HEADER HYDROLASE 23-MAR-14 4PXB TITLE THE CRYSTAL STRUCTURE OF ATUAH IN COMPLEX WITH (S)-UREIDOGLYCOLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UREIDOGLYCOLATE HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 50-476; COMPND 5 SYNONYM: ATUAH, ALLANTOATE AMIDOHYDROLASE 2, ATAHH2, UREIDOGLYCOLATE COMPND 6 AMIDOHYDROLASE; COMPND 7 EC: 3.5.3.19; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS, THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: UAH, AAH2, AT5G43600, K9D7.10; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS AMIDASE, HYDANTOINASE, CARBAMOYLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR I.SHIN,S.RHEE REVDAT 2 24-AUG-22 4PXB 1 JRNL REMARK SEQADV LINK REVDAT 1 23-JUL-14 4PXB 0 JRNL AUTH I.SHIN,K.HAN,S.RHEE JRNL TITL STRUCTURAL INSIGHTS INTO THE SUBSTRATE SPECIFICITY OF JRNL TITL 2 (S)-UREIDOGLYCOLATE AMIDOHYDROLASE AND ITS COMPARISON WITH JRNL TITL 3 ALLANTOATE AMIDOHYDROLASE. JRNL REF J.MOL.BIOL. V. 426 3028 2014 JRNL REFN ESSN 1089-8638 JRNL PMID 25020232 JRNL DOI 10.1016/J.JMB.2014.06.017 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.2_869 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 80780 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.480 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.6461 - 4.5819 1.00 5964 151 0.1797 0.2072 REMARK 3 2 4.5819 - 3.6387 1.00 5747 147 0.1423 0.1561 REMARK 3 3 3.6387 - 3.1792 1.00 5693 143 0.1543 0.1815 REMARK 3 4 3.1792 - 2.8888 1.00 5669 144 0.1628 0.1958 REMARK 3 5 2.8888 - 2.6819 1.00 5634 144 0.1565 0.1767 REMARK 3 6 2.6819 - 2.5238 1.00 5620 143 0.1527 0.1800 REMARK 3 7 2.5238 - 2.3975 1.00 5617 142 0.1587 0.1761 REMARK 3 8 2.3975 - 2.2932 1.00 5617 142 0.1581 0.1934 REMARK 3 9 2.2932 - 2.2049 1.00 5581 142 0.1612 0.1817 REMARK 3 10 2.2049 - 2.1288 1.00 5576 142 0.1606 0.1997 REMARK 3 11 2.1288 - 2.0623 1.00 5547 141 0.1653 0.2102 REMARK 3 12 2.0623 - 2.0034 1.00 5556 140 0.1790 0.2133 REMARK 3 13 2.0034 - 1.9506 0.99 5542 141 0.1896 0.2226 REMARK 3 14 1.9506 - 1.9030 0.97 5417 138 0.1942 0.2161 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 42.34 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.38250 REMARK 3 B22 (A**2) : -1.22210 REMARK 3 B33 (A**2) : -5.16040 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6518 REMARK 3 ANGLE : 1.089 8816 REMARK 3 CHIRALITY : 0.073 1026 REMARK 3 PLANARITY : 0.005 1142 REMARK 3 DIHEDRAL : 12.143 2424 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PXB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085335. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; 07-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : NULL; NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : PAL/PLS; PHOTON FACTORY REMARK 200 BEAMLINE : 7A (6B, 6C1); AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934; 0.97923, 0.97940, REMARK 200 0.96417 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270R; ADSC QUANTUM REMARK 200 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80858 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.90 REMARK 200 R MERGE (I) : 0.16400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 13.70 REMARK 200 R MERGE FOR SHELL (I) : 0.68800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.00750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.53050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.76000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.53050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.00750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.76000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 47 REMARK 465 HIS A 48 REMARK 465 MET A 49 REMARK 465 PHE A 50 REMARK 465 GLY A 51 REMARK 465 SER A 52 REMARK 465 ILE A 53 REMARK 465 GLY B 47 REMARK 465 HIS B 48 REMARK 465 MET B 49 REMARK 465 PHE B 50 REMARK 465 GLY B 51 REMARK 465 SER B 52 REMARK 465 ILE B 53 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 985 O HOH B 998 1.69 REMARK 500 O HOH B 1026 O HOH B 1045 1.86 REMARK 500 O HOH A 1012 O HOH A 1025 1.87 REMARK 500 O HOH A 929 O HOH A 953 1.88 REMARK 500 OE2 GLU A 333 O HOH A 1045 1.88 REMARK 500 O HOH A 895 O HOH A 1068 1.91 REMARK 500 O HOH A 1006 O HOH B 607 1.93 REMARK 500 OE1 GLU A 333 O HOH A 1021 1.97 REMARK 500 O HOH B 1006 O HOH B 1009 1.98 REMARK 500 O HOH B 926 O HOH B 1038 2.01 REMARK 500 O HOH A 965 O HOH A 989 2.02 REMARK 500 O HOH B 845 O HOH B 1009 2.02 REMARK 500 O HOH B 1024 O HOH B 1036 2.02 REMARK 500 ND1 HIS A 415 O HOH A 1047 2.04 REMARK 500 O HOH B 790 O HOH B 848 2.05 REMARK 500 O HOH B 995 O HOH B 1028 2.05 REMARK 500 O HOH A 1007 O HOH A 1040 2.05 REMARK 500 OE2 GLU A 262 O HOH A 795 2.07 REMARK 500 O HOH B 932 O HOH B 1001 2.07 REMARK 500 O HOH B 1115 O HOH B 1119 2.07 REMARK 500 O HOH B 1075 O HOH B 1082 2.08 REMARK 500 OE1 GLU A 283 O HOH A 889 2.08 REMARK 500 OE2 GLU B 333 O HOH B 849 2.09 REMARK 500 O HOH A 1021 O HOH A 1032 2.10 REMARK 500 ND2 ASN B 54 O HOH B 1040 2.10 REMARK 500 O HOH B 867 O HOH B 887 2.10 REMARK 500 O HOH B 862 O HOH B 927 2.10 REMARK 500 O HOH A 867 O HOH A 1084 2.11 REMARK 500 O HOH A 794 O HOH A 869 2.12 REMARK 500 OE1 GLU B 283 O HOH B 794 2.13 REMARK 500 NE ARG B 112 O HOH B 1102 2.14 REMARK 500 O HOH B 611 O HOH B 869 2.14 REMARK 500 O HOH A 1056 O HOH A 1058 2.14 REMARK 500 O HOH B 832 O HOH B 1030 2.15 REMARK 500 O HOH B 924 O HOH B 940 2.15 REMARK 500 O HOH B 1102 O HOH B 1106 2.15 REMARK 500 O HOH B 868 O HOH B 1018 2.16 REMARK 500 O HOH B 972 O HOH B 977 2.16 REMARK 500 O HOH B 720 O HOH B 1026 2.16 REMARK 500 NZ LYS A 243 O HOH A 868 2.16 REMARK 500 O HOH B 612 O HOH B 742 2.16 REMARK 500 O HOH B 996 O HOH B 1072 2.18 REMARK 500 OE2 GLU B 264 O HOH B 922 2.18 REMARK 500 OE1 GLU A 222 O HOH A 1031 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 457 O HOH B 1072 3556 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 88 125.36 -36.82 REMARK 500 SER A 137 -160.60 -162.33 REMARK 500 SER A 145 -162.50 -112.88 REMARK 500 VAL A 154 -60.27 -95.68 REMARK 500 SER A 182 138.36 -174.01 REMARK 500 LEU A 237 -0.73 82.92 REMARK 500 LYS A 444 10.22 56.08 REMARK 500 LEU B 88 126.77 -39.35 REMARK 500 TYR B 89 -2.00 72.04 REMARK 500 SER B 137 -159.09 -165.80 REMARK 500 SER B 145 -162.57 -112.12 REMARK 500 VAL B 154 -60.75 -92.25 REMARK 500 SER B 182 139.00 -176.85 REMARK 500 LEU B 237 -1.89 69.06 REMARK 500 LYS B 444 12.78 57.05 REMARK 500 LEU B 475 52.95 -101.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 138 NE2 REMARK 620 2 ASP A 149 OD1 96.9 REMARK 620 3 HIS A 254 NE2 126.5 80.2 REMARK 620 4 UGC A 503 N1 152.0 98.9 79.2 REMARK 620 5 HOH A 610 O 92.0 168.2 88.3 76.2 REMARK 620 6 HOH A 671 O 76.4 101.0 157.1 78.0 88.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 149 OD2 REMARK 620 2 GLU A 184 OE2 98.0 REMARK 620 3 HIS A 448 NE2 89.8 106.8 REMARK 620 4 UGC A 503 O1 103.3 156.6 82.9 REMARK 620 5 UGC A 503 O2 179.0 81.3 89.7 77.5 REMARK 620 6 HOH A 671 O 110.9 76.4 158.7 87.0 69.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 138 NE2 REMARK 620 2 ASP B 149 OD1 96.1 REMARK 620 3 HIS B 254 NE2 122.8 81.6 REMARK 620 4 UGC B 503 N1 153.3 101.3 80.0 REMARK 620 5 HOH B 614 O 92.9 167.7 86.5 73.4 REMARK 620 6 HOH B 662 O 76.1 99.7 161.0 81.2 90.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 149 OD2 REMARK 620 2 GLU B 184 OE2 99.6 REMARK 620 3 HIS B 448 NE2 92.9 107.5 REMARK 620 4 UGC B 503 O1 103.8 152.8 85.2 REMARK 620 5 UGC B 503 O2 178.2 78.6 88.0 77.8 REMARK 620 6 HOH B 662 O 106.0 71.9 161.0 88.3 73.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UGC A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UGC B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PXC RELATED DB: PDB REMARK 900 RELATED ID: 4PXD RELATED DB: PDB REMARK 900 RELATED ID: 4PXE RELATED DB: PDB DBREF 4PXB A 50 476 UNP Q8VXY9 UAH_ARATH 50 476 DBREF 4PXB B 50 476 UNP Q8VXY9 UAH_ARATH 50 476 SEQADV 4PXB GLY A 47 UNP Q8VXY9 EXPRESSION TAG SEQADV 4PXB HIS A 48 UNP Q8VXY9 EXPRESSION TAG SEQADV 4PXB MET A 49 UNP Q8VXY9 EXPRESSION TAG SEQADV 4PXB ALA A 183 UNP Q8VXY9 GLU 183 ENGINEERED MUTATION SEQADV 4PXB GLY B 47 UNP Q8VXY9 EXPRESSION TAG SEQADV 4PXB HIS B 48 UNP Q8VXY9 EXPRESSION TAG SEQADV 4PXB MET B 49 UNP Q8VXY9 EXPRESSION TAG SEQADV 4PXB ALA B 183 UNP Q8VXY9 GLU 183 ENGINEERED MUTATION SEQRES 1 A 430 GLY HIS MET PHE GLY SER ILE ASN LEU ALA SER SER LEU SEQRES 2 A 430 SER VAL ASP ALA PRO GLY LEU GLN ASN GLN ILE ASP GLU SEQRES 3 A 430 LEU SER SER PHE SER ASP ALA PRO SER PRO SER VAL THR SEQRES 4 A 430 ARG VAL LEU TYR THR ASP LYS ASP VAL SER ALA ARG ARG SEQRES 5 A 430 TYR VAL LYS ASN LEU MET ALA LEU ALA GLY LEU THR VAL SEQRES 6 A 430 ARG GLU ASP ALA VAL GLY ASN ILE PHE GLY LYS TRP ASP SEQRES 7 A 430 GLY LEU GLU PRO ASN LEU PRO ALA VAL ALA THR GLY SER SEQRES 8 A 430 HIS ILE ASP ALA ILE PRO TYR SER GLY LYS TYR ASP GLY SEQRES 9 A 430 VAL VAL GLY VAL LEU GLY ALA ILE GLU ALA ILE ASN VAL SEQRES 10 A 430 LEU LYS ARG SER GLY PHE LYS PRO LYS ARG SER LEU GLU SEQRES 11 A 430 ILE ILE LEU PHE THR SER ALA GLU PRO THR ARG PHE GLY SEQRES 12 A 430 ILE SER CYS LEU GLY SER ARG LEU LEU ALA GLY SER LYS SEQRES 13 A 430 GLU LEU ALA GLU ALA LEU LYS THR THR VAL VAL ASP GLY SEQRES 14 A 430 GLN ASN VAL SER PHE ILE GLU ALA ALA ARG SER ALA GLY SEQRES 15 A 430 TYR ALA GLU ASP LYS ASP ASP ASP LEU SER SER VAL PHE SEQRES 16 A 430 LEU LYS LYS GLY SER TYR PHE ALA PHE LEU GLU LEU HIS SEQRES 17 A 430 ILE GLU GLN GLY PRO ILE LEU GLU ASP GLU GLY LEU ASP SEQRES 18 A 430 ILE GLY VAL VAL THR ALA ILE ALA ALA PRO ALA SER LEU SEQRES 19 A 430 LYS VAL GLU PHE GLU GLY ASN GLY GLY HIS ALA GLY ALA SEQRES 20 A 430 VAL LEU MET PRO TYR ARG ASN ASP ALA GLY LEU ALA ALA SEQRES 21 A 430 ALA GLU LEU ALA LEU ALA VAL GLU LYS HIS VAL LEU GLU SEQRES 22 A 430 SER GLU SER ILE ASP THR VAL GLY THR VAL GLY ILE LEU SEQRES 23 A 430 GLU LEU HIS PRO GLY ALA ILE ASN SER ILE PRO SER LYS SEQRES 24 A 430 SER HIS LEU GLU ILE ASP THR ARG ASP ILE ASP GLU ALA SEQRES 25 A 430 ARG ARG ASN THR VAL ILE LYS LYS ILE GLN GLU SER ALA SEQRES 26 A 430 ASN THR ILE ALA LYS LYS ARG LYS VAL LYS LEU SER GLU SEQRES 27 A 430 PHE LYS ILE VAL ASN GLN ASP PRO PRO ALA LEU SER ASP SEQRES 28 A 430 LYS LEU VAL ILE LYS LYS MET ALA GLU ALA ALA THR GLU SEQRES 29 A 430 LEU ASN LEU SER HIS LYS MET MET ILE SER ARG ALA TYR SEQRES 30 A 430 HIS ASP SER LEU PHE MET ALA ARG ILE SER PRO MET GLY SEQRES 31 A 430 MET ILE PHE ILE PRO CYS TYR LYS GLY TYR SER HIS LYS SEQRES 32 A 430 PRO GLU GLU TYR SER SER PRO GLU ASP MET ALA ASN GLY SEQRES 33 A 430 VAL LYS VAL LEU SER LEU THR LEU ALA LYS LEU SER LEU SEQRES 34 A 430 ASP SEQRES 1 B 430 GLY HIS MET PHE GLY SER ILE ASN LEU ALA SER SER LEU SEQRES 2 B 430 SER VAL ASP ALA PRO GLY LEU GLN ASN GLN ILE ASP GLU SEQRES 3 B 430 LEU SER SER PHE SER ASP ALA PRO SER PRO SER VAL THR SEQRES 4 B 430 ARG VAL LEU TYR THR ASP LYS ASP VAL SER ALA ARG ARG SEQRES 5 B 430 TYR VAL LYS ASN LEU MET ALA LEU ALA GLY LEU THR VAL SEQRES 6 B 430 ARG GLU ASP ALA VAL GLY ASN ILE PHE GLY LYS TRP ASP SEQRES 7 B 430 GLY LEU GLU PRO ASN LEU PRO ALA VAL ALA THR GLY SER SEQRES 8 B 430 HIS ILE ASP ALA ILE PRO TYR SER GLY LYS TYR ASP GLY SEQRES 9 B 430 VAL VAL GLY VAL LEU GLY ALA ILE GLU ALA ILE ASN VAL SEQRES 10 B 430 LEU LYS ARG SER GLY PHE LYS PRO LYS ARG SER LEU GLU SEQRES 11 B 430 ILE ILE LEU PHE THR SER ALA GLU PRO THR ARG PHE GLY SEQRES 12 B 430 ILE SER CYS LEU GLY SER ARG LEU LEU ALA GLY SER LYS SEQRES 13 B 430 GLU LEU ALA GLU ALA LEU LYS THR THR VAL VAL ASP GLY SEQRES 14 B 430 GLN ASN VAL SER PHE ILE GLU ALA ALA ARG SER ALA GLY SEQRES 15 B 430 TYR ALA GLU ASP LYS ASP ASP ASP LEU SER SER VAL PHE SEQRES 16 B 430 LEU LYS LYS GLY SER TYR PHE ALA PHE LEU GLU LEU HIS SEQRES 17 B 430 ILE GLU GLN GLY PRO ILE LEU GLU ASP GLU GLY LEU ASP SEQRES 18 B 430 ILE GLY VAL VAL THR ALA ILE ALA ALA PRO ALA SER LEU SEQRES 19 B 430 LYS VAL GLU PHE GLU GLY ASN GLY GLY HIS ALA GLY ALA SEQRES 20 B 430 VAL LEU MET PRO TYR ARG ASN ASP ALA GLY LEU ALA ALA SEQRES 21 B 430 ALA GLU LEU ALA LEU ALA VAL GLU LYS HIS VAL LEU GLU SEQRES 22 B 430 SER GLU SER ILE ASP THR VAL GLY THR VAL GLY ILE LEU SEQRES 23 B 430 GLU LEU HIS PRO GLY ALA ILE ASN SER ILE PRO SER LYS SEQRES 24 B 430 SER HIS LEU GLU ILE ASP THR ARG ASP ILE ASP GLU ALA SEQRES 25 B 430 ARG ARG ASN THR VAL ILE LYS LYS ILE GLN GLU SER ALA SEQRES 26 B 430 ASN THR ILE ALA LYS LYS ARG LYS VAL LYS LEU SER GLU SEQRES 27 B 430 PHE LYS ILE VAL ASN GLN ASP PRO PRO ALA LEU SER ASP SEQRES 28 B 430 LYS LEU VAL ILE LYS LYS MET ALA GLU ALA ALA THR GLU SEQRES 29 B 430 LEU ASN LEU SER HIS LYS MET MET ILE SER ARG ALA TYR SEQRES 30 B 430 HIS ASP SER LEU PHE MET ALA ARG ILE SER PRO MET GLY SEQRES 31 B 430 MET ILE PHE ILE PRO CYS TYR LYS GLY TYR SER HIS LYS SEQRES 32 B 430 PRO GLU GLU TYR SER SER PRO GLU ASP MET ALA ASN GLY SEQRES 33 B 430 VAL LYS VAL LEU SER LEU THR LEU ALA LYS LEU SER LEU SEQRES 34 B 430 ASP HET MN A 501 1 HET MN A 502 1 HET UGC A 503 9 HET MN B 501 1 HET MN B 502 1 HET UGC B 503 9 HETNAM MN MANGANESE (II) ION HETNAM UGC (2S)-(CARBAMOYLAMINO)(HYDROXY)ETHANOIC ACID HETSYN UGC (S)-UREIDOGLYCOLATE FORMUL 3 MN 4(MN 2+) FORMUL 5 UGC 2(C3 H6 N2 O4) FORMUL 9 HOH *1031(H2 O) HELIX 1 1 ASN A 54 LEU A 59 1 6 HELIX 2 2 ASP A 62 SER A 75 1 14 HELIX 3 3 THR A 90 ALA A 107 1 18 HELIX 4 4 GLY A 150 SER A 167 1 18 HELIX 5 5 CYS A 192 ALA A 199 1 8 HELIX 6 6 SER A 201 THR A 211 1 11 HELIX 7 7 SER A 219 ALA A 227 1 9 HELIX 8 8 LEU A 237 PHE A 241 5 5 HELIX 9 9 PRO A 259 GLY A 265 1 7 HELIX 10 10 LEU A 295 ARG A 299 5 5 HELIX 11 11 ASP A 301 GLU A 319 1 19 HELIX 12 12 ASP A 356 LYS A 379 1 24 HELIX 13 13 ASP A 397 LEU A 411 1 15 HELIX 14 14 HIS A 424 ALA A 430 1 7 HELIX 15 15 CYS A 442 TYR A 446 5 5 HELIX 16 16 SER A 455 ASP A 476 1 22 HELIX 17 17 LEU B 55 LEU B 59 1 5 HELIX 18 18 ASP B 62 SER B 75 1 14 HELIX 19 19 THR B 90 ALA B 107 1 18 HELIX 20 20 GLY B 150 SER B 167 1 18 HELIX 21 21 CYS B 192 ALA B 199 1 8 HELIX 22 22 SER B 201 THR B 211 1 11 HELIX 23 23 SER B 219 ALA B 227 1 9 HELIX 24 24 LEU B 237 PHE B 241 5 5 HELIX 25 25 PRO B 259 GLY B 265 1 7 HELIX 26 26 LEU B 295 ARG B 299 5 5 HELIX 27 27 ASP B 301 GLU B 319 1 19 HELIX 28 28 ASP B 356 LYS B 379 1 24 HELIX 29 29 ASP B 397 LEU B 411 1 15 HELIX 30 30 ASP B 425 ALA B 430 1 6 HELIX 31 31 CYS B 442 TYR B 446 5 5 HELIX 32 32 SER B 455 LEU B 475 1 21 SHEET 1 A 2 VAL A 84 ARG A 86 0 SHEET 2 A 2 ALA A 141 SER A 145 -1 O SER A 145 N VAL A 84 SHEET 1 B 8 THR A 110 GLU A 113 0 SHEET 2 B 8 ILE A 119 TRP A 123 -1 O PHE A 120 N ARG A 112 SHEET 3 B 8 LEU A 175 LEU A 179 -1 O LEU A 175 N TRP A 123 SHEET 4 B 8 ALA A 132 SER A 137 1 N THR A 135 O ILE A 178 SHEET 5 B 8 TYR A 247 ILE A 255 1 O ALA A 249 N ALA A 134 SHEET 6 B 8 MET A 435 ILE A 440 1 O ILE A 438 N HIS A 254 SHEET 7 B 8 ILE A 268 ILE A 274 -1 N GLY A 269 O PHE A 439 SHEET 8 B 8 ALA A 394 LEU A 395 -1 O ALA A 394 N ILE A 274 SHEET 1 C 8 THR A 110 GLU A 113 0 SHEET 2 C 8 ILE A 119 TRP A 123 -1 O PHE A 120 N ARG A 112 SHEET 3 C 8 LEU A 175 LEU A 179 -1 O LEU A 175 N TRP A 123 SHEET 4 C 8 ALA A 132 SER A 137 1 N THR A 135 O ILE A 178 SHEET 5 C 8 TYR A 247 ILE A 255 1 O ALA A 249 N ALA A 134 SHEET 6 C 8 MET A 435 ILE A 440 1 O ILE A 438 N HIS A 254 SHEET 7 C 8 ILE A 268 ILE A 274 -1 N GLY A 269 O PHE A 439 SHEET 8 C 8 HIS A 415 SER A 420 1 O SER A 420 N ALA A 273 SHEET 1 D 4 VAL A 326 HIS A 335 0 SHEET 2 D 4 LYS A 345 ASP A 354 -1 O LYS A 345 N HIS A 335 SHEET 3 D 4 ALA A 276 GLU A 285 -1 N VAL A 282 O LEU A 348 SHEET 4 D 4 LYS A 381 GLN A 390 -1 O LYS A 386 N LYS A 281 SHEET 1 E 2 GLY A 289 HIS A 290 0 SHEET 2 E 2 SER A 341 ILE A 342 -1 O ILE A 342 N GLY A 289 SHEET 1 F 2 VAL B 84 ARG B 86 0 SHEET 2 F 2 ALA B 141 SER B 145 -1 O SER B 145 N VAL B 84 SHEET 1 G 8 THR B 110 GLU B 113 0 SHEET 2 G 8 ILE B 119 TRP B 123 -1 O PHE B 120 N ARG B 112 SHEET 3 G 8 LEU B 175 PHE B 180 -1 O LEU B 179 N ILE B 119 SHEET 4 G 8 ALA B 132 HIS B 138 1 N THR B 135 O ILE B 178 SHEET 5 G 8 TYR B 247 ILE B 255 1 O ALA B 249 N ALA B 134 SHEET 6 G 8 MET B 435 ILE B 440 1 O ILE B 438 N HIS B 254 SHEET 7 G 8 ILE B 268 ILE B 274 -1 N GLY B 269 O PHE B 439 SHEET 8 G 8 ALA B 394 LEU B 395 -1 O ALA B 394 N ILE B 274 SHEET 1 H 8 THR B 110 GLU B 113 0 SHEET 2 H 8 ILE B 119 TRP B 123 -1 O PHE B 120 N ARG B 112 SHEET 3 H 8 LEU B 175 PHE B 180 -1 O LEU B 179 N ILE B 119 SHEET 4 H 8 ALA B 132 HIS B 138 1 N THR B 135 O ILE B 178 SHEET 5 H 8 TYR B 247 ILE B 255 1 O ALA B 249 N ALA B 134 SHEET 6 H 8 MET B 435 ILE B 440 1 O ILE B 438 N HIS B 254 SHEET 7 H 8 ILE B 268 ILE B 274 -1 N GLY B 269 O PHE B 439 SHEET 8 H 8 HIS B 415 SER B 420 1 O SER B 420 N ALA B 273 SHEET 1 I 4 VAL B 326 HIS B 335 0 SHEET 2 I 4 LYS B 345 ASP B 354 -1 O ASP B 351 N THR B 328 SHEET 3 I 4 ALA B 276 GLU B 285 -1 N VAL B 282 O LEU B 348 SHEET 4 I 4 LYS B 381 GLN B 390 -1 O LYS B 386 N LYS B 281 SHEET 1 J 2 GLY B 289 HIS B 290 0 SHEET 2 J 2 SER B 341 ILE B 342 -1 O ILE B 342 N GLY B 289 LINK NE2 HIS A 138 MN MN A 501 1555 1555 2.33 LINK OD1 ASP A 149 MN MN A 501 1555 1555 2.23 LINK OD2 ASP A 149 MN MN A 502 1555 1555 2.22 LINK OE2 GLU A 184 MN MN A 502 1555 1555 2.27 LINK NE2 HIS A 254 MN MN A 501 1555 1555 2.35 LINK NE2 HIS A 448 MN MN A 502 1555 1555 2.31 LINK MN MN A 501 N1 UGC A 503 1555 1555 2.72 LINK MN MN A 501 O HOH A 610 1555 1555 2.32 LINK MN MN A 501 O HOH A 671 1555 1555 2.54 LINK MN MN A 502 O1 UGC A 503 1555 1555 2.56 LINK MN MN A 502 O2 UGC A 503 1555 1555 2.58 LINK MN MN A 502 O HOH A 671 1555 1555 2.40 LINK NE2 HIS B 138 MN MN B 501 1555 1555 2.32 LINK OD1 ASP B 149 MN MN B 501 1555 1555 2.21 LINK OD2 ASP B 149 MN MN B 502 1555 1555 2.24 LINK OE2 GLU B 184 MN MN B 502 1555 1555 2.19 LINK NE2 HIS B 254 MN MN B 501 1555 1555 2.36 LINK NE2 HIS B 448 MN MN B 502 1555 1555 2.35 LINK MN MN B 501 N1 UGC B 503 1555 1555 2.76 LINK MN MN B 501 O HOH B 614 1555 1555 2.24 LINK MN MN B 501 O HOH B 662 1555 1555 2.40 LINK MN MN B 502 O1 UGC B 503 1555 1555 2.48 LINK MN MN B 502 O2 UGC B 503 1555 1555 2.66 LINK MN MN B 502 O HOH B 662 1555 1555 2.42 CISPEP 1 SER A 81 PRO A 82 0 6.69 CISPEP 2 HIS A 335 PRO A 336 0 6.62 CISPEP 3 SER B 81 PRO B 82 0 7.63 CISPEP 4 HIS B 335 PRO B 336 0 4.62 SITE 1 AC1 6 HIS A 138 ASP A 149 HIS A 254 UGC A 503 SITE 2 AC1 6 HOH A 610 HOH A 671 SITE 1 AC2 5 ASP A 149 GLU A 184 HIS A 448 UGC A 503 SITE 2 AC2 5 HOH A 671 SITE 1 AC3 13 GLU A 184 HIS A 254 GLN A 257 ARG A 353 SITE 2 AC3 13 ALA A 422 TYR A 423 HIS A 424 HIS A 448 SITE 3 AC3 13 MN A 501 MN A 502 HOH A 671 HIS B 290 SITE 4 AC3 13 ASN B 340 SITE 1 AC4 6 HIS B 138 ASP B 149 HIS B 254 UGC B 503 SITE 2 AC4 6 HOH B 614 HOH B 662 SITE 1 AC5 5 ASP B 149 GLU B 184 HIS B 448 UGC B 503 SITE 2 AC5 5 HOH B 662 SITE 1 AC6 14 HIS A 290 ASN A 340 GLU B 184 HIS B 254 SITE 2 AC6 14 GLN B 257 ARG B 353 ALA B 422 TYR B 423 SITE 3 AC6 14 HIS B 424 HIS B 448 MN B 501 MN B 502 SITE 4 AC6 14 HOH B 614 HOH B 662 CRYST1 70.015 89.520 163.061 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014283 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011171 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006133 0.00000