HEADER OXIDOREDUCTASE 19-MAR-14 4PWB TITLE PHL P 4 I153V VARIANT, A GLUCOSE OXIDASE, PRESSURIZED WITH XENON COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLLEN ALLERGEN PHL P 4.0202; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PHL P 4.0202; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHLEUM PRATENSE; SOURCE 3 ORGANISM_COMMON: TIMOTHY; SOURCE 4 ORGANISM_TAXID: 15957; SOURCE 5 GENE: PHLP4; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: PICHIA PASTORIS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS FLAVOPROTEIN, BI-COVALENT FLAVINYLATION, OXIDOREDUCTASE, ALLERGEN, KEYWDS 2 GLUCOSE OXIDASE, HIGH OXYGEN REACTIVITY, GRASS POLLEN EXPDTA X-RAY DIFFRACTION AUTHOR D.ZAFRED,W.KELLER,P.MACHEROUX REVDAT 7 20-SEP-23 4PWB 1 REMARK SEQADV LINK REVDAT 6 02-SEP-15 4PWB 1 JRNL REVDAT 5 22-APR-15 4PWB 1 REMARK REVDAT 4 01-APR-15 4PWB 1 TITLE REVDAT 3 25-MAR-15 4PWB 1 JRNL REVDAT 2 04-MAR-15 4PWB 1 JRNL REVDAT 1 02-APR-14 4PWB 0 JRNL AUTH D.ZAFRED,B.STEINER,A.R.TEUFELBERGER,A.HROMIC,P.A.KARPLUS, JRNL AUTH 2 C.J.SCHOFIELD,S.WALLNER,P.MACHEROUX JRNL TITL RATIONALLY ENGINEERED FLAVIN-DEPENDENT OXIDASE REVEALS JRNL TITL 2 STERIC CONTROL OF DIOXYGEN REDUCTION. JRNL REF FEBS J. V. 282 3060 2015 JRNL REFN ISSN 1742-464X JRNL PMID 25619330 JRNL DOI 10.1111/FEBS.13212 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 123808 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3294 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.4239 - 5.9005 1.00 3918 205 0.1508 0.1468 REMARK 3 2 5.9005 - 4.6846 1.00 3923 214 0.1173 0.1253 REMARK 3 3 4.6846 - 4.0927 1.00 3926 208 0.1014 0.1181 REMARK 3 4 4.0927 - 3.7187 1.00 3922 205 0.1220 0.1591 REMARK 3 5 3.7187 - 3.4522 1.00 3892 209 0.1358 0.1624 REMARK 3 6 3.4522 - 3.2487 1.00 3954 210 0.1452 0.1687 REMARK 3 7 3.2487 - 3.0860 1.00 3900 210 0.1506 0.1947 REMARK 3 8 3.0860 - 2.9517 1.00 3922 208 0.1551 0.2109 REMARK 3 9 2.9517 - 2.8381 1.00 3938 205 0.1513 0.1923 REMARK 3 10 2.8381 - 2.7402 1.00 3915 209 0.1598 0.2017 REMARK 3 11 2.7402 - 2.6545 1.00 3915 207 0.1548 0.2020 REMARK 3 12 2.6545 - 2.5786 1.00 3910 209 0.1546 0.1987 REMARK 3 13 2.5786 - 2.5107 1.00 3912 208 0.1568 0.1953 REMARK 3 14 2.5107 - 2.4495 1.00 3894 204 0.1543 0.1767 REMARK 3 15 2.4495 - 2.3938 1.00 3944 208 0.1563 0.1820 REMARK 3 16 2.3938 - 2.3429 1.00 3922 209 0.1619 0.1918 REMARK 3 17 2.3429 - 2.2960 1.00 3923 206 0.1638 0.1983 REMARK 3 18 2.2960 - 2.2527 1.00 3925 206 0.1672 0.1975 REMARK 3 19 2.2527 - 2.2124 1.00 3887 205 0.1817 0.2008 REMARK 3 20 2.2124 - 2.1749 1.00 3924 204 0.1960 0.2263 REMARK 3 21 2.1749 - 2.1399 1.00 3948 210 0.1985 0.2567 REMARK 3 22 2.1399 - 2.1069 1.00 3935 213 0.2160 0.2282 REMARK 3 23 2.1069 - 2.0759 1.00 3898 208 0.2121 0.2309 REMARK 3 24 2.0759 - 2.0467 1.00 3938 208 0.2208 0.2453 REMARK 3 25 2.0467 - 2.0190 1.00 3869 206 0.2391 0.2710 REMARK 3 26 2.0190 - 1.9928 1.00 3936 202 0.2514 0.2412 REMARK 3 27 1.9928 - 1.9679 1.00 3935 208 0.2656 0.3064 REMARK 3 28 1.9679 - 1.9442 1.00 3928 210 0.2747 0.3231 REMARK 3 29 1.9442 - 1.9216 1.00 3878 204 0.2875 0.2851 REMARK 3 30 1.9216 - 1.9000 1.00 3951 208 0.2997 0.3170 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 4102 REMARK 3 ANGLE : 1.341 5583 REMARK 3 CHIRALITY : 0.055 595 REMARK 3 PLANARITY : 0.007 712 REMARK 3 DIHEDRAL : 14.365 1509 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PWB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000085299. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.920 REMARK 200 MONOCHROMATOR : FIXED WAVELENGTH MONOCHROMATIC REMARK 200 BEAMLINE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 123815 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.270 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER MR REMARK 200 STARTING MODEL: PDB ENTRY 3TSH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7 MG/ML PROTEIN IN 20MM TRIS + 70% REMARK 280 TACSIMATE,CRYSTALS WERE SOAKED IN 55% TACSIMATE 20% GLYCEROL AND REMARK 280 PRESSURIZED WITH XENON BEFORE FREEZING, PH 7.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.65333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 135.30667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 101.48000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 169.13333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.82667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.65333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 135.30667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 169.13333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 101.48000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 33.82667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 760 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1008 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 1 REMARK 465 PHE A 2 REMARK 465 PRO A 3 REMARK 465 PRO A 4 REMARK 465 PRO A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 LYS A 8 REMARK 465 LYS A 499 REMARK 465 TYR A 500 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 956 O HOH A 998 2.16 REMARK 500 O HOH A 1037 O HOH A 1038 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 150 CB CYS A 150 SG 0.142 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 94 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 CYS A 150 CA - CB - SG ANGL. DEV. = 9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 83 -80.16 -109.64 REMARK 500 TYR A 93 -0.70 -145.93 REMARK 500 ARG A 110 23.32 -142.31 REMARK 500 ALA A 147 -162.23 -121.52 REMARK 500 GLU A 210 -51.79 76.19 REMARK 500 GLN A 267 37.99 -145.05 REMARK 500 PHE A 292 55.37 -146.92 REMARK 500 ALA A 321 57.92 -142.59 REMARK 500 LEU A 327 68.64 -117.26 REMARK 500 TYR A 374 -135.62 -103.16 REMARK 500 ALA A 376 -132.17 46.19 REMARK 500 ARG A 391 -103.03 -133.80 REMARK 500 ARG A 391 -103.79 -133.80 REMARK 500 TYR A 439 64.16 -100.71 REMARK 500 LYS A 468 -124.36 47.62 REMARK 500 ASP A 482 59.26 -159.30 REMARK 500 GLN A 491 51.04 -141.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 602 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 89 OE2 REMARK 620 2 GLU A 338 OE1 171.7 REMARK 620 3 HOH A 713 O 91.4 94.9 REMARK 620 4 HOH A 725 O 102.4 84.4 76.7 REMARK 620 5 HOH A 742 O 95.2 78.5 97.5 161.5 REMARK 620 6 HOH A1063 O 83.2 91.7 168.0 94.0 93.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 603 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 430 O REMARK 620 2 HOH A 770 O 80.5 REMARK 620 3 HOH A 940 O 90.6 91.3 REMARK 620 4 HOH A 971 O 83.4 163.5 85.5 REMARK 620 5 HOH A1037 O 96.8 92.4 172.2 92.7 REMARK 620 6 HOH A1038 O 148.8 96.5 120.6 99.0 52.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XE A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XE A 607 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PVE RELATED DB: PDB REMARK 900 WILD-TYPE PHL P 4.0202, A GLUCOSE DEHYDROGENASE REMARK 900 RELATED ID: 4PVH RELATED DB: PDB REMARK 900 PHL P 4 N158H VARIANT, A GLUCOSE DEHYDROGENASE REMARK 900 RELATED ID: 4PVJ RELATED DB: PDB REMARK 900 PHL P 4 I153V VARIANT, A GLUCOSE OXIDASE REMARK 900 RELATED ID: 4PVK RELATED DB: PDB REMARK 900 PHL P 4 I153V N158H VARIANT, A GLUCOSE OXIDASE REMARK 900 RELATED ID: 4PZF RELATED DB: PDB REMARK 900 BERBERINE BRIDGE ENZYME G164A VARIANT, A RETICULINE DEHYDROGENASE REMARK 900 RELATED ID: 4PWC RELATED DB: PDB REMARK 900 PHL P 4 I153V N158H VARIANT, A GLUCOSE OXIDASE, 3.5 M NABR SOAK DBREF 4PWB A 1 500 UNP B2ZWE9 B2ZWE9_PHLPR 1 500 SEQADV 4PWB GLN A 61 UNP B2ZWE9 ASN 61 ENGINEERED MUTATION SEQADV 4PWB VAL A 153 UNP B2ZWE9 ILE 153 ENGINEERED MUTATION SEQADV 4PWB GLN A 330 UNP B2ZWE9 ASN 330 ENGINEERED MUTATION SEQRES 1 A 500 TYR PHE PRO PRO PRO ALA ALA LYS GLU ASP PHE LEU GLY SEQRES 2 A 500 CYS LEU VAL LYS GLU ILE PRO PRO ARG LEU LEU TYR ALA SEQRES 3 A 500 LYS SER SER PRO ALA TYR PRO SER VAL LEU GLY GLN THR SEQRES 4 A 500 ILE ARG ASN SER ARG TRP SER SER PRO ASP ASN VAL LYS SEQRES 5 A 500 PRO LEU TYR ILE ILE THR PRO THR GLN VAL SER HIS ILE SEQRES 6 A 500 GLN SER ALA VAL VAL CYS GLY ARG ARG HIS THR VAL ARG SEQRES 7 A 500 ILE ARG VAL ARG SER GLY GLY HIS ASP TYR GLU GLY LEU SEQRES 8 A 500 SER TYR ARG SER LEU GLN PRO GLU THR PHE ALA VAL VAL SEQRES 9 A 500 ASP LEU ASN LYS MET ARG ALA VAL TRP VAL ASP GLY LYS SEQRES 10 A 500 ALA ARG THR ALA TRP VAL ASP SER GLY ALA GLN LEU GLY SEQRES 11 A 500 GLU LEU TYR TYR ALA ILE TYR LYS ALA SER PRO THR LEU SEQRES 12 A 500 ALA PHE PRO ALA GLY VAL CYS PRO THR VAL GLY VAL GLY SEQRES 13 A 500 GLY ASN PHE ALA GLY GLY GLY PHE GLY MET LEU LEU ARG SEQRES 14 A 500 LYS TYR GLY ILE ALA ALA GLU ASN VAL ILE ASP VAL LYS SEQRES 15 A 500 LEU VAL ASP ALA ASN GLY LYS LEU HIS ASP LYS LYS SER SEQRES 16 A 500 MET GLY ASP ASP HIS PHE TRP ALA VAL ARG GLY GLY GLY SEQRES 17 A 500 GLY GLU SER PHE GLY ILE VAL VAL ALA TRP GLN VAL LYS SEQRES 18 A 500 LEU LEU PRO VAL PRO PRO THR VAL THR ILE PHE LYS ILE SEQRES 19 A 500 SER LYS THR VAL SER GLU GLY ALA VAL ASP ILE ILE ASN SEQRES 20 A 500 LYS TRP GLN VAL VAL ALA PRO GLN LEU PRO ALA ASP LEU SEQRES 21 A 500 MET ILE ARG ILE ILE ALA GLN GLY PRO LYS ALA THR PHE SEQRES 22 A 500 GLU ALA MET TYR LEU GLY THR CYS LYS THR LEU THR PRO SEQRES 23 A 500 LEU MET SER SER LYS PHE PRO GLU LEU GLY MET ASN PRO SEQRES 24 A 500 SER HIS CYS ASN GLU MET SER TRP ILE GLN SER ILE PRO SEQRES 25 A 500 PHE VAL HIS LEU GLY HIS ARG ASP ALA LEU GLU ASP ASP SEQRES 26 A 500 LEU LEU ASN ARG GLN ASN SER PHE LYS PRO PHE ALA GLU SEQRES 27 A 500 TYR LYS SER ASP TYR VAL TYR GLN PRO PHE PRO LYS THR SEQRES 28 A 500 VAL TRP GLU GLN ILE LEU ASN THR TRP LEU VAL LYS PRO SEQRES 29 A 500 GLY ALA GLY ILE MET ILE PHE ASP PRO TYR GLY ALA THR SEQRES 30 A 500 ILE SER ALA THR PRO GLU SER ALA THR PRO PHE PRO HIS SEQRES 31 A 500 ARG LYS GLY VAL LEU PHE ASN ILE GLN TYR VAL ASN TYR SEQRES 32 A 500 TRP PHE ALA PRO GLY ALA ALA ALA ALA PRO LEU SER TRP SEQRES 33 A 500 SER LYS ASP ILE TYR ASN TYR MET GLU PRO TYR VAL SER SEQRES 34 A 500 LYS ASN PRO ARG GLN ALA TYR ALA ASN TYR ARG ASP ILE SEQRES 35 A 500 ASP LEU GLY ARG ASN GLU VAL VAL ASN ASP VAL SER THR SEQRES 36 A 500 TYR ALA SER GLY LYS VAL TRP GLY GLN LYS TYR PHE LYS SEQRES 37 A 500 GLY ASN PHE GLU ARG LEU ALA ILE THR LYS GLY LYS VAL SEQRES 38 A 500 ASP PRO THR ASP TYR PHE ARG ASN GLU GLN SER ILE PRO SEQRES 39 A 500 PRO LEU ILE LYS LYS TYR HET FAD A 601 78 HET NA A 602 1 HET NA A 603 1 HET MLI A 604 9 HET MLI A 605 9 HET XE A 606 1 HET XE A 607 1 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NA SODIUM ION HETNAM MLI MALONATE ION HETNAM XE XENON FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 NA 2(NA 1+) FORMUL 5 MLI 2(C3 H2 O4 2-) FORMUL 7 XE 2(XE) FORMUL 9 HOH *377(H2 O) HELIX 1 1 GLU A 9 ILE A 19 1 11 HELIX 2 2 PRO A 20 ARG A 22 5 3 HELIX 3 3 ALA A 31 GLN A 38 1 8 HELIX 4 4 ASN A 42 SER A 46 5 5 HELIX 5 5 GLN A 61 HIS A 75 1 15 HELIX 6 6 GLN A 128 SER A 140 1 13 HELIX 7 7 GLY A 154 GLY A 161 1 8 HELIX 8 8 LEU A 167 GLY A 172 1 6 HELIX 9 9 ILE A 173 GLU A 176 5 4 HELIX 10 10 ASP A 192 GLY A 197 1 6 HELIX 11 11 GLY A 197 ARG A 205 1 9 HELIX 12 12 GLY A 241 ALA A 253 1 13 HELIX 13 13 PRO A 254 LEU A 256 5 3 HELIX 14 14 THR A 280 PHE A 292 1 13 HELIX 15 15 PRO A 293 GLY A 296 5 4 HELIX 16 16 ASN A 298 CYS A 302 5 5 HELIX 17 17 SER A 306 GLY A 317 1 12 HELIX 18 18 ALA A 321 LEU A 327 1 7 HELIX 19 19 PRO A 349 THR A 359 1 11 HELIX 20 20 TRP A 360 LYS A 363 5 4 HELIX 21 21 GLY A 375 THR A 381 1 7 HELIX 22 22 ALA A 410 GLU A 425 1 16 HELIX 23 23 ASP A 441 GLY A 445 5 5 HELIX 24 24 THR A 455 LYS A 468 1 14 HELIX 25 25 ASN A 470 ASP A 482 1 13 SHEET 1 A 4 LEU A 24 ALA A 26 0 SHEET 2 A 4 TYR A 55 ILE A 57 -1 O ILE A 56 N TYR A 25 SHEET 3 A 4 PHE A 101 ASP A 105 1 O ASP A 105 N ILE A 57 SHEET 4 A 4 ARG A 78 ARG A 82 1 N ARG A 80 O ALA A 102 SHEET 1 B 5 VAL A 112 ASP A 115 0 SHEET 2 B 5 THR A 120 ASP A 124 -1 O THR A 120 N ASP A 115 SHEET 3 B 5 ILE A 214 LYS A 221 -1 O VAL A 220 N ALA A 121 SHEET 4 B 5 VAL A 178 VAL A 184 -1 N LYS A 182 O VAL A 216 SHEET 5 B 5 LEU A 190 HIS A 191 -1 O HIS A 191 N LEU A 183 SHEET 1 C 2 LEU A 143 ALA A 144 0 SHEET 2 C 2 LEU A 223 PRO A 224 -1 O LEU A 223 N ALA A 144 SHEET 1 D 7 ASN A 303 MET A 305 0 SHEET 2 D 7 VAL A 229 THR A 237 -1 N VAL A 229 O MET A 305 SHEET 3 D 7 LYS A 270 TYR A 277 -1 O PHE A 273 N ILE A 234 SHEET 4 D 7 LEU A 260 ALA A 266 -1 N ARG A 263 O GLU A 274 SHEET 5 D 7 ILE A 368 PRO A 373 -1 O PHE A 371 N ILE A 264 SHEET 6 D 7 PHE A 396 TRP A 404 -1 O VAL A 401 N ILE A 368 SHEET 7 D 7 PHE A 336 VAL A 344 -1 N PHE A 336 O TRP A 404 SHEET 1 E 2 VAL A 449 VAL A 450 0 SHEET 2 E 2 VAL A 453 SER A 454 -1 O VAL A 453 N VAL A 450 SSBOND 1 CYS A 14 CYS A 71 1555 1555 2.10 LINK ND1 HIS A 86 C8M FAD A 601 1555 1555 1.57 LINK SG CYS A 150 C6 FAD A 601 1555 1555 1.81 LINK OE2 GLU A 89 NA NA A 602 1555 1555 2.37 LINK OE1 GLU A 338 NA NA A 602 1555 1555 2.36 LINK O LYS A 430 NA NA A 603 1555 1555 2.26 LINK NA NA A 602 O HOH A 713 1555 1555 2.39 LINK NA NA A 602 O HOH A 725 1555 1555 2.53 LINK NA NA A 602 O HOH A 742 1555 1555 2.43 LINK NA NA A 602 O HOH A1063 1555 1555 2.48 LINK NA NA A 603 O HOH A 770 1555 1555 2.49 LINK NA NA A 603 O HOH A 940 1555 1555 2.39 LINK NA NA A 603 O HOH A 971 1555 1555 2.50 LINK NA NA A 603 O HOH A1037 1555 1555 2.48 LINK NA NA A 603 O HOH A1038 1555 1555 2.47 CISPEP 1 ASN A 431 PRO A 432 0 0.85 SITE 1 AC1 30 VAL A 81 ARG A 82 SER A 83 GLY A 84 SITE 2 AC1 30 GLY A 85 HIS A 86 ASP A 87 TYR A 88 SITE 3 AC1 30 SER A 92 LEU A 106 SER A 125 GLY A 148 SITE 4 AC1 30 VAL A 149 CYS A 150 VAL A 153 GLY A 154 SITE 5 AC1 30 GLY A 157 ASN A 158 GLY A 163 PHE A 164 SITE 6 AC1 30 GLY A 209 GLU A 210 GLY A 213 VAL A 215 SITE 7 AC1 30 TYR A 436 ASN A 438 ARG A 440 HOH A 707 SITE 8 AC1 30 HOH A1019 HOH A1033 SITE 1 AC2 6 GLU A 89 GLU A 338 HOH A 713 HOH A 725 SITE 2 AC2 6 HOH A 742 HOH A1063 SITE 1 AC3 6 LYS A 430 HOH A 770 HOH A 940 HOH A 971 SITE 2 AC3 6 HOH A1037 HOH A1038 SITE 1 AC4 8 PRO A 382 LYS A 392 TYR A 456 LYS A 460 SITE 2 AC4 8 HOH A 721 HOH A 787 HOH A 945 HOH A1070 SITE 1 AC5 3 VAL A 16 LEU A 24 SER A 29 SITE 1 AC6 1 GLN A 491 SITE 1 AC7 2 ALA A 186 PHE A 212 CRYST1 117.640 117.640 202.960 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008501 0.004908 0.000000 0.00000 SCALE2 0.000000 0.009816 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004927 0.00000