HEADER OXIDOREDUCTASE/PROTEIN BINDING 21-MAR-14 4PWV TITLE STRUCTURE OF P450SKY (CYP163B3), A CYTOCHROME P450 FROM SKYLLAMYCIN TITLE 2 BIOSYNTHESIS IN COMPLEX WITH A PEPTIDYL CARRIER PROTEIN DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: P450 MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYTOCHROME P450 SKY32 (CYP163B3); COMPND 5 EC: 1.14.14.1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PEPTIDE SYNTHETASE; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: PEPTIDYL CARRIER PROTEIN DOMAIN (UNP RESIDUES 3075-3154); COMPND 11 SYNONYM: PCP7; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP. ACTA 2897; SOURCE 3 ORGANISM_TAXID: 1001349; SOURCE 4 STRAIN: ACTA 2897; SOURCE 5 GENE: SKY32; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A(+); SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: STREPTOMYCES SP. ACTA 2897; SOURCE 13 ORGANISM_TAXID: 1001349; SOURCE 14 STRAIN: ACTA 2897; SOURCE 15 GENE: SKY30; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET28A(+) KEYWDS CYTOCHROME P450 FOLD, BETA-AMINOACYL CARRIER PROTEIN HYDROXYLASE, KEYWDS 2 PEPTIDYL CARRIER PROTEIN DOMAINS, SKYLLAMYCIN NRPS, OXIDOREDUCTASE- KEYWDS 3 PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.HASLINGER,M.J.CRYLE REVDAT 3 20-AUG-14 4PWV 1 JRNL REVDAT 2 06-AUG-14 4PWV 1 JRNL REVDAT 1 23-JUL-14 4PWV 0 JRNL AUTH K.HASLINGER,C.BRIEKE,S.UHLMANN,L.SIEVERLING,R.D.SUSSMUTH, JRNL AUTH 2 M.J.CRYLE JRNL TITL THE STRUCTURE OF A TRANSIENT COMPLEX OF A NONRIBOSOMAL JRNL TITL 2 PEPTIDE SYNTHETASE AND A CYTOCHROME P450 MONOOXYGENASE. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 53 8518 2014 JRNL REFN ISSN 1433-7851 JRNL PMID 25044735 JRNL DOI 10.1002/ANIE.201404977 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 18124 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 955 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1299 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.3210 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.4650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3817 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 71 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 77.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.12000 REMARK 3 B22 (A**2) : 1.12000 REMARK 3 B33 (A**2) : -1.68000 REMARK 3 B12 (A**2) : 0.56000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.876 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.392 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.296 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.742 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.880 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3976 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5415 ; 0.880 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 484 ; 4.771 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 190 ;32.726 ;23.684 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 639 ;14.702 ;15.023 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;12.680 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 601 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3055 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2423 ; 0.299 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3908 ; 0.562 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1553 ; 0.591 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1506 ; 1.006 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4PWV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-14. REMARK 100 THE RCSB ID CODE IS RCSB085319. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97968 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19079 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 47.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.500 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.00 REMARK 200 R MERGE FOR SHELL (I) : 0.70900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.15 M CALCIUM ACETATE, REMARK 280 0.1 M TRIS, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 112.26667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 224.53333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 168.40000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 280.66667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.13333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 112.26667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 224.53333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 280.66667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 168.40000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 56.13333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -22 REMARK 465 GLY A -21 REMARK 465 SER A -20 REMARK 465 SER A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 SER A -12 REMARK 465 SER A -11 REMARK 465 GLY A -10 REMARK 465 LEU A -9 REMARK 465 VAL A -8 REMARK 465 PRO A -7 REMARK 465 ARG A -6 REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 HIS A -3 REMARK 465 SER A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 HIS A 4 REMARK 465 THR A 5 REMARK 465 LEU A 6 REMARK 465 ASP A 418 REMARK 465 ASN A 419 REMARK 465 GLY A 420 REMARK 465 VAL A 421 REMARK 465 ARG A 422 REMARK 465 SER A 423 REMARK 465 GLY B 2 REMARK 465 PRO B 3 REMARK 465 ASP B 4 REMARK 465 GLY B 5 REMARK 465 ALA B 81 REMARK 465 ALA B 82 REMARK 465 ALA B 83 REMARK 465 LEU B 84 REMARK 465 GLU B 85 REMARK 465 HIS B 86 REMARK 465 HIS B 87 REMARK 465 HIS B 88 REMARK 465 HIS B 89 REMARK 465 HIS B 90 REMARK 465 HIS B 91 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 14 35.38 -99.40 REMARK 500 VAL A 149 -60.07 -129.77 REMARK 500 THR A 215 -150.59 -93.46 REMARK 500 ASP A 249 -78.28 -105.12 REMARK 500 ASP A 334 73.37 52.18 REMARK 500 THR A 384 68.46 -113.70 REMARK 500 HIS B 25 65.71 39.42 REMARK 500 HIS B 68 76.80 -119.87 REMARK 500 PRO B 69 50.89 -94.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KH4 B 101 N3 REMARK 620 2 HEM A 501 NA 91.2 REMARK 620 3 HEM A 501 NB 83.1 90.4 REMARK 620 4 HEM A 501 NC 87.0 178.2 89.2 REMARK 620 5 HEM A 501 ND 97.5 90.1 179.2 90.3 REMARK 620 6 CYS A 357 SG 162.8 97.3 82.0 84.4 97.3 REMARK 620 N 1 2 3 4 5 REMARK 630 REMARK 630 MOLECULE TYPE: NULL REMARK 630 MOLECULE NAME: S-[2-({N-[(2R)-2-HYDROXY-3,3-DIMETHYL-4- REMARK 630 (PHOSPHONOOXY)BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] 1H-IMIDAZOLE-4- REMARK 630 CARBOTHIOATE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 KH4 B 101 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: 2JD BAL 2JE REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KH4 B 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4L0E RELATED DB: PDB REMARK 900 P450SKY (CYP163B3) WITHOUT A PEPTIDYL CARRIER PROTEIN REMARK 900 BINDING PARTNER REMARK 900 RELATED ID: 4L0F RELATED DB: PDB REMARK 900 P450SKY (CYP163B3) WITHOUT A PEPTIDYL CARRIER PROTEIN REMARK 900 BINDING PARTNER REMARK 900 RELATED ID: 4PXH RELATED DB: PDB REMARK 900 P450SKY (CYP163B3) / PEPTIDYL CARRIER PROTEIN COMPLEX DBREF 4PWV A 1 423 UNP F2YRY7 F2YRY7_9ACTO 1 423 DBREF 4PWV B 2 81 UNP F2YRY5 F2YRY5_9ACTO 3075 3154 SEQADV 4PWV MSE A -22 UNP F2YRY7 EXPRESSION TAG SEQADV 4PWV GLY A -21 UNP F2YRY7 EXPRESSION TAG SEQADV 4PWV SER A -20 UNP F2YRY7 EXPRESSION TAG SEQADV 4PWV SER A -19 UNP F2YRY7 EXPRESSION TAG SEQADV 4PWV HIS A -18 UNP F2YRY7 EXPRESSION TAG SEQADV 4PWV HIS A -17 UNP F2YRY7 EXPRESSION TAG SEQADV 4PWV HIS A -16 UNP F2YRY7 EXPRESSION TAG SEQADV 4PWV HIS A -15 UNP F2YRY7 EXPRESSION TAG SEQADV 4PWV HIS A -14 UNP F2YRY7 EXPRESSION TAG SEQADV 4PWV HIS A -13 UNP F2YRY7 EXPRESSION TAG SEQADV 4PWV SER A -12 UNP F2YRY7 EXPRESSION TAG SEQADV 4PWV SER A -11 UNP F2YRY7 EXPRESSION TAG SEQADV 4PWV GLY A -10 UNP F2YRY7 EXPRESSION TAG SEQADV 4PWV LEU A -9 UNP F2YRY7 EXPRESSION TAG SEQADV 4PWV VAL A -8 UNP F2YRY7 EXPRESSION TAG SEQADV 4PWV PRO A -7 UNP F2YRY7 EXPRESSION TAG SEQADV 4PWV ARG A -6 UNP F2YRY7 EXPRESSION TAG SEQADV 4PWV GLY A -5 UNP F2YRY7 EXPRESSION TAG SEQADV 4PWV SER A -4 UNP F2YRY7 EXPRESSION TAG SEQADV 4PWV HIS A -3 UNP F2YRY7 EXPRESSION TAG SEQADV 4PWV SER A -2 UNP F2YRY7 EXPRESSION TAG SEQADV 4PWV GLY A -1 UNP F2YRY7 EXPRESSION TAG SEQADV 4PWV HIS A 0 UNP F2YRY7 EXPRESSION TAG SEQADV 4PWV ALA B 82 UNP F2YRY5 EXPRESSION TAG SEQADV 4PWV ALA B 83 UNP F2YRY5 EXPRESSION TAG SEQADV 4PWV LEU B 84 UNP F2YRY5 EXPRESSION TAG SEQADV 4PWV GLU B 85 UNP F2YRY5 EXPRESSION TAG SEQADV 4PWV HIS B 86 UNP F2YRY5 EXPRESSION TAG SEQADV 4PWV HIS B 87 UNP F2YRY5 EXPRESSION TAG SEQADV 4PWV HIS B 88 UNP F2YRY5 EXPRESSION TAG SEQADV 4PWV HIS B 89 UNP F2YRY5 EXPRESSION TAG SEQADV 4PWV HIS B 90 UNP F2YRY5 EXPRESSION TAG SEQADV 4PWV HIS B 91 UNP F2YRY5 EXPRESSION TAG SEQRES 1 A 446 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 446 LEU VAL PRO ARG GLY SER HIS SER GLY HIS MSE THR ALA SEQRES 3 A 446 HIS THR LEU PRO ILE PRO ASP ASP ILE SER THR ILE ASN SEQRES 4 A 446 LEU THR ASP PRO ARG THR TYR GLU VAL ASN ASP LEU SER SEQRES 5 A 446 GLU TYR TRP ARG GLN LEU ARG THR THR ARG PRO LEU TYR SEQRES 6 A 446 TRP HIS PRO PRO VAL GLY ASP ALA PRO GLY PHE TRP VAL SEQRES 7 A 446 VAL SER ARG TYR ALA ASP VAL MSE ALA LEU TYR LYS ASP SEQRES 8 A 446 ASN LYS LYS LEU THR SER GLU LYS GLY ASN VAL LEU VAL SEQRES 9 A 446 THR LEU LEU ALA GLY GLY ASP SER ALA ALA GLY LYS MSE SEQRES 10 A 446 LEU ALA VAL THR ASP GLY ALA MSE HIS ARG GLY LEU ARG SEQRES 11 A 446 ASN VAL LEU LEU LYS SER PHE SER PRO GLN ALA LEU LYS SEQRES 12 A 446 PRO ILE VAL ASP GLN ILE ARG VAL ASN THR THR ARG LEU SEQRES 13 A 446 VAL VAL ASP ALA ALA ARG ARG GLY GLU CYS ASP PHE ALA SEQRES 14 A 446 ALA ASP VAL ALA GLU GLN ILE PRO LEU ASN THR ILE SER SEQRES 15 A 446 ASP LEU LEU GLY VAL PRO ALA ALA ASP ARG GLU PHE LEU SEQRES 16 A 446 LEU LYS LEU ASN LYS SER ALA LEU SER SER GLU ASP ALA SEQRES 17 A 446 ASP GLN SER ALA THR ASP ALA TRP LEU ALA ARG ASN GLU SEQRES 18 A 446 ILE LEU LEU TYR PHE SER GLU LEU VAL ALA GLU ARG ARG SEQRES 19 A 446 ALA LYS PRO THR GLU ASP VAL ILE SER VAL LEU ALA ASN SEQRES 20 A 446 SER MSE VAL ASP GLY LYS PRO LEU THR GLU GLU VAL ILE SEQRES 21 A 446 VAL LEU ASN CYS TYR SER LEU ILE LEU GLY GLY ASP GLU SEQRES 22 A 446 THR SER ARG LEU SER MSE ILE ASP SER VAL GLN THR PHE SEQRES 23 A 446 THR GLN TYR PRO ASP GLN TRP GLU LEU LEU ARG ASP GLY SEQRES 24 A 446 LYS VAL THR LEU GLU SER ALA THR GLU GLU VAL LEU ARG SEQRES 25 A 446 TRP ALA THR PRO ALA MSE HIS PHE GLY ARG ARG ALA VAL SEQRES 26 A 446 THR ASP MSE GLU LEU HIS GLY GLN VAL ILE ALA ALA GLY SEQRES 27 A 446 ASP VAL VAL THR LEU TRP ASN ASN SER ALA ASN ARG ASP SEQRES 28 A 446 GLU GLU VAL PHE ALA ASP PRO TYR ALA PHE ASP LEU ASN SEQRES 29 A 446 ARG SER PRO ASN LYS HIS ILE THR PHE GLY TYR GLY PRO SEQRES 30 A 446 HIS PHE CYS LEU GLY ALA TYR LEU GLY ARG ALA GLU VAL SEQRES 31 A 446 HIS ALA LEU LEU ASP ALA LEU ARG THR TYR THR THR GLY SEQRES 32 A 446 PHE GLU ILE THR GLY GLU PRO GLN ARG ILE HIS SER ASN SEQRES 33 A 446 PHE LEU THR GLY LEU SER ARG LEU PRO VAL ARG ILE GLN SEQRES 34 A 446 PRO ASN GLU ALA ALA ILE ALA ALA TYR ASP SER ASP ASN SEQRES 35 A 446 GLY VAL ARG SER SEQRES 1 B 90 GLY PRO ASP GLY ARG GLU PRO ARG ASN GLU THR GLU SER SEQRES 2 B 90 ARG LEU ARG ARG ILE PHE GLU GLU VAL LEU HIS SER GLU SEQRES 3 B 90 ASP VAL ASP VAL GLU ALA ASN PHE PHE GLU LEU GLY GLY SEQRES 4 B 90 HIS SER LEU GLN ALA THR LYS LEU VAL SER ARG ILE ARG SEQRES 5 B 90 SER GLU PHE ASP ALA GLU LEU PRO LEU ARG ASP PHE PHE SEQRES 6 B 90 GLU HIS PRO ASN VAL ALA GLY LEU ALA VAL LEU ILE GLY SEQRES 7 B 90 GLY ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS MODRES 4PWV MSE A 63 MET SELENOMETHIONINE MODRES 4PWV MSE A 94 MET SELENOMETHIONINE MODRES 4PWV MSE A 102 MET SELENOMETHIONINE MODRES 4PWV MSE A 226 MET SELENOMETHIONINE MODRES 4PWV MSE A 256 MET SELENOMETHIONINE MODRES 4PWV MSE A 295 MET SELENOMETHIONINE MODRES 4PWV MSE A 305 MET SELENOMETHIONINE HET MSE A 63 8 HET MSE A 94 8 HET MSE A 102 8 HET MSE A 226 8 HET MSE A 256 8 HET MSE A 295 8 HET MSE A 305 8 HET HEM A 501 43 HET KH4 B 101 28 HETNAM MSE SELENOMETHIONINE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM KH4 S-[2-({N-[(2R)-2-HYDROXY-3,3-DIMETHYL-4-(PHOSPHONOOXY) HETNAM 2 KH4 BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] 1H-IMIDAZOLE-4- HETNAM 3 KH4 CARBOTHIOATE HETSYN HEM HEME FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 3 HEM C34 H32 FE N4 O4 FORMUL 4 KH4 C15 H25 N4 O8 P S HELIX 1 1 PRO A 20 VAL A 25 1 6 HELIX 2 2 LEU A 28 ARG A 39 1 12 HELIX 3 3 ARG A 58 LYS A 67 1 10 HELIX 4 4 VAL A 79 LEU A 84 1 6 HELIX 5 5 MSE A 94 THR A 98 5 5 HELIX 6 6 ASP A 99 LEU A 111 1 13 HELIX 7 7 SER A 115 GLY A 141 1 27 HELIX 8 8 PHE A 145 VAL A 149 1 5 HELIX 9 9 ALA A 150 GLN A 152 5 3 HELIX 10 10 ILE A 153 GLY A 163 1 11 HELIX 11 11 PRO A 165 ALA A 167 5 3 HELIX 12 12 ASP A 168 LEU A 180 1 13 HELIX 13 13 SER A 188 LYS A 213 1 26 HELIX 14 14 ASP A 217 ASN A 224 1 8 HELIX 15 15 THR A 233 GLY A 248 1 16 HELIX 16 16 ASP A 249 TYR A 266 1 18 HELIX 17 17 TYR A 266 ASP A 275 1 10 HELIX 18 18 THR A 279 ALA A 291 1 13 HELIX 19 19 ASN A 322 ASN A 326 1 5 HELIX 20 20 TYR A 352 PHE A 356 5 5 HELIX 21 21 GLY A 359 TYR A 377 1 19 HELIX 22 22 ASN A 408 ASP A 416 1 9 HELIX 23 23 ASN B 10 LEU B 24 1 15 HELIX 24 24 HIS B 41 PHE B 56 1 16 HELIX 25 25 PRO B 61 HIS B 68 1 8 HELIX 26 26 ASN B 70 GLY B 80 1 11 SHEET 1 A 5 LEU A 41 HIS A 44 0 SHEET 2 A 5 PHE A 53 VAL A 56 -1 O VAL A 55 N TYR A 42 SHEET 3 A 5 VAL A 317 TRP A 321 1 O VAL A 317 N TRP A 54 SHEET 4 A 5 HIS A 296 ALA A 301 -1 N PHE A 297 O LEU A 320 SHEET 5 A 5 LEU A 72 THR A 73 -1 N THR A 73 O ARG A 300 SHEET 1 B 3 GLU A 142 ASP A 144 0 SHEET 2 B 3 PRO A 402 PRO A 407 -1 O VAL A 403 N CYS A 143 SHEET 3 B 3 THR A 378 ILE A 383 -1 N THR A 379 O GLN A 406 SHEET 1 C 2 MSE A 226 VAL A 227 0 SHEET 2 C 2 LYS A 230 PRO A 231 -1 O LYS A 230 N VAL A 227 SHEET 1 D 2 MSE A 305 LEU A 307 0 SHEET 2 D 2 GLN A 310 ILE A 312 -1 O GLN A 310 N LEU A 307 SHEET 1 E 2 GLN A 388 ARG A 389 0 SHEET 2 E 2 LEU A 398 ARG A 400 -1 O SER A 399 N GLN A 388 LINK C VAL A 62 N MSE A 63 1555 1555 1.33 LINK C MSE A 63 N ALA A 64 1555 1555 1.33 LINK C LYS A 93 N MSE A 94 1555 1555 1.33 LINK C MSE A 94 N LEU A 95 1555 1555 1.33 LINK C ALA A 101 N MSE A 102 1555 1555 1.33 LINK C MSE A 102 N HIS A 103 1555 1555 1.33 LINK C SER A 225 N MSE A 226 1555 1555 1.33 LINK C MSE A 226 N VAL A 227 1555 1555 1.33 LINK C SER A 255 N MSE A 256 1555 1555 1.33 LINK C MSE A 256 N ILE A 257 1555 1555 1.33 LINK C ALA A 294 N MSE A 295 1555 1555 1.33 LINK C MSE A 295 N HIS A 296 1555 1555 1.33 LINK C ASP A 304 N MSE A 305 1555 1555 1.33 LINK C MSE A 305 N GLU A 306 1555 1555 1.33 LINK FE HEM A 501 N3 KH4 B 101 1555 1555 1.99 LINK SG CYS A 357 FE HEM A 501 1555 1555 2.34 LINK OG SER B 42 P KH4 B 101 1555 1555 1.61 CISPEP 1 SER A 343 PRO A 344 0 2.22 SITE 1 AC1 23 TYR A 66 ASN A 78 LEU A 95 ALA A 96 SITE 2 AC1 23 HIS A 103 ARG A 107 PHE A 114 LEU A 244 SITE 3 AC1 23 GLY A 247 GLY A 248 THR A 251 SER A 252 SITE 4 AC1 23 SER A 255 LEU A 288 PHE A 297 ARG A 299 SITE 5 AC1 23 THR A 349 PHE A 350 GLY A 351 HIS A 355 SITE 6 AC1 23 CYS A 357 GLY A 359 KH4 B 101 SITE 1 AC2 13 THR A 82 ASP A 88 SER A 89 MSE A 94 SITE 2 AC2 13 LEU A 180 TRP A 193 TYR A 242 LEU A 246 SITE 3 AC2 13 GLY A 247 THR A 251 PHE A 297 HEM A 501 SITE 4 AC2 13 SER B 42 CRYST1 95.260 95.260 336.800 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010498 0.006061 0.000000 0.00000 SCALE2 0.000000 0.012122 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002969 0.00000