HEADER PROTEIN TRANSPORT 21-MAR-14 4PWZ TITLE CRYSTAL STRUCTURE OF TOLB PROTEIN FROM YERSINIA PESTIS CO92 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TOLB; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 23-430; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 214092; SOURCE 4 STRAIN: CO92; SOURCE 5 GENE: TOLB, Y3055, YPO1124, YP_1032; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG68 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 3 DISEASES, CSGID, ALPHA-BETA FOLD AND BETA PROPELLER FOLD, KEYWDS 4 TRANSLOCATION, PAL, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR N.MALTSEVA,Y.KIM,J.OSIPIUK,W.F.ANDERSON,A.JOACHIMIAK,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 3 06-DEC-23 4PWZ 1 REMARK REVDAT 2 20-SEP-23 4PWZ 1 REMARK SEQADV LINK REVDAT 1 02-APR-14 4PWZ 0 JRNL AUTH N.MALTSEVA,Y.KIM,J.OSIPIUK,W.F.ANDERSON,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF TOLB PROTEIN FROM YERSINIA PESTIS CO92 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1593) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 79632 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 3993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.7448 - 5.3122 0.99 2720 142 0.1577 0.1735 REMARK 3 2 5.3122 - 4.2199 1.00 2751 137 0.1256 0.1520 REMARK 3 3 4.2199 - 3.6875 1.00 2693 137 0.1462 0.1650 REMARK 3 4 3.6875 - 3.3508 1.00 2720 146 0.1541 0.1799 REMARK 3 5 3.3508 - 3.1109 1.00 2682 159 0.1745 0.1917 REMARK 3 6 3.1109 - 2.9276 1.00 2690 153 0.1823 0.2201 REMARK 3 7 2.9276 - 2.7811 1.00 2659 148 0.1813 0.1792 REMARK 3 8 2.7811 - 2.6601 1.00 2728 136 0.1753 0.2250 REMARK 3 9 2.6601 - 2.5578 1.00 2699 147 0.1801 0.1905 REMARK 3 10 2.5578 - 2.4695 1.00 2676 149 0.1777 0.2056 REMARK 3 11 2.4695 - 2.3923 1.00 2679 152 0.1785 0.2243 REMARK 3 12 2.3923 - 2.3240 1.00 2689 140 0.1693 0.2135 REMARK 3 13 2.3240 - 2.2628 1.00 2692 149 0.1707 0.2033 REMARK 3 14 2.2628 - 2.2076 1.00 2708 133 0.1795 0.2457 REMARK 3 15 2.2076 - 2.1575 1.00 2692 137 0.1719 0.1981 REMARK 3 16 2.1575 - 2.1116 1.00 2680 139 0.1687 0.1773 REMARK 3 17 2.1116 - 2.0693 1.00 2692 119 0.1663 0.1858 REMARK 3 18 2.0693 - 2.0303 1.00 2678 147 0.1773 0.2322 REMARK 3 19 2.0303 - 1.9940 1.00 2724 132 0.1714 0.2368 REMARK 3 20 1.9940 - 1.9602 1.00 2685 116 0.1784 0.2101 REMARK 3 21 1.9602 - 1.9286 0.99 2660 136 0.1754 0.2535 REMARK 3 22 1.9286 - 1.8990 0.99 2663 163 0.1827 0.1942 REMARK 3 23 1.8990 - 1.8710 0.98 2581 143 0.1771 0.2294 REMARK 3 24 1.8710 - 1.8447 0.95 2568 150 0.1828 0.2698 REMARK 3 25 1.8447 - 1.8198 0.94 2515 139 0.1914 0.2570 REMARK 3 26 1.8198 - 1.7961 0.90 2453 118 0.1917 0.2384 REMARK 3 27 1.7961 - 1.7737 0.85 2285 105 0.2051 0.2813 REMARK 3 28 1.7737 - 1.7523 0.81 2161 114 0.2064 0.2455 REMARK 3 29 1.7523 - 1.7320 0.68 1816 107 0.2126 0.2506 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 6762 REMARK 3 ANGLE : 1.287 9276 REMARK 3 CHIRALITY : 0.069 1015 REMARK 3 PLANARITY : 0.008 1246 REMARK 3 DIHEDRAL : 14.003 2501 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.5571 11.5345 52.0796 REMARK 3 T TENSOR REMARK 3 T11: 0.0388 T22: 0.1395 REMARK 3 T33: 0.1872 T12: 0.0213 REMARK 3 T13: 0.0511 T23: -0.0000 REMARK 3 L TENSOR REMARK 3 L11: 1.9861 L22: 1.7562 REMARK 3 L33: 8.0966 L12: -0.3892 REMARK 3 L13: 2.6703 L23: -1.4330 REMARK 3 S TENSOR REMARK 3 S11: 0.0665 S12: 0.1398 S13: -0.1933 REMARK 3 S21: -0.0734 S22: 0.0594 S23: -0.1181 REMARK 3 S31: 0.1101 S32: 0.1988 S33: -0.0819 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.6383 17.8768 57.5883 REMARK 3 T TENSOR REMARK 3 T11: 0.0816 T22: 0.0856 REMARK 3 T33: 0.0947 T12: 0.0245 REMARK 3 T13: 0.0009 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 1.8453 L22: 2.9331 REMARK 3 L33: 1.4163 L12: 0.6585 REMARK 3 L13: -0.2174 L23: 0.1893 REMARK 3 S TENSOR REMARK 3 S11: -0.0136 S12: -0.0449 S13: -0.0789 REMARK 3 S21: 0.0418 S22: -0.0125 S23: -0.0756 REMARK 3 S31: 0.0122 S32: 0.0398 S33: 0.0394 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 158 THROUGH 256 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9177 -7.5566 47.1393 REMARK 3 T TENSOR REMARK 3 T11: 0.1460 T22: 0.0972 REMARK 3 T33: 0.0929 T12: -0.0029 REMARK 3 T13: 0.0025 T23: -0.0160 REMARK 3 L TENSOR REMARK 3 L11: 1.7129 L22: 1.3608 REMARK 3 L33: 1.2221 L12: 0.2927 REMARK 3 L13: 0.3486 L23: -0.1382 REMARK 3 S TENSOR REMARK 3 S11: 0.0190 S12: 0.1137 S13: -0.2488 REMARK 3 S21: -0.1272 S22: 0.0243 S23: -0.0629 REMARK 3 S31: 0.1648 S32: -0.0420 S33: -0.0354 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 257 THROUGH 344 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0223 1.6101 35.6716 REMARK 3 T TENSOR REMARK 3 T11: 0.1314 T22: 0.1334 REMARK 3 T33: 0.0875 T12: 0.0013 REMARK 3 T13: -0.0237 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.9391 L22: 2.6740 REMARK 3 L33: 2.6508 L12: 0.5261 REMARK 3 L13: 0.2222 L23: -0.2553 REMARK 3 S TENSOR REMARK 3 S11: -0.0802 S12: -0.0689 S13: -0.0111 REMARK 3 S21: -0.1412 S22: 0.0649 S23: 0.1601 REMARK 3 S31: 0.0065 S32: -0.2209 S33: 0.0071 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 345 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5957 5.3802 35.2613 REMARK 3 T TENSOR REMARK 3 T11: 0.1624 T22: 0.1394 REMARK 3 T33: 0.1019 T12: -0.0399 REMARK 3 T13: 0.0165 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 2.8451 L22: 2.2247 REMARK 3 L33: 2.9751 L12: -0.3471 REMARK 3 L13: -0.0180 L23: -0.4115 REMARK 3 S TENSOR REMARK 3 S11: -0.0694 S12: 0.2269 S13: -0.0534 REMARK 3 S21: -0.2896 S22: -0.0267 S23: -0.1261 REMARK 3 S31: 0.0549 S32: 0.2750 S33: 0.0906 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.8866 -16.9643 68.7970 REMARK 3 T TENSOR REMARK 3 T11: 0.0827 T22: 0.1187 REMARK 3 T33: 0.1303 T12: -0.0088 REMARK 3 T13: -0.0074 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 0.8949 L22: 2.1055 REMARK 3 L33: 0.5473 L12: -0.8990 REMARK 3 L13: -0.0724 L23: 0.1009 REMARK 3 S TENSOR REMARK 3 S11: 0.0416 S12: 0.0280 S13: 0.1276 REMARK 3 S21: -0.0949 S22: -0.0834 S23: -0.1676 REMARK 3 S31: -0.0219 S32: 0.0765 S33: 0.0244 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 199 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8577 -6.2205 80.4047 REMARK 3 T TENSOR REMARK 3 T11: 0.0918 T22: 0.1022 REMARK 3 T33: 0.0797 T12: 0.0022 REMARK 3 T13: -0.0080 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 0.9891 L22: 1.0636 REMARK 3 L33: 1.2310 L12: -0.1480 REMARK 3 L13: -0.4827 L23: -0.3708 REMARK 3 S TENSOR REMARK 3 S11: -0.0230 S12: -0.0546 S13: 0.0263 REMARK 3 S21: 0.1030 S22: 0.0207 S23: 0.0070 REMARK 3 S31: -0.0828 S32: -0.0624 S33: 0.0042 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PWZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000085323. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK HIGH-RESOLUTION REMARK 200 DOUBLE-CRYSTAL SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81921 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.60700 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1C5K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, PH 6.5, 10% PEG5000 MME, REMARK 280 12% 1-PROPANOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.90650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 ASN A 352 REMARK 465 GLY A 353 REMARK 465 GLY A 354 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 ASN B 352 REMARK 465 GLY B 353 REMARK 465 GLY B 354 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE B 273 CG - SE - CE ANGL. DEV. = -21.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO B 243 -179.32 -67.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP00493 RELATED DB: TARGETTRACK DBREF 4PWZ A 23 430 UNP Q8ZGZ1 TOLB_YERPE 23 430 DBREF 4PWZ B 23 430 UNP Q8ZGZ1 TOLB_YERPE 23 430 SEQADV 4PWZ SER A -2 UNP Q8ZGZ1 EXPRESSION TAG SEQADV 4PWZ ASN A -1 UNP Q8ZGZ1 EXPRESSION TAG SEQADV 4PWZ ALA A 0 UNP Q8ZGZ1 EXPRESSION TAG SEQADV 4PWZ MSE A 1 UNP Q8ZGZ1 EXPRESSION TAG SEQADV 4PWZ SER B -2 UNP Q8ZGZ1 EXPRESSION TAG SEQADV 4PWZ ASN B -1 UNP Q8ZGZ1 EXPRESSION TAG SEQADV 4PWZ ALA B 0 UNP Q8ZGZ1 EXPRESSION TAG SEQADV 4PWZ MSE B 1 UNP Q8ZGZ1 EXPRESSION TAG SEQRES 1 A 412 SER ASN ALA MSE VAL ARG ILE GLU ILE THR GLN GLY VAL SEQRES 2 A 412 ASP SER ALA ARG PRO ILE GLY VAL VAL PRO PHE LYS TRP SEQRES 3 A 412 MSE GLY PRO GLY THR PRO PRO GLU GLU ILE GLY ALA ILE SEQRES 4 A 412 VAL GLY ALA ASP LEU ARG ASN SER GLY LYS PHE ASN PRO SEQRES 5 A 412 ILE ASP ALA ALA ARG MSE PRO GLN GLN PRO SER THR ALA SEQRES 6 A 412 ALA GLU VAL THR PRO ALA ALA TRP THR ALA LEU GLY ILE SEQRES 7 A 412 ASP ALA VAL VAL VAL GLY GLN VAL GLN PRO SER ALA ASP SEQRES 8 A 412 GLY SER TYR VAL VAL SER TYR GLN LEU VAL ASP THR SER SEQRES 9 A 412 GLY SER ALA GLY SER ILE LEU ALA GLN ASN GLN TYR LYS SEQRES 10 A 412 VAL THR LYS GLN TRP LEU ARG TYR SER ALA HIS THR VAL SEQRES 11 A 412 SER ASP GLU VAL PHE GLU LYS LEU THR GLY ILE LYS GLY SEQRES 12 A 412 ALA PHE ARG THR ARG ILE ALA TYR VAL VAL LYS THR ASN SEQRES 13 A 412 GLY GLY LYS PHE PRO HIS GLU LEU ARG VAL SER ASP TYR SEQRES 14 A 412 ASP GLY TYR ASN GLN PHE VAL VAL HIS ARG SER PRO GLU SEQRES 15 A 412 PRO LEU MSE SER PRO ALA TRP SER PRO ASP GLY SER LYS SEQRES 16 A 412 ILE ALA TYR VAL THR PHE GLU SER GLY LYS SER ALA LEU SEQRES 17 A 412 VAL ILE GLN THR LEU ALA ASN GLY ALA ILE ARG GLN VAL SEQRES 18 A 412 ALA SER PHE PRO ARG HIS ASN GLY ALA PRO ALA PHE SER SEQRES 19 A 412 PRO ASP GLY THR LYS LEU ALA PHE ALA LEU SER LYS SER SEQRES 20 A 412 GLY SER LEU ASN LEU TYR VAL MSE ASP LEU ALA SER GLY SEQRES 21 A 412 GLN ILE SER GLN VAL THR ASP GLY ARG SER ASN ASN THR SEQRES 22 A 412 GLU PRO SER TRP PHE PRO ASP SER GLN ASN LEU ALA TYR SEQRES 23 A 412 THR SER ASP GLN GLY GLY ARG PRO GLN VAL TYR LYS VAL SEQRES 24 A 412 ASN ILE ASN GLY GLY VAL PRO GLN ARG ILE THR TRP GLU SEQRES 25 A 412 GLY SER GLN ASN GLN ASN ALA ASP VAL SER PRO ASP GLY SEQRES 26 A 412 LYS PHE LEU VAL LEU VAL SER SER ASN GLY GLY ALA GLN SEQRES 27 A 412 HIS ILE ALA LYS GLN ASP LEU GLU THR GLY ALA VAL GLN SEQRES 28 A 412 VAL LEU THR ASP THR LEU LEU ASP GLU THR PRO SER ILE SEQRES 29 A 412 ALA PRO ASN GLY THR MSE VAL ILE TYR SER SER THR GLN SEQRES 30 A 412 GLY LEU GLY SER VAL LEU GLN LEU VAL SER THR ASP GLY SEQRES 31 A 412 ARG PHE LYS ALA ARG LEU PRO ALA THR ASP GLY GLN VAL SEQRES 32 A 412 LYS PHE PRO ALA TRP SER PRO TYR LEU SEQRES 1 B 412 SER ASN ALA MSE VAL ARG ILE GLU ILE THR GLN GLY VAL SEQRES 2 B 412 ASP SER ALA ARG PRO ILE GLY VAL VAL PRO PHE LYS TRP SEQRES 3 B 412 MSE GLY PRO GLY THR PRO PRO GLU GLU ILE GLY ALA ILE SEQRES 4 B 412 VAL GLY ALA ASP LEU ARG ASN SER GLY LYS PHE ASN PRO SEQRES 5 B 412 ILE ASP ALA ALA ARG MSE PRO GLN GLN PRO SER THR ALA SEQRES 6 B 412 ALA GLU VAL THR PRO ALA ALA TRP THR ALA LEU GLY ILE SEQRES 7 B 412 ASP ALA VAL VAL VAL GLY GLN VAL GLN PRO SER ALA ASP SEQRES 8 B 412 GLY SER TYR VAL VAL SER TYR GLN LEU VAL ASP THR SER SEQRES 9 B 412 GLY SER ALA GLY SER ILE LEU ALA GLN ASN GLN TYR LYS SEQRES 10 B 412 VAL THR LYS GLN TRP LEU ARG TYR SER ALA HIS THR VAL SEQRES 11 B 412 SER ASP GLU VAL PHE GLU LYS LEU THR GLY ILE LYS GLY SEQRES 12 B 412 ALA PHE ARG THR ARG ILE ALA TYR VAL VAL LYS THR ASN SEQRES 13 B 412 GLY GLY LYS PHE PRO HIS GLU LEU ARG VAL SER ASP TYR SEQRES 14 B 412 ASP GLY TYR ASN GLN PHE VAL VAL HIS ARG SER PRO GLU SEQRES 15 B 412 PRO LEU MSE SER PRO ALA TRP SER PRO ASP GLY SER LYS SEQRES 16 B 412 ILE ALA TYR VAL THR PHE GLU SER GLY LYS SER ALA LEU SEQRES 17 B 412 VAL ILE GLN THR LEU ALA ASN GLY ALA ILE ARG GLN VAL SEQRES 18 B 412 ALA SER PHE PRO ARG HIS ASN GLY ALA PRO ALA PHE SER SEQRES 19 B 412 PRO ASP GLY THR LYS LEU ALA PHE ALA LEU SER LYS SER SEQRES 20 B 412 GLY SER LEU ASN LEU TYR VAL MSE ASP LEU ALA SER GLY SEQRES 21 B 412 GLN ILE SER GLN VAL THR ASP GLY ARG SER ASN ASN THR SEQRES 22 B 412 GLU PRO SER TRP PHE PRO ASP SER GLN ASN LEU ALA TYR SEQRES 23 B 412 THR SER ASP GLN GLY GLY ARG PRO GLN VAL TYR LYS VAL SEQRES 24 B 412 ASN ILE ASN GLY GLY VAL PRO GLN ARG ILE THR TRP GLU SEQRES 25 B 412 GLY SER GLN ASN GLN ASN ALA ASP VAL SER PRO ASP GLY SEQRES 26 B 412 LYS PHE LEU VAL LEU VAL SER SER ASN GLY GLY ALA GLN SEQRES 27 B 412 HIS ILE ALA LYS GLN ASP LEU GLU THR GLY ALA VAL GLN SEQRES 28 B 412 VAL LEU THR ASP THR LEU LEU ASP GLU THR PRO SER ILE SEQRES 29 B 412 ALA PRO ASN GLY THR MSE VAL ILE TYR SER SER THR GLN SEQRES 30 B 412 GLY LEU GLY SER VAL LEU GLN LEU VAL SER THR ASP GLY SEQRES 31 B 412 ARG PHE LYS ALA ARG LEU PRO ALA THR ASP GLY GLN VAL SEQRES 32 B 412 LYS PHE PRO ALA TRP SER PRO TYR LEU MODRES 4PWZ MSE A 45 MET SELENOMETHIONINE MODRES 4PWZ MSE A 76 MET SELENOMETHIONINE MODRES 4PWZ MSE A 203 MET SELENOMETHIONINE MODRES 4PWZ MSE A 273 MET SELENOMETHIONINE MODRES 4PWZ MSE A 388 MET SELENOMETHIONINE MODRES 4PWZ MSE B 1 MET SELENOMETHIONINE MODRES 4PWZ MSE B 45 MET SELENOMETHIONINE MODRES 4PWZ MSE B 76 MET SELENOMETHIONINE MODRES 4PWZ MSE B 203 MET SELENOMETHIONINE MODRES 4PWZ MSE B 273 MET SELENOMETHIONINE MODRES 4PWZ MSE B 388 MET SELENOMETHIONINE HET MSE A 45 8 HET MSE A 76 8 HET MSE A 203 16 HET MSE A 273 8 HET MSE A 388 16 HET MSE B 1 8 HET MSE B 45 8 HET MSE B 76 8 HET MSE B 203 8 HET MSE B 273 16 HET MSE B 388 16 HET PEG A 501 7 HET GOL B 501 6 HET MES B 502 12 HET SO4 B 503 5 HET PEG B 504 7 HETNAM MSE SELENOMETHIONINE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 3 PEG 2(C4 H10 O3) FORMUL 4 GOL C3 H8 O3 FORMUL 5 MES C6 H13 N O4 S FORMUL 6 SO4 O4 S 2- FORMUL 8 HOH *553(H2 O) HELIX 1 1 GLU A 53 SER A 65 1 13 HELIX 2 2 ASP A 72 MSE A 76 5 5 HELIX 3 3 THR A 82 VAL A 86 5 5 HELIX 4 4 THR A 87 ALA A 93 1 7 HELIX 5 5 THR A 137 GLN A 139 5 3 HELIX 6 6 TRP A 140 GLY A 158 1 19 HELIX 7 7 GLU B 53 SER B 65 1 13 HELIX 8 8 ASP B 72 MSE B 76 5 5 HELIX 9 9 THR B 82 VAL B 86 5 5 HELIX 10 10 THR B 87 ALA B 93 1 7 HELIX 11 11 THR B 137 GLN B 139 5 3 HELIX 12 12 TRP B 140 GLY B 158 1 19 SHEET 1 A 5 GLU A 26 GLN A 29 0 SHEET 2 A 5 LYS A 411 ARG A 413 -1 O ARG A 413 N GLU A 26 SHEET 3 A 5 GLY A 398 SER A 405 -1 N LEU A 403 O ALA A 412 SHEET 4 A 5 MSE A 388 GLN A 395 -1 N GLN A 395 O GLY A 398 SHEET 5 A 5 LEU A 375 ILE A 382 -1 N LEU A 375 O THR A 394 SHEET 1 B 4 LYS A 43 TRP A 44 0 SHEET 2 B 4 ALA A 98 PRO A 106 1 O GLY A 102 N LYS A 43 SHEET 3 B 4 ARG A 35 VAL A 39 1 N GLY A 38 O VAL A 100 SHEET 4 B 4 PHE A 68 PRO A 70 1 O ASN A 69 N ARG A 35 SHEET 1 C 4 LYS A 43 TRP A 44 0 SHEET 2 C 4 ALA A 98 PRO A 106 1 O GLY A 102 N LYS A 43 SHEET 3 C 4 TYR A 112 ASP A 120 -1 O VAL A 119 N VAL A 99 SHEET 4 C 4 SER A 127 VAL A 136 -1 O ALA A 130 N LEU A 118 SHEET 1 D 4 PHE A 193 SER A 198 0 SHEET 2 D 4 HIS A 180 ASP A 186 -1 N LEU A 182 O VAL A 195 SHEET 3 D 4 ARG A 166 LYS A 172 -1 N TYR A 169 O ARG A 183 SHEET 4 D 4 GLN A 420 TRP A 426 -1 O LYS A 422 N VAL A 170 SHEET 1 E 4 LEU A 202 TRP A 207 0 SHEET 2 E 4 LYS A 213 THR A 218 -1 O ALA A 215 N ALA A 206 SHEET 3 E 4 SER A 224 THR A 230 -1 O GLN A 229 N ILE A 214 SHEET 4 E 4 ILE A 236 PHE A 242 -1 O VAL A 239 N LEU A 226 SHEET 1 F 4 GLY A 247 PHE A 251 0 SHEET 2 F 4 LYS A 257 LEU A 262 -1 O ALA A 259 N ALA A 250 SHEET 3 F 4 ASN A 269 ASP A 274 -1 O TYR A 271 N PHE A 260 SHEET 4 F 4 ILE A 280 GLN A 282 -1 O SER A 281 N VAL A 272 SHEET 1 G 4 ASN A 290 TRP A 295 0 SHEET 2 G 4 ASN A 301 SER A 306 -1 O THR A 305 N THR A 291 SHEET 3 G 4 GLN A 313 ASN A 318 -1 O GLN A 313 N SER A 306 SHEET 4 G 4 GLN A 325 ARG A 326 -1 O GLN A 325 N LYS A 316 SHEET 1 H 4 GLN A 333 VAL A 339 0 SHEET 2 H 4 PHE A 345 SER A 351 -1 O VAL A 349 N GLN A 335 SHEET 3 H 4 HIS A 357 ASP A 362 -1 O HIS A 357 N SER A 350 SHEET 4 H 4 VAL A 368 VAL A 370 -1 O GLN A 369 N LYS A 360 SHEET 1 I 5 GLU B 26 GLN B 29 0 SHEET 2 I 5 LYS B 411 ARG B 413 -1 O ARG B 413 N GLU B 26 SHEET 3 I 5 GLY B 398 SER B 405 -1 N LEU B 403 O ALA B 412 SHEET 4 I 5 MSE B 388 GLN B 395 -1 N GLN B 395 O GLY B 398 SHEET 5 I 5 GLU B 378 ILE B 382 -1 N GLU B 378 O SER B 392 SHEET 1 J 4 LYS B 43 TRP B 44 0 SHEET 2 J 4 ALA B 98 PRO B 106 1 O VAL B 104 N LYS B 43 SHEET 3 J 4 ARG B 35 VAL B 39 1 N GLY B 38 O VAL B 100 SHEET 4 J 4 PHE B 68 PRO B 70 1 O ASN B 69 N ARG B 35 SHEET 1 K 4 LYS B 43 TRP B 44 0 SHEET 2 K 4 ALA B 98 PRO B 106 1 O VAL B 104 N LYS B 43 SHEET 3 K 4 TYR B 112 ASP B 120 -1 O VAL B 119 N VAL B 99 SHEET 4 K 4 SER B 127 VAL B 136 -1 O SER B 127 N ASP B 120 SHEET 1 L 4 PHE B 193 SER B 198 0 SHEET 2 L 4 HIS B 180 ASP B 186 -1 N LEU B 182 O HIS B 196 SHEET 3 L 4 ARG B 166 LYS B 172 -1 N TYR B 169 O ARG B 183 SHEET 4 L 4 GLN B 420 TRP B 426 -1 O ALA B 425 N ALA B 168 SHEET 1 M 4 LEU B 202 TRP B 207 0 SHEET 2 M 4 LYS B 213 THR B 218 -1 O ALA B 215 N ALA B 206 SHEET 3 M 4 SER B 224 THR B 230 -1 O GLN B 229 N ILE B 214 SHEET 4 M 4 ILE B 236 PHE B 242 -1 O ALA B 240 N LEU B 226 SHEET 1 N 4 GLY B 247 PHE B 251 0 SHEET 2 N 4 LYS B 257 LEU B 262 -1 O ALA B 259 N ALA B 250 SHEET 3 N 4 ASN B 269 ASP B 274 -1 O TYR B 271 N PHE B 260 SHEET 4 N 4 ILE B 280 GLN B 282 -1 O SER B 281 N VAL B 272 SHEET 1 O 4 ASN B 290 TRP B 295 0 SHEET 2 O 4 ASN B 301 SER B 306 -1 O ALA B 303 N SER B 294 SHEET 3 O 4 GLN B 313 ASN B 318 -1 O TYR B 315 N TYR B 304 SHEET 4 O 4 GLN B 325 ARG B 326 -1 O GLN B 325 N LYS B 316 SHEET 1 P 4 ASN B 334 VAL B 339 0 SHEET 2 P 4 PHE B 345 SER B 350 -1 O VAL B 349 N GLN B 335 SHEET 3 P 4 HIS B 357 ASP B 362 -1 O HIS B 357 N SER B 350 SHEET 4 P 4 VAL B 368 VAL B 370 -1 O GLN B 369 N LYS B 360 LINK C TRP A 44 N MSE A 45 1555 1555 1.33 LINK C MSE A 45 N GLY A 46 1555 1555 1.33 LINK C ARG A 75 N MSE A 76 1555 1555 1.32 LINK C MSE A 76 N PRO A 77 1555 1555 1.34 LINK C LEU A 202 N AMSE A 203 1555 1555 1.32 LINK C LEU A 202 N BMSE A 203 1555 1555 1.33 LINK C AMSE A 203 N SER A 204 1555 1555 1.33 LINK C BMSE A 203 N SER A 204 1555 1555 1.33 LINK C AVAL A 272 N MSE A 273 1555 1555 1.33 LINK C BVAL A 272 N MSE A 273 1555 1555 1.33 LINK C MSE A 273 N ASP A 274 1555 1555 1.33 LINK C THR A 387 N AMSE A 388 1555 1555 1.33 LINK C THR A 387 N BMSE A 388 1555 1555 1.33 LINK C AMSE A 388 N VAL A 389 1555 1555 1.33 LINK C BMSE A 388 N VAL A 389 1555 1555 1.33 LINK C MSE B 1 N VAL B 23 1555 1555 1.32 LINK C TRP B 44 N MSE B 45 1555 1555 1.33 LINK C MSE B 45 N GLY B 46 1555 1555 1.33 LINK C ARG B 75 N MSE B 76 1555 1555 1.32 LINK C MSE B 76 N PRO B 77 1555 1555 1.35 LINK C LEU B 202 N MSE B 203 1555 1555 1.33 LINK C MSE B 203 N SER B 204 1555 1555 1.32 LINK C AVAL B 272 N AMSE B 273 1555 1555 1.32 LINK C BVAL B 272 N BMSE B 273 1555 1555 1.34 LINK C AMSE B 273 N ASP B 274 1555 1555 1.32 LINK C BMSE B 273 N ASP B 274 1555 1555 1.33 LINK C THR B 387 N AMSE B 388 1555 1555 1.33 LINK C THR B 387 N BMSE B 388 1555 1555 1.33 LINK C AMSE B 388 N VAL B 389 1555 1555 1.33 LINK C BMSE B 388 N VAL B 389 1555 1555 1.33 SITE 1 AC1 10 SER A 65 PHE A 153 GLY A 161 ALA A 162 SITE 2 AC1 10 PHE A 163 TYR A 187 ASN A 385 THR A 387 SITE 3 AC1 10 MSE A 388 HOH A 810 SITE 1 AC2 8 GLN A 139 ARG A 166 ASP A 186 ASN A 191 SITE 2 AC2 8 GLN B 139 TRP B 140 HOH B 603 HOH B 664 SITE 1 AC3 8 ARG A 166 PHE A 193 LEU A 231 TRP B 140 SITE 2 AC3 8 SO4 B 503 HOH B 654 HOH B 700 HOH B 765 SITE 1 AC4 5 ARG B 166 LEU B 231 MES B 502 HOH B 644 SITE 2 AC4 5 HOH B 704 SITE 1 AC5 9 PHE B 153 GLY B 161 ALA B 162 PHE B 163 SITE 2 AC5 9 TYR B 187 ASN B 385 THR B 387 MSE B 388 SITE 3 AC5 9 HOH B 742 CRYST1 52.440 95.813 80.514 90.00 95.39 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019069 0.000000 0.001800 0.00000 SCALE2 0.000000 0.010437 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012475 0.00000