HEADER HYDROLASE 18-MAR-14 4PVP TITLE CRYSTAL STRUCTURE OF MALONATE-BOUND HUMAN L-ASPARAGINASE PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOASPARTYL PEPTIDASE/L-ASPARAGINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ASPARAGINASE-LIKE PROTEIN 1, BETA-ASPARTYL-PEPTIDASE, COMPND 5 ISOASPARTYL DIPEPTIDASE, L-ASPARAGINE AMIDOHYDROLASE, ISOASPARTYL COMPND 6 PEPTIDASE/L-ASPARAGINASE ALPHA CHAIN, ISOASPARTYL PEPTIDASE/L- COMPND 7 ASPARAGINASE BETA CHAIN; COMPND 8 EC: 3.4.19.5, 3.5.1.1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ALP, ASRGL1, CRASH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) C41; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET14B KEYWDS NTN ENZYME, HOMODIMER, HYDROLASE, L-ASPARAGINE EXPDTA X-RAY DIFFRACTION AUTHOR J.NOMME,A.LAVIE REVDAT 2 20-SEP-23 4PVP 1 REMARK SEQADV LINK REVDAT 1 26-MAR-14 4PVP 0 SPRSDE 26-MAR-14 4PVP 4GDT JRNL AUTH J.NOMME,Y.SU,M.KONRAD,A.LAVIE JRNL TITL STRUCTURES OF APO AND PRODUCT-BOUND HUMAN L-ASPARAGINASE: JRNL TITL 2 INSIGHTS INTO THE MECHANISM OF AUTOPROTEOLYSIS AND SUBSTRATE JRNL TITL 3 HYDROLYSIS. JRNL REF BIOCHEMISTRY V. 51 6816 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22861376 JRNL DOI 10.1021/BI300870G REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 45342 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2406 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1839 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 51.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4309 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 251 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.91000 REMARK 3 B22 (A**2) : -3.91000 REMARK 3 B33 (A**2) : 7.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.027 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.026 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.509 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4398 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5948 ; 1.210 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 593 ; 5.956 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;36.905 ;25.062 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 738 ;15.418 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;13.640 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 685 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3274 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2926 ; 0.488 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4657 ; 0.858 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1472 ; 1.255 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1291 ; 1.906 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : 1.000H, 1.000K, L REMARK 3 TWIN FRACTION : 0.505 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -1.000H-1.000K, 1.000K, -L REMARK 3 TWIN FRACTION : 0.495 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4PVP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000085277. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48285 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04700 REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.24900 REMARK 200 FOR SHELL : 2.580 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2ZAK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2M SODIUM MALONATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 199.26667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 99.63333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 149.45000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 49.81667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 249.08333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 GLU A 154 REMARK 465 LYS A 155 REMARK 465 GLY A 156 REMARK 465 ALA A 157 REMARK 465 GLN A 158 REMARK 465 LYS A 159 REMARK 465 THR A 160 REMARK 465 ASP A 161 REMARK 465 CYS A 162 REMARK 465 GLN A 163 REMARK 465 LYS A 164 REMARK 465 ASN A 165 REMARK 465 GLU B 154 REMARK 465 LYS B 155 REMARK 465 GLY B 156 REMARK 465 ALA B 157 REMARK 465 GLN B 158 REMARK 465 LYS B 159 REMARK 465 THR B 160 REMARK 465 ASP B 161 REMARK 465 CYS B 162 REMARK 465 GLN B 163 REMARK 465 LYS B 164 REMARK 465 ASN B 165 REMARK 465 LEU B 166 REMARK 465 GLY B 167 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 166 CG CD1 CD2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 PHE A 236 N CA C O CB CG CD1 REMARK 480 PHE A 236 CD2 CE1 CE2 CZ REMARK 480 ILE B 189 CA CB CG1 CG2 CD1 REMARK 480 PHE B 236 N CA C O CB CG CD1 REMARK 480 PHE B 236 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 611 O HOH B 616 2.07 REMARK 500 ND1 HIS A 221 OG SER A 224 2.13 REMARK 500 OG SER B 224 O HOH B 548 2.17 REMARK 500 OH TYR A 35 O HOH A 523 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 59 -6.58 -59.79 REMARK 500 ALA A 63 140.90 -177.59 REMARK 500 ASN A 70 -163.19 -78.62 REMARK 500 ASP A 119 -113.70 44.19 REMARK 500 ALA A 205 -73.40 -96.32 REMARK 500 ILE A 213 -53.12 -135.83 REMARK 500 MET A 283 107.78 -164.54 REMARK 500 ASP A 290 28.47 44.53 REMARK 500 ILE A 297 -37.44 -131.81 REMARK 500 THR B 71 -18.61 -45.23 REMARK 500 ASP B 119 -107.61 36.91 REMARK 500 ILE B 213 -74.80 -133.01 REMARK 500 ILE B 297 -61.96 -135.94 REMARK 500 ASP B 300 -13.80 80.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 55 O REMARK 620 2 GLU A 56 O 81.2 REMARK 620 3 ASP A 58 O 79.7 105.9 REMARK 620 4 PHE A 61 O 111.1 158.3 94.1 REMARK 620 5 ALA A 63 O 101.1 76.0 178.0 83.9 REMARK 620 6 CYS A 65 O 155.9 82.5 87.9 90.2 92.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 55 O REMARK 620 2 GLU B 56 O 81.2 REMARK 620 3 ASP B 58 O 78.2 105.1 REMARK 620 4 PHE B 61 O 110.5 155.9 98.0 REMARK 620 5 ALA B 63 O 110.8 78.9 170.8 77.2 REMARK 620 6 CYS B 65 O 157.2 82.8 90.5 90.5 81.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PVQ RELATED DB: PDB REMARK 900 RELATED ID: 4PVR RELATED DB: PDB REMARK 900 RELATED ID: 4PVS RELATED DB: PDB DBREF 4PVP A 1 308 UNP Q7L266 ASGL1_HUMAN 1 308 DBREF 4PVP B 1 308 UNP Q7L266 ASGL1_HUMAN 1 308 SEQADV 4PVP GLY A -1 UNP Q7L266 EXPRESSION TAG SEQADV 4PVP HIS A 0 UNP Q7L266 EXPRESSION TAG SEQADV 4PVP GLY B -1 UNP Q7L266 EXPRESSION TAG SEQADV 4PVP HIS B 0 UNP Q7L266 EXPRESSION TAG SEQRES 1 A 310 GLY HIS MET ASN PRO ILE VAL VAL VAL HIS GLY GLY GLY SEQRES 2 A 310 ALA GLY PRO ILE SER LYS ASP ARG LYS GLU ARG VAL HIS SEQRES 3 A 310 GLN GLY MET VAL ARG ALA ALA THR VAL GLY TYR GLY ILE SEQRES 4 A 310 LEU ARG GLU GLY GLY SER ALA VAL ASP ALA VAL GLU GLY SEQRES 5 A 310 ALA VAL VAL ALA LEU GLU ASP ASP PRO GLU PHE ASN ALA SEQRES 6 A 310 GLY CYS GLY SER VAL LEU ASN THR ASN GLY GLU VAL GLU SEQRES 7 A 310 MET ASP ALA SER ILE MET ASP GLY LYS ASP LEU SER ALA SEQRES 8 A 310 GLY ALA VAL SER ALA VAL GLN CYS ILE ALA ASN PRO ILE SEQRES 9 A 310 LYS LEU ALA ARG LEU VAL MET GLU LYS THR PRO HIS CYS SEQRES 10 A 310 PHE LEU THR ASP GLN GLY ALA ALA GLN PHE ALA ALA ALA SEQRES 11 A 310 MET GLY VAL PRO GLU ILE PRO GLY GLU LYS LEU VAL THR SEQRES 12 A 310 GLU ARG ASN LYS LYS ARG LEU GLU LYS GLU LYS HIS GLU SEQRES 13 A 310 LYS GLY ALA GLN LYS THR ASP CYS GLN LYS ASN LEU GLY SEQRES 14 A 310 THR VAL GLY ALA VAL ALA LEU ASP CYS LYS GLY ASN VAL SEQRES 15 A 310 ALA TYR ALA THR SER THR GLY GLY ILE VAL ASN LYS MET SEQRES 16 A 310 VAL GLY ARG VAL GLY ASP SER PRO CYS LEU GLY ALA GLY SEQRES 17 A 310 GLY TYR ALA ASP ASN ASP ILE GLY ALA VAL SER THR THR SEQRES 18 A 310 GLY HIS GLY GLU SER ILE LEU LYS VAL ASN LEU ALA ARG SEQRES 19 A 310 LEU THR LEU PHE HIS ILE GLU GLN GLY LYS THR VAL GLU SEQRES 20 A 310 GLU ALA ALA ASP LEU SER LEU GLY TYR MET LYS SER ARG SEQRES 21 A 310 VAL LYS GLY LEU GLY GLY LEU ILE VAL VAL SER LYS THR SEQRES 22 A 310 GLY ASP TRP VAL ALA LYS TRP THR SER THR SER MET PRO SEQRES 23 A 310 TRP ALA ALA ALA LYS ASP GLY LYS LEU HIS PHE GLY ILE SEQRES 24 A 310 ASP PRO ASP ASP THR THR ILE THR ASP LEU PRO SEQRES 1 B 310 GLY HIS MET ASN PRO ILE VAL VAL VAL HIS GLY GLY GLY SEQRES 2 B 310 ALA GLY PRO ILE SER LYS ASP ARG LYS GLU ARG VAL HIS SEQRES 3 B 310 GLN GLY MET VAL ARG ALA ALA THR VAL GLY TYR GLY ILE SEQRES 4 B 310 LEU ARG GLU GLY GLY SER ALA VAL ASP ALA VAL GLU GLY SEQRES 5 B 310 ALA VAL VAL ALA LEU GLU ASP ASP PRO GLU PHE ASN ALA SEQRES 6 B 310 GLY CYS GLY SER VAL LEU ASN THR ASN GLY GLU VAL GLU SEQRES 7 B 310 MET ASP ALA SER ILE MET ASP GLY LYS ASP LEU SER ALA SEQRES 8 B 310 GLY ALA VAL SER ALA VAL GLN CYS ILE ALA ASN PRO ILE SEQRES 9 B 310 LYS LEU ALA ARG LEU VAL MET GLU LYS THR PRO HIS CYS SEQRES 10 B 310 PHE LEU THR ASP GLN GLY ALA ALA GLN PHE ALA ALA ALA SEQRES 11 B 310 MET GLY VAL PRO GLU ILE PRO GLY GLU LYS LEU VAL THR SEQRES 12 B 310 GLU ARG ASN LYS LYS ARG LEU GLU LYS GLU LYS HIS GLU SEQRES 13 B 310 LYS GLY ALA GLN LYS THR ASP CYS GLN LYS ASN LEU GLY SEQRES 14 B 310 THR VAL GLY ALA VAL ALA LEU ASP CYS LYS GLY ASN VAL SEQRES 15 B 310 ALA TYR ALA THR SER THR GLY GLY ILE VAL ASN LYS MET SEQRES 16 B 310 VAL GLY ARG VAL GLY ASP SER PRO CYS LEU GLY ALA GLY SEQRES 17 B 310 GLY TYR ALA ASP ASN ASP ILE GLY ALA VAL SER THR THR SEQRES 18 B 310 GLY HIS GLY GLU SER ILE LEU LYS VAL ASN LEU ALA ARG SEQRES 19 B 310 LEU THR LEU PHE HIS ILE GLU GLN GLY LYS THR VAL GLU SEQRES 20 B 310 GLU ALA ALA ASP LEU SER LEU GLY TYR MET LYS SER ARG SEQRES 21 B 310 VAL LYS GLY LEU GLY GLY LEU ILE VAL VAL SER LYS THR SEQRES 22 B 310 GLY ASP TRP VAL ALA LYS TRP THR SER THR SER MET PRO SEQRES 23 B 310 TRP ALA ALA ALA LYS ASP GLY LYS LEU HIS PHE GLY ILE SEQRES 24 B 310 ASP PRO ASP ASP THR THR ILE THR ASP LEU PRO HET MLI A 401 7 HET NA A 402 1 HET NA B 401 1 HETNAM MLI MALONATE ION HETNAM NA SODIUM ION FORMUL 3 MLI C3 H2 O4 2- FORMUL 4 NA 2(NA 1+) FORMUL 6 HOH *251(H2 O) HELIX 1 1 SER A 16 ARG A 39 1 24 HELIX 2 2 SER A 43 ASP A 58 1 16 HELIX 3 3 ASN A 100 THR A 112 1 13 HELIX 4 4 ASP A 119 MET A 129 1 11 HELIX 5 5 PRO A 135 LEU A 139 5 5 HELIX 6 6 THR A 141 LYS A 152 1 12 HELIX 7 7 HIS A 221 ASN A 229 1 9 HELIX 8 8 ASN A 229 GLN A 240 1 12 HELIX 9 9 THR A 243 LYS A 260 1 18 HELIX 10 10 SER B 16 GLU B 40 1 25 HELIX 11 11 SER B 43 ASP B 58 1 16 HELIX 12 12 ASN B 100 THR B 112 1 13 HELIX 13 13 ASP B 119 GLY B 130 1 12 HELIX 14 14 THR B 141 HIS B 153 1 13 HELIX 15 15 HIS B 221 ASN B 229 1 9 HELIX 16 16 ASN B 229 GLN B 240 1 12 HELIX 17 17 THR B 243 LYS B 260 1 18 SHEET 1 A 9 LEU A 117 THR A 118 0 SHEET 2 A 9 SER A 88 VAL A 95 1 N ALA A 91 O LEU A 117 SHEET 3 A 9 MET A 77 ASP A 83 -1 N ASP A 83 O SER A 88 SHEET 4 A 9 VAL A 180 THR A 186 -1 O THR A 184 N SER A 80 SHEET 5 A 9 VAL A 169 LEU A 174 -1 N VAL A 169 O SER A 185 SHEET 6 A 9 ILE A 4 HIS A 8 -1 N HIS A 8 O GLY A 170 SHEET 7 A 9 TRP A 285 LYS A 289 -1 O ALA A 286 N VAL A 7 SHEET 8 A 9 LYS A 292 GLY A 296 -1 O HIS A 294 N ALA A 287 SHEET 9 A 9 THR A 303 ASP A 306 -1 O THR A 305 N LEU A 293 SHEET 1 B 4 GLY A 207 ASP A 210 0 SHEET 2 B 4 GLY A 214 GLY A 220 -1 O VAL A 216 N TYR A 208 SHEET 3 B 4 GLY A 263 SER A 269 -1 O VAL A 268 N ALA A 215 SHEET 4 B 4 TRP A 274 TRP A 278 -1 O LYS A 277 N LEU A 265 SHEET 1 C 9 PHE B 116 THR B 118 0 SHEET 2 C 9 ALA B 89 VAL B 95 1 N ALA B 91 O LEU B 117 SHEET 3 C 9 MET B 77 ASP B 83 -1 N ILE B 81 O GLY B 90 SHEET 4 C 9 VAL B 180 THR B 186 -1 O THR B 186 N ASP B 78 SHEET 5 C 9 VAL B 169 LEU B 174 -1 N VAL B 169 O SER B 185 SHEET 6 C 9 ILE B 4 HIS B 8 -1 N VAL B 6 O VAL B 172 SHEET 7 C 9 TRP B 285 LYS B 289 -1 O ALA B 286 N VAL B 7 SHEET 8 C 9 LYS B 292 GLY B 296 -1 O HIS B 294 N ALA B 287 SHEET 9 C 9 THR B 303 ASP B 306 -1 O THR B 305 N LEU B 293 SHEET 1 D 4 GLY B 207 ASP B 210 0 SHEET 2 D 4 GLY B 214 GLY B 220 -1 O GLY B 214 N ASP B 210 SHEET 3 D 4 GLY B 263 SER B 269 -1 O GLY B 264 N THR B 219 SHEET 4 D 4 TRP B 274 TRP B 278 -1 O LYS B 277 N LEU B 265 LINK O LEU A 55 NA NA A 402 1555 1555 2.66 LINK O GLU A 56 NA NA A 402 1555 1555 2.54 LINK O ASP A 58 NA NA A 402 1555 1555 2.36 LINK O PHE A 61 NA NA A 402 1555 1555 2.79 LINK O ALA A 63 NA NA A 402 1555 1555 2.30 LINK O CYS A 65 NA NA A 402 1555 1555 2.41 LINK O LEU B 55 NA NA B 401 1555 1555 2.48 LINK O GLU B 56 NA NA B 401 1555 1555 2.78 LINK O ASP B 58 NA NA B 401 1555 1555 2.36 LINK O PHE B 61 NA NA B 401 1555 1555 2.58 LINK O ALA B 63 NA NA B 401 1555 1555 2.40 LINK O CYS B 65 NA NA B 401 1555 1555 2.21 SITE 1 AC1 10 THR A 168 THR A 186 GLY A 188 ARG A 196 SITE 2 AC1 10 ASP A 199 SER A 200 GLY A 220 GLY A 222 SITE 3 AC1 10 HOH A 506 HOH A 621 SITE 1 AC2 6 LEU A 55 GLU A 56 ASP A 58 PHE A 61 SITE 2 AC2 6 ALA A 63 CYS A 65 SITE 1 AC3 6 LEU B 55 GLU B 56 ASP B 58 PHE B 61 SITE 2 AC3 6 ALA B 63 CYS B 65 CRYST1 59.459 59.459 298.900 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016818 0.009710 0.000000 0.00000 SCALE2 0.000000 0.019420 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003346 0.00000