T11: 0.1113 T22: 0.1144 REMARK 3 T33: 0.1429 T12: 0.0089 REMARK 3 T13: -0.0131 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.0507 L22: 0.0863 REMARK 3 L33: 0.0726 L12: 0.0413 REMARK 3 L13: -0.0805 L23: -0.0685 REMARK 3 S TENSOR REMARK 3 S11: 0.0677 S12: -0.0561 S13: -0.1238 REMARK 3 S21: 0.0294 S22: -0.0550 S23: -0.1954 REMARK 3 S31: 0.0537 S32: 0.0237 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PVI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000085270. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 23.713 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.02500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 4PVA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M KH2PO4, 20% PEG3350, 2 MM CACL2, REMARK 280 20 MM XYLOTRIOSE , PH 8.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 20.69967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.39933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 ARG A -8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A -7 CG CD OE1 OE2 REMARK 470 LYS A 184 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1171 O HOH A 1186 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A -6 48.88 -89.47 REMARK 500 ASN A 78 -159.01 -148.35 REMARK 500 ALA A 110 68.72 66.05 REMARK 500 ASP A 171 75.09 68.57 REMARK 500 ASN A 195 25.35 -144.13 REMARK 500 GLU A 230 -169.76 -172.78 REMARK 500 LEU A 276 -77.48 -110.60 REMARK 500 HIS A 303 87.21 9.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PVA RELATED DB: PDB DBREF 4PVI A -21 350 PDB 4PVI 4PVI -21 350 SEQRES 1 A 342 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 342 ARG GLU ASN LEU TYR PHE GLN GLY SER SER TRP LYS TRP SEQRES 3 A 342 VAL SER THR GLY PRO LEU VAL PHE PRO LYS ASN ASP GLU SEQRES 4 A 342 ARG ASN ILE ALA GLY ILE LYS ASP PRO THR ALA VAL LEU SEQRES 5 A 342 ILE ASN GLY THR TYR HIS VAL PHE ALA SER THR ALA LYS SEQRES 6 A 342 SER GLU GLY TYR ASN MET VAL TYR PHE ASN PHE THR ASP SEQRES 7 A 342 PHE ALA GLU ALA ASN ASN ALA PRO PHE TYR TYR LEU ASP SEQRES 8 A 342 GLN ALA PRO LEU GLY TYR GLY TYR ARG ALA ALA PRO GLN SEQRES 9 A 342 VAL PHE TYR PHE GLU PRO HIS LYS LEU TRP TYR LEU VAL SEQRES 10 A 342 TYR GLN ASN GLY ASN ALA ALA TYR SER THR ASN PRO ASP SEQRES 11 A 342 ILE ASN ASP PRO SER LYS TRP THR ALA PRO GLU VAL PHE SEQRES 12 A 342 TYR PRO ASN GLY MET PRO LYS ILE ILE ALA ASP ASN ILE SEQRES 13 A 342 GLY ASN GLY TYR TRP VAL ASP MET TRP VAL VAL CYS ASP SEQRES 14 A 342 ASP GLU GLU ASP PRO ASN LYS ALA LEU CYS HIS LEU PHE SEQRES 15 A 342 SER SER ASP ASP ASN GLY HIS LEU TYR ARG SER GLN THR SEQRES 16 A 342 THR LEU ALA GLN PHE PRO ARG GLY MET SER GLU PRO GLU SEQRES 17 A 342 ILE VAL LEU GLN ASP THR GLN ASN ILE TYR ALA LEU TRP SEQRES 18 A 342 GLU ALA ALA CYS ILE TYR ARG ILE LYS GLY ALA GLU GLY SEQRES 19 A 342 THR GLN LYS TYR LEU LEU LEU VAL GLU ALA ILE GLY GLN SEQRES 20 A 342 GLU GLY HIS ARG TYR PHE ARG SER TRP THR SER ASP ARG SEQRES 21 A 342 ILE ASP GLY GLN TRP ILE PRO LEU ALA ASP THR GLU ALA SEQRES 22 A 342 ASN PRO TRP ALA GLY GLU ALA ASN VAL VAL PHE GLU GLY SEQRES 23 A 342 GLN LYS TRP THR LYS SER ILE SER HIS GLY GLU VAL ILE SEQRES 24 A 342 ARG THR LEU THR ASP GLN THR LEU THR LEU ASP LEU SER SEQRES 25 A 342 GLU PRO ILE GLN PHE LEU TYR GLN GLY VAL ASP PRO ASN SEQRES 26 A 342 ALA GLN THR GLU TYR ASN ALA LEU PRO TRP ARG LEU GLY SEQRES 27 A 342 LEU ILE THR GLN HET XYP B 1 10 HET XYP B 2 9 HET XYP B 3 9 HET PO4 A 602 5 HET PO4 A 603 5 HETNAM XYP BETA-D-XYLOPYRANOSE HETNAM PO4 PHOSPHATE ION HETSYN XYP BETA-D-XYLOSE; D-XYLOSE; XYLOSE FORMUL 2 XYP 3(C5 H10 O5) FORMUL 3 PO4 2(O4 P 3-) FORMUL 5 HOH *515(H2 O) HELIX 1 1 ASP A 86 ALA A 93 5 8 HELIX 2 2 ASP A 99 ALA A 101 5 3 HELIX 3 3 GLU A 117 LYS A 120 5 4 HELIX 4 4 ASP A 141 TRP A 145 5 5 HELIX 5 5 PRO A 157 ILE A 164 1 8 HELIX 6 6 ASN A 224 TRP A 229 5 6 HELIX 7 7 GLY A 286 ALA A 288 5 3 HELIX 8 8 GLU A 337 LEU A 341 5 5 SHEET 1 A 5 VAL A 290 PHE A 292 0 SHEET 2 A 5 TRP A 34 SER A 36 1 N SER A 36 O VAL A 291 SHEET 3 A 5 ARG A 344 THR A 349 -1 O THR A 349 N VAL A 35 SHEET 4 A 5 GLN A 324 GLY A 329 -1 N PHE A 325 O ILE A 348 SHEET 5 A 5 SER A 302 VAL A 306 -1 N GLU A 305 O LEU A 326 SHEET 1 B 4 GLY A 52 ILE A 61 0 SHEET 2 B 4 THR A 64 LYS A 73 -1 O HIS A 66 N VAL A 59 SHEET 3 B 4 GLY A 76 PHE A 84 -1 O PHE A 82 N VAL A 67 SHEET 4 B 4 TYR A 96 TYR A 97 -1 O TYR A 96 N TYR A 81 SHEET 1 C 4 ALA A 109 PHE A 116 0 SHEET 2 C 4 LEU A 121 GLN A 127 -1 O TYR A 123 N PHE A 114 SHEET 3 C 4 ALA A 131 ASN A 136 -1 O ALA A 132 N TYR A 126 SHEET 4 C 4 GLU A 149 VAL A 150 -1 O GLU A 149 N TYR A 133 SHEET 1 D 4 VAL A 170 CYS A 176 0 SHEET 2 D 4 LEU A 186 SER A 192 -1 O PHE A 190 N TRP A 173 SHEET 3 D 4 HIS A 197 THR A 204 -1 O THR A 203 N CYS A 187 SHEET 4 D 4 GLU A 216 GLN A 220 -1 O VAL A 218 N LEU A 198 SHEET 1 E 5 ILE A 274 PRO A 275 0 SHEET 2 E 5 ARG A 259 SER A 266 -1 N THR A 265 O ILE A 274 SHEET 3 E 5 TYR A 246 ILE A 253 -1 N ALA A 252 O TYR A 260 SHEET 4 E 5 GLU A 230 ILE A 237 -1 N CYS A 233 O LEU A 249 SHEET 5 E 5 THR A 316 LEU A 317 1 O LEU A 317 N ARG A 236 LINK O4 XYP B 1 C1 XYP B 2 1555 1555 1.44 LINK O4 XYP B 2 C1 XYP B 3 1555 1555 1.44 CISPEP 1 PHE A 208 PRO A 209 0 6.81 CRYST1 72.445 72.445 62.099 90.00 90.00 120.00 P 31 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013804 0.007969 0.000000 0.00000 SCALE2 0.000000 0.015939 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016103 0.00000