HEADER OXIDOREDUCTASE/ELECTRON TRANSPORT 19-MAR-14 4PW9 TITLE CRYSTAL STRUCTURE OF THE ELECTRON-TRANSFER COMPLEX FORMED BETWEEN A TITLE 2 SULFITE DEHYDROGENASE AND A C-TYPE CYTOCHROME FROM SINORHIZOBIUM TITLE 3 MELILOTI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SULFITE OXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.8.3.1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PUTATIVE CYTOCHROME C; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SINORHIZOBIUM MELILOTI; SOURCE 3 ORGANISM_COMMON: ENSIFER MELILOTI; SOURCE 4 ORGANISM_TAXID: 266834; SOURCE 5 STRAIN: 1021; SOURCE 6 GENE: R02832, SMC04049; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: TP1000; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PPROEXSMC4049; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: SINORHIZOBIUM MELILOTI; SOURCE 14 ORGANISM_COMMON: ENSIFER MELILOTI; SOURCE 15 ORGANISM_TAXID: 266834; SOURCE 16 STRAIN: 1021; SOURCE 17 GENE: R02831, SMC04048; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PET-SMC04048TAG KEYWDS SULFITE OXIDASE, SULFITE DEHYDROGENASE, MOLYBDOPTERIN, KEYWDS 2 OXIDOREDUCTASE, ELECTRON TRANSPORT, ELECTRON TRANSFER, ELECTRON- KEYWDS 3 TRANSFER COMPLEX, C-TYPE CYTOCHROME, HEME, OXIDOREDUCTASE-ELECTRON KEYWDS 4 TRANSPORT COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.P.MCGRATH,M.J.MAHER REVDAT 4 20-SEP-23 4PW9 1 REMARK SEQADV LINK REVDAT 3 15-FEB-17 4PW9 1 JRNL REVDAT 2 17-FEB-16 4PW9 1 JRNL REVDAT 1 03-JUN-15 4PW9 0 JRNL AUTH A.P.MCGRATH,E.L.LAMING,G.P.CASAS GARCIA,M.KVANSAKUL, JRNL AUTH 2 J.M.GUSS,J.TREWHELLA,B.CALMES,P.V.BERNHARDT,G.R.HANSON, JRNL AUTH 3 U.KAPPLER,M.J.MAHER JRNL TITL STRUCTURAL BASIS OF INTERPROTEIN ELECTRON TRANSFER IN JRNL TITL 2 BACTERIAL SULFITE OXIDATION. JRNL REF ELIFE V. 4 09066 2015 JRNL REFN ESSN 2050-084X JRNL PMID 26687009 JRNL DOI 10.7554/ELIFE.09066 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 18741 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 960 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1252 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3290 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 63 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.48000 REMARK 3 B22 (A**2) : -4.10000 REMARK 3 B33 (A**2) : 6.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.492 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.291 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.237 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.912 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3438 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2204 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4711 ; 1.412 ; 2.008 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5408 ; 0.881 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 444 ; 6.372 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;37.938 ;24.924 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 512 ;15.258 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;16.343 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 531 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3891 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 632 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2210 ; 0.548 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 909 ; 0.089 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3536 ; 1.053 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1228 ; 1.681 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1175 ; 2.838 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 4PW9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000085297. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954 REMARK 200 MONOCHROMATOR : SI VORTEX ES REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18883 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.76600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4PW3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM FORMATE, 0.1M BIS-TRIS REMARK 280 PROPANE PH 7.5, 20% PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 54.79150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.90750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 54.79150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.90750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 31 REMARK 465 LYS A 32 REMARK 465 GLU A 33 REMARK 465 THR A 34 REMARK 465 LYS A 35 REMARK 465 PRO A 36 REMARK 465 MET B 27 REMARK 465 GLU B 28 REMARK 465 ALA B 112 REMARK 465 LYS B 113 REMARK 465 ASN B 114 REMARK 465 SER B 115 REMARK 465 SER B 116 REMARK 465 SER B 117 REMARK 465 VAL B 118 REMARK 465 ASP B 119 REMARK 465 LYS B 120 REMARK 465 LEU B 121 REMARK 465 ALA B 122 REMARK 465 ALA B 123 REMARK 465 ALA B 124 REMARK 465 LEU B 125 REMARK 465 GLU B 126 REMARK 465 HIS B 127 REMARK 465 HIS B 128 REMARK 465 HIS B 129 REMARK 465 HIS B 130 REMARK 465 HIS B 131 REMARK 465 HIS B 132 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 SER A 128 OG REMARK 470 LYS A 144 CG CD CE NZ REMARK 470 LEU A 194 CG CD1 CD2 REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 GLU B 29 CG CD OE1 OE2 REMARK 470 ASP B 30 CG OD1 OD2 REMARK 470 LYS B 31 CG CD CE NZ REMARK 470 LEU B 34 CG CD1 CD2 REMARK 470 GLU B 37 CG CD OE1 OE2 REMARK 470 ARG B 42 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 68 CG CD OE1 OE2 REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 ILE B 92 CG1 CG2 CD1 REMARK 470 LEU B 93 CG CD1 CD2 REMARK 470 GLU B 96 CG CD OE1 OE2 REMARK 470 LYS B 111 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 MOM1 MSS A 401 O HOH A 558 2.02 REMARK 500 NZ LYS A 261 OG1 THR A 265 2.17 REMARK 500 OG SER A 277 OD2 ASP A 279 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 68 -65.49 78.65 REMARK 500 VAL A 81 -167.47 -128.66 REMARK 500 GLN A 143 120.23 -36.80 REMARK 500 THR A 151 -82.98 -105.37 REMARK 500 ALA A 154 58.53 -96.13 REMARK 500 ILE A 207 -6.16 -57.74 REMARK 500 TRP A 284 -109.41 -107.57 REMARK 500 GLU A 297 -59.07 -149.23 REMARK 500 ASN A 387 23.60 -140.92 REMARK 500 LYS B 70 55.56 30.55 REMARK 500 GLU B 91 -33.92 -142.78 REMARK 500 ILE B 92 60.98 -108.33 REMARK 500 LEU B 93 128.17 -175.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MSS A 401 MOM1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 127 SG REMARK 620 2 MSS A 401 S1' 151.9 REMARK 620 3 MSS A 401 S2' 103.6 80.7 REMARK 620 4 MSS A 401 OM1 97.8 107.1 109.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 51 NE2 REMARK 620 2 HEC B 201 NA 86.9 REMARK 620 3 HEC B 201 NB 81.8 88.9 REMARK 620 4 HEC B 201 NC 90.3 177.0 89.9 REMARK 620 5 HEC B 201 ND 96.8 92.6 177.9 88.5 REMARK 620 6 MET B 87 SD 165.8 85.9 85.8 96.7 95.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MSS A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PWA RELATED DB: PDB REMARK 900 RELATED ID: 4PW3 RELATED DB: PDB DBREF 4PW9 A 32 399 UNP Q92M24 Q92M24_RHIME 32 399 DBREF 4PW9 B 28 113 UNP Q92M25 Q92M25_RHIME 28 113 SEQADV 4PW9 SER A 31 UNP Q92M24 EXPRESSION TAG SEQADV 4PW9 MET B 27 UNP Q92M25 EXPRESSION TAG SEQADV 4PW9 ASN B 114 UNP Q92M25 EXPRESSION TAG SEQADV 4PW9 SER B 115 UNP Q92M25 EXPRESSION TAG SEQADV 4PW9 SER B 116 UNP Q92M25 EXPRESSION TAG SEQADV 4PW9 SER B 117 UNP Q92M25 EXPRESSION TAG SEQADV 4PW9 VAL B 118 UNP Q92M25 EXPRESSION TAG SEQADV 4PW9 ASP B 119 UNP Q92M25 EXPRESSION TAG SEQADV 4PW9 LYS B 120 UNP Q92M25 EXPRESSION TAG SEQADV 4PW9 LEU B 121 UNP Q92M25 EXPRESSION TAG SEQADV 4PW9 ALA B 122 UNP Q92M25 EXPRESSION TAG SEQADV 4PW9 ALA B 123 UNP Q92M25 EXPRESSION TAG SEQADV 4PW9 ALA B 124 UNP Q92M25 EXPRESSION TAG SEQADV 4PW9 LEU B 125 UNP Q92M25 EXPRESSION TAG SEQADV 4PW9 GLU B 126 UNP Q92M25 EXPRESSION TAG SEQADV 4PW9 HIS B 127 UNP Q92M25 EXPRESSION TAG SEQADV 4PW9 HIS B 128 UNP Q92M25 EXPRESSION TAG SEQADV 4PW9 HIS B 129 UNP Q92M25 EXPRESSION TAG SEQADV 4PW9 HIS B 130 UNP Q92M25 EXPRESSION TAG SEQADV 4PW9 HIS B 131 UNP Q92M25 EXPRESSION TAG SEQADV 4PW9 HIS B 132 UNP Q92M25 EXPRESSION TAG SEQRES 1 A 369 SER LYS GLU THR LYS PRO LEU PRO ASP TYR VAL ALA TRP SEQRES 2 A 369 LYS ASP ALA ASP ALA LEU ILE VAL HIS SER ASP LYS THR SEQRES 3 A 369 LEU GLU THR LYS ARG SER GLU PHE GLY THR SER ILE ILE SEQRES 4 A 369 THR PRO GLU GLU LYS LEU TYR ILE ARG ASN ASN VAL ASN SEQRES 5 A 369 THR PRO PRO GLU SER ILE LEU ALA ASP ARG ASP GLY TRP SEQRES 6 A 369 LYS VAL GLU ILE SER GLY VAL LYS GLU PRO ARG THR LEU SEQRES 7 A 369 THR VAL ALA GLU LEU LYS THR LEU GLY LEU VAL THR ALA SEQRES 8 A 369 ALA THR VAL LEU GLN CYS SER GLY ASN GLY ARG LYS TYR SEQRES 9 A 369 PHE LYS ASP GLN LEU THR GLY ASP GLN LYS MET SER GLY SEQRES 10 A 369 THR PRO TRP THR VAL GLY ALA ALA GLY CYS VAL ILE TRP SEQRES 11 A 369 SER GLY VAL PRO LEU LYS ALA VAL VAL ASP ALA LEU GLY SEQRES 12 A 369 GLY PRO ALA GLU GLY ALA ARG PHE ILE THR GLY THR GLY SEQRES 13 A 369 GLY GLU GLU LEU PRO ALA GLY LEU ASP PRO LYS LEU LEU SEQRES 14 A 369 VAL VAL GLU ARG SER VAL PRO ILE SER ASN LEU ASP ASN SEQRES 15 A 369 VAL ILE LEU ALA TRP GLU MET ASN GLY ARG PRO LEU SER SEQRES 16 A 369 LEU ALA HIS GLY GLY PRO LEU ARG MET VAL VAL PRO GLY SEQRES 17 A 369 TYR SER GLY VAL ASN ASN ILE LYS TYR VAL LYS ALA VAL SEQRES 18 A 369 ALA MET THR GLU VAL GLU THR ASP ALA LYS ILE GLN LYS SEQRES 19 A 369 THR SER TYR ARG VAL HIS ALA LEU GLY GLU LYS GLY SER SEQRES 20 A 369 PRO ASP GLN PRO SER VAL TRP GLU GLN PRO VAL LYS SER SEQRES 21 A 369 TRP ILE THR THR PRO HIS GLU ALA ALA LYS ALA GLY GLN SEQRES 22 A 369 VAL GLN ILE ALA GLY VAL ALA PHE GLY GLY MET ASN ALA SEQRES 23 A 369 CYS LYS SER VAL GLU VAL SER VAL ASP GLY GLY GLN THR SEQRES 24 A 369 TRP GLN GLU ALA GLU PHE ILE GLY PRO ASP LEU GLY ARG SEQRES 25 A 369 PHE ALA TRP ARG VAL PHE ALA LEU SER ALA ASP LEU ALA SEQRES 26 A 369 ARG GLY THR TYR THR LEU VAL SER ARG ALA THR ASP THR SEQRES 27 A 369 GLU GLY ASN VAL GLN PRO GLU GLU THR GLU MET ASN GLY SEQRES 28 A 369 ALA GLY TYR GLY HIS ASN GLY TRP ARG ALA PRO ALA VAL SEQRES 29 A 369 LYS LEU THR VAL ALA SEQRES 1 B 106 MET GLU GLU ASP LYS LEU ALA LEU GLY ARG GLU ILE PHE SEQRES 2 B 106 LEU GLU ARG SER GLU PRO GLN CYS ALA LEU CYS HIS THR SEQRES 3 B 106 LEU ALA ASP ALA GLU ALA VAL GLY GLU VAL GLY PRO ASN SEQRES 4 B 106 LEU ASP GLU LEU LYS PRO ASP ALA GLU ARG VAL ASN THR SEQRES 5 B 106 ALA VAL THR ASN GLY ILE GLY PRO MET PRO ALA ASN GLU SEQRES 6 B 106 ILE LEU THR ASP GLU GLU ILE GLU ALA VAL ALA LEU TYR SEQRES 7 B 106 VAL SER THR VAL ALA GLY LYS ALA LYS ASN SER SER SER SEQRES 8 B 106 VAL ASP LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 9 B 106 HIS HIS HET MSS A 401 26 HET HEC B 201 43 HETNAM MSS (MOLYBDOPTERIN-S,S)-OXO-MOLYBDENUM HETNAM HEC HEME C FORMUL 3 MSS C10 H12 MO N5 O7 P S2 FORMUL 4 HEC C34 H34 FE N4 O4 FORMUL 5 HOH *63(H2 O) HELIX 1 1 PRO A 38 ALA A 42 5 5 HELIX 2 2 ASP A 45 ASP A 47 5 3 HELIX 3 3 ARG A 61 PHE A 64 5 4 HELIX 4 4 PRO A 71 LEU A 75 5 5 HELIX 5 5 PRO A 85 ALA A 90 5 6 HELIX 6 6 ASP A 91 GLY A 94 5 4 HELIX 7 7 VAL A 110 GLY A 117 1 8 HELIX 8 8 GLY A 131 GLN A 138 1 8 HELIX 9 9 LEU A 165 LEU A 172 1 8 HELIX 10 10 ASP A 195 VAL A 200 1 6 HELIX 11 11 SER A 208 LEU A 210 5 3 HELIX 12 12 SER A 240 ASN A 244 5 5 HELIX 13 13 ALA A 260 THR A 265 1 6 HELIX 14 14 ASP B 30 GLU B 41 1 12 HELIX 15 15 GLN B 46 HIS B 51 1 6 HELIX 16 16 ALA B 54 GLU B 57 5 4 HELIX 17 17 ASN B 65 LYS B 70 1 6 HELIX 18 18 ASP B 72 GLY B 83 1 12 HELIX 19 19 THR B 94 ALA B 109 1 16 SHEET 1 A 3 LEU A 49 SER A 53 0 SHEET 2 A 3 THR A 56 THR A 59 -1 O GLU A 58 N ILE A 50 SHEET 3 A 3 ILE A 77 ARG A 78 -1 O ILE A 77 N LEU A 57 SHEET 1 B 5 ARG A 106 THR A 109 0 SHEET 2 B 5 LYS A 96 SER A 100 -1 N VAL A 97 O LEU A 108 SHEET 3 B 5 VAL A 248 THR A 254 1 O VAL A 251 N GLU A 98 SHEET 4 B 5 PHE A 181 GLY A 186 -1 N THR A 183 O ALA A 252 SHEET 5 B 5 GLU A 202 PRO A 206 -1 O VAL A 205 N ILE A 182 SHEET 1 C 4 VAL A 119 GLN A 126 0 SHEET 2 C 4 ALA A 155 PRO A 164 -1 O TRP A 160 N ALA A 121 SHEET 3 C 4 ILE A 214 MET A 219 -1 O GLU A 218 N SER A 161 SHEET 4 C 4 ARG A 222 PRO A 223 -1 O ARG A 222 N MET A 219 SHEET 1 D 4 VAL A 119 GLN A 126 0 SHEET 2 D 4 ALA A 155 PRO A 164 -1 O TRP A 160 N ALA A 121 SHEET 3 D 4 ILE A 214 MET A 219 -1 O GLU A 218 N SER A 161 SHEET 4 D 4 ARG A 233 VAL A 235 -1 O VAL A 235 N ILE A 214 SHEET 1 E 4 LYS A 289 THR A 294 0 SHEET 2 E 4 GLY A 302 PHE A 311 -1 O ALA A 307 N THR A 294 SHEET 3 E 4 ARG A 346 LEU A 354 -1 O LEU A 354 N GLY A 302 SHEET 4 E 4 GLU A 334 ILE A 336 -1 N ILE A 336 O VAL A 347 SHEET 1 F 5 ALA A 298 ALA A 299 0 SHEET 2 F 5 VAL A 394 VAL A 398 1 O THR A 397 N ALA A 299 SHEET 3 F 5 GLY A 357 ASP A 367 -1 N TYR A 359 O LEU A 396 SHEET 4 F 5 CYS A 317 SER A 323 -1 N LYS A 318 O THR A 366 SHEET 5 F 5 GLN A 331 GLU A 332 -1 O GLN A 331 N VAL A 322 SHEET 1 G 2 THR B 52 LEU B 53 0 SHEET 2 G 2 ALA B 58 VAL B 59 -1 O ALA B 58 N LEU B 53 LINK SG CYS B 47 CAB HEC B 201 1555 1555 1.63 LINK SG CYS B 50 CAC HEC B 201 1555 1555 1.66 LINK SG CYS A 127 MOM1 MSS A 401 1555 1555 2.31 LINK NE2 HIS B 51 FE HEC B 201 1555 1555 2.02 LINK SD MET B 87 FE HEC B 201 1555 1555 2.14 CISPEP 1 GLY A 230 PRO A 231 0 9.82 CISPEP 2 THR A 294 PRO A 295 0 -2.65 CISPEP 3 GLU B 44 PRO B 45 0 -8.90 SITE 1 AC1 20 TYR A 76 ILE A 77 ARG A 78 ASN A 79 SITE 2 AC1 20 ASN A 80 LEU A 125 CYS A 127 SER A 128 SITE 3 AC1 20 GLY A 186 GLU A 188 VAL A 201 HIS A 228 SITE 4 AC1 20 ARG A 233 GLY A 241 VAL A 242 ASN A 244 SITE 5 AC1 20 LYS A 246 TYR A 247 TYR A 267 HOH A 558 SITE 1 AC2 18 ARG A 78 ASN A 80 SER A 146 GLY A 147 SITE 2 AC2 18 PRO B 45 GLN B 46 CYS B 47 CYS B 50 SITE 3 AC2 18 HIS B 51 GLY B 63 PRO B 64 LEU B 69 SITE 4 AC2 18 ARG B 75 ALA B 79 VAL B 80 ILE B 84 SITE 5 AC2 18 PRO B 86 MET B 87 CRYST1 109.583 95.815 49.906 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009126 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010437 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020038 0.00000