HEADER OXIDOREDUCTASE 24-MAR-14 4PXN TITLE STRUCTURE OF ZM ALDH7 IN COMPLEX WITH NAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZEA MAYS; SOURCE 3 ORGANISM_COMMON: MAIZE; SOURCE 4 ORGANISM_TAXID: 4577; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCDFDUET KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MORERA,A.VIGOUROUX,D.KOPECNY REVDAT 3 20-SEP-23 4PXN 1 REMARK SEQADV REVDAT 2 20-MAY-15 4PXN 1 JRNL REVDAT 1 18-MAR-15 4PXN 0 JRNL AUTH R.KONCITIKOVA,A.VIGOUROUX,M.KOPECNA,T.ANDREE,J.BARTOS, JRNL AUTH 2 M.SEBELA,S.MORERA,D.KOPECNY JRNL TITL ROLE AND STRUCTURAL CHARACTERIZATION OF PLANT ALDEHYDE JRNL TITL 2 DEHYDROGENASES FROM FAMILY 2 AND FAMILY 7. JRNL REF BIOCHEM.J. V. 468 109 2015 JRNL REFN ISSN 0264-6021 JRNL PMID 25734422 JRNL DOI 10.1042/BJ20150009 REMARK 2 REMARK 2 RESOLUTION. 2.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 26124 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1306 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 13 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.94 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.06 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.16 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2719 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2838 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2583 REMARK 3 BIN R VALUE (WORKING SET) : 0.2813 REMARK 3 BIN FREE R VALUE : 0.3292 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 136 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7484 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 94.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 16.96860 REMARK 3 B22 (A**2) : -11.89200 REMARK 3 B33 (A**2) : -5.07660 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.425 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7744 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 10526 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2666 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 178 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1172 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 7744 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 1046 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 8935 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.13 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.60 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.97 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|6 - A|503 A|601 - A|601 A|701 - A|704 } REMARK 3 ORIGIN FOR THE GROUP (A): -60.2146 179.5960 40.9471 REMARK 3 T TENSOR REMARK 3 T11: -0.3859 T22: -0.4824 REMARK 3 T33: -0.0854 T12: -0.0481 REMARK 3 T13: 0.0272 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 1.6327 L22: 1.7045 REMARK 3 L33: 0.8260 L12: -0.6062 REMARK 3 L13: 0.1473 L23: -0.1871 REMARK 3 S TENSOR REMARK 3 S11: -0.0371 S12: 0.0603 S13: 0.1836 REMARK 3 S21: 0.3214 S22: 0.0323 S23: 0.2720 REMARK 3 S31: -0.0579 S32: -0.1179 S33: 0.0048 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|6 - B|503 B|601 - B|601 B|701 - B|704 } REMARK 3 ORIGIN FOR THE GROUP (A): -20.655 166.187 28.823 REMARK 3 T TENSOR REMARK 3 T11: 0.3237 T22: 0.2318 REMARK 3 T33: 0.1532 T12: -0.2418 REMARK 3 T13: -0.0603 T23: 0.2154 REMARK 3 L TENSOR REMARK 3 L11: 0.9399 L22: 0.1928 REMARK 3 L33: 0.3375 L12: 0.0477 REMARK 3 L13: -0.2703 L23: -0.0564 REMARK 3 S TENSOR REMARK 3 S11: -0.0174 S12: 0.4689 S13: 0.2659 REMARK 3 S21: -0.0224 S22: 0.1199 S23: 0.1133 REMARK 3 S31: 0.2010 S32: -0.1909 S33: -0.1025 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PXN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000085347. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26136 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.940 REMARK 200 RESOLUTION RANGE LOW (A) : 35.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2JG7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD AND 0.2 M AMMONIUM PHOSPHATE, PH REMARK 280 7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.61000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.31000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 81.24500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 94.31000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.61000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 81.24500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.61000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 81.24500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 94.31000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 81.24500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.61000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 94.31000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 63880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -106.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 324.98000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 94.31000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -15 REMARK 465 GLY A -14 REMARK 465 SER A -13 REMARK 465 SER A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 SER A -5 REMARK 465 GLN A -4 REMARK 465 ASP A -3 REMARK 465 PRO A -2 REMARK 465 ASN A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ALA A 3 REMARK 465 PHE A 4 REMARK 465 ALA A 5 REMARK 465 GLN A 504 REMARK 465 GLY A 505 REMARK 465 ILE A 506 REMARK 465 ASN A 507 REMARK 465 PHE A 508 REMARK 465 GLY A 509 REMARK 465 MET B -15 REMARK 465 GLY B -14 REMARK 465 SER B -13 REMARK 465 SER B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 SER B -5 REMARK 465 GLN B -4 REMARK 465 ASP B -3 REMARK 465 PRO B -2 REMARK 465 ASN B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 ALA B 3 REMARK 465 PHE B 4 REMARK 465 ALA B 5 REMARK 465 GLN B 504 REMARK 465 GLY B 505 REMARK 465 ILE B 506 REMARK 465 ASN B 507 REMARK 465 PHE B 508 REMARK 465 GLY B 509 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 9 -152.93 61.73 REMARK 500 GLN A 10 -54.06 13.61 REMARK 500 PRO A 168 1.75 -69.75 REMARK 500 CYS A 169 -25.24 -151.25 REMARK 500 ASN A 271 57.35 -106.25 REMARK 500 GLN A 299 36.76 -99.94 REMARK 500 TYR A 314 -73.74 -32.09 REMARK 500 ASN A 378 59.00 -90.66 REMARK 500 LEU A 425 -77.38 -86.43 REMARK 500 LYS A 470 -114.23 57.02 REMARK 500 ALA A 478 -123.12 58.94 REMARK 500 SER A 480 -129.54 69.60 REMARK 500 HIS B 9 -79.32 88.34 REMARK 500 ALA B 26 130.27 -174.75 REMARK 500 LEU B 111 -51.94 -28.88 REMARK 500 PRO B 168 1.36 -69.82 REMARK 500 CYS B 169 -24.89 -151.07 REMARK 500 ASN B 271 53.31 -116.69 REMARK 500 GLN B 299 36.54 -99.84 REMARK 500 TYR B 314 -73.66 -32.03 REMARK 500 GLU B 374 98.72 -68.55 REMARK 500 GLU B 396 -168.46 -72.44 REMARK 500 LEU B 425 -72.02 -88.77 REMARK 500 LYS B 470 -114.52 57.15 REMARK 500 ALA B 478 -122.89 58.66 REMARK 500 SER B 480 -129.58 70.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PXL RELATED DB: PDB REMARK 900 RELATED ID: 4PZ2 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CORRECT SEQUENCE HAS BEEN DEPOSITED IN GENBANK, KJ004513. THE REMARK 999 SEQUENCE COMES FROM A CULTIVAR WHICH IS DIFFERENT FROM THAT WHICH REMARK 999 HAS GIVEN THE SEQUENCE IN THE DATABASE DBREF 4PXN A 1 509 UNP C0PHD8 C0PHD8_MAIZE 1 509 DBREF 4PXN B 1 509 UNP C0PHD8 C0PHD8_MAIZE 1 509 SEQADV 4PXN MET A -15 UNP C0PHD8 INITIATING METHIONINE SEQADV 4PXN GLY A -14 UNP C0PHD8 EXPRESSION TAG SEQADV 4PXN SER A -13 UNP C0PHD8 EXPRESSION TAG SEQADV 4PXN SER A -12 UNP C0PHD8 EXPRESSION TAG SEQADV 4PXN HIS A -11 UNP C0PHD8 EXPRESSION TAG SEQADV 4PXN HIS A -10 UNP C0PHD8 EXPRESSION TAG SEQADV 4PXN HIS A -9 UNP C0PHD8 EXPRESSION TAG SEQADV 4PXN HIS A -8 UNP C0PHD8 EXPRESSION TAG SEQADV 4PXN HIS A -7 UNP C0PHD8 EXPRESSION TAG SEQADV 4PXN HIS A -6 UNP C0PHD8 EXPRESSION TAG SEQADV 4PXN SER A -5 UNP C0PHD8 EXPRESSION TAG SEQADV 4PXN GLN A -4 UNP C0PHD8 EXPRESSION TAG SEQADV 4PXN ASP A -3 UNP C0PHD8 EXPRESSION TAG SEQADV 4PXN PRO A -2 UNP C0PHD8 EXPRESSION TAG SEQADV 4PXN ASN A -1 UNP C0PHD8 EXPRESSION TAG SEQADV 4PXN SER A 0 UNP C0PHD8 EXPRESSION TAG SEQADV 4PXN THR A 410 UNP C0PHD8 SER 410 SEE REMARK 999 SEQADV 4PXN MET B -15 UNP C0PHD8 INITIATING METHIONINE SEQADV 4PXN GLY B -14 UNP C0PHD8 EXPRESSION TAG SEQADV 4PXN SER B -13 UNP C0PHD8 EXPRESSION TAG SEQADV 4PXN SER B -12 UNP C0PHD8 EXPRESSION TAG SEQADV 4PXN HIS B -11 UNP C0PHD8 EXPRESSION TAG SEQADV 4PXN HIS B -10 UNP C0PHD8 EXPRESSION TAG SEQADV 4PXN HIS B -9 UNP C0PHD8 EXPRESSION TAG SEQADV 4PXN HIS B -8 UNP C0PHD8 EXPRESSION TAG SEQADV 4PXN HIS B -7 UNP C0PHD8 EXPRESSION TAG SEQADV 4PXN HIS B -6 UNP C0PHD8 EXPRESSION TAG SEQADV 4PXN SER B -5 UNP C0PHD8 EXPRESSION TAG SEQADV 4PXN GLN B -4 UNP C0PHD8 EXPRESSION TAG SEQADV 4PXN ASP B -3 UNP C0PHD8 EXPRESSION TAG SEQADV 4PXN PRO B -2 UNP C0PHD8 EXPRESSION TAG SEQADV 4PXN ASN B -1 UNP C0PHD8 EXPRESSION TAG SEQADV 4PXN SER B 0 UNP C0PHD8 EXPRESSION TAG SEQADV 4PXN THR B 410 UNP C0PHD8 SER 410 SEE REMARK 999 SEQRES 1 A 525 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 525 PRO ASN SER MET GLY ALA PHE ALA LYS GLU GLU HIS GLN SEQRES 3 A 525 PHE LEU ALA GLU LEU GLY LEU ALA GLN ARG ASN PRO GLY SEQRES 4 A 525 ALA PHE ALA CYS GLY ALA TRP GLY GLY SER GLY PRO THR SEQRES 5 A 525 VAL THR SER THR SER PRO THR ASN ASN GLN VAL ILE ALA SEQRES 6 A 525 GLU VAL VAL GLU ALA SER VAL HIS ASP TYR GLU GLU GLY SEQRES 7 A 525 MET ARG ALA CYS PHE ASP ALA ALA LYS THR TRP MET ALA SEQRES 8 A 525 ILE PRO ALA PRO LYS ARG GLY GLU ILE VAL ARG GLN ILE SEQRES 9 A 525 GLY ASP ALA LEU ARG ALA LYS LEU HIS HIS LEU GLY ARG SEQRES 10 A 525 LEU VAL SER LEU GLU MET GLY LYS ILE LEU PRO GLU GLY SEQRES 11 A 525 ILE GLY GLU VAL GLN GLU ILE ILE ASP MET CYS ASP TYR SEQRES 12 A 525 ALA VAL GLY LEU SER ARG GLN LEU ASN GLY SER ILE ILE SEQRES 13 A 525 PRO SER GLU ARG PRO ASN HIS MET MET MET GLU VAL TRP SEQRES 14 A 525 ASN PRO LEU GLY VAL VAL GLY VAL ILE THR ALA PHE ASN SEQRES 15 A 525 PHE PRO CYS ALA VAL LEU GLY TRP ASN ALA CYS ILE ALA SEQRES 16 A 525 LEU VAL CYS GLY ASN CYS VAL VAL TRP LYS GLY ALA PRO SEQRES 17 A 525 THR THR PRO LEU ILE THR ILE ALA MET THR LYS ILE VAL SEQRES 18 A 525 ALA SER VAL LEU GLU LYS ASN ASN LEU PRO GLY ALA ILE SEQRES 19 A 525 PHE THR SER PHE CYS GLY GLY THR GLU ILE GLY GLN ALA SEQRES 20 A 525 ILE ALA LEU ASP ILE ARG ILE PRO LEU VAL SER PHE THR SEQRES 21 A 525 GLY SER THR ARG ALA GLY LEU MET VAL GLN GLN GLN VAL SEQRES 22 A 525 SER ALA ARG PHE GLY LYS CYS LEU LEU GLU LEU SER GLY SEQRES 23 A 525 ASN ASN ALA ILE ILE VAL MET ASP ASP ALA ASP ILE GLN SEQRES 24 A 525 LEU ALA VAL ARG SER VAL LEU PHE ALA ALA VAL GLY THR SEQRES 25 A 525 ALA GLY GLN ARG CYS THR THR CYS ARG ARG LEU ILE LEU SEQRES 26 A 525 HIS GLU ASN ILE TYR GLN THR PHE LEU ASP GLN LEU VAL SEQRES 27 A 525 GLU VAL TYR LYS GLN VAL ARG ILE GLY ASP PRO LEU GLU SEQRES 28 A 525 LYS GLY THR LEU LEU GLY PRO LEU HIS THR PRO ALA SER SEQRES 29 A 525 LYS GLU ASN PHE LEU LYS GLY ILE GLN THR ILE LYS SER SEQRES 30 A 525 GLN GLY GLY LYS ILE LEU PHE GLY GLY SER ALA ILE GLU SEQRES 31 A 525 SER GLU GLY ASN PHE VAL GLN PRO THR ILE VAL GLU ILE SEQRES 32 A 525 THR PRO SER ALA PRO VAL VAL LYS GLU GLU LEU PHE GLY SEQRES 33 A 525 PRO VAL LEU TYR VAL MET LYS PHE GLN THR LEU LYS GLU SEQRES 34 A 525 ALA ILE GLU ILE ASN ASN SER VAL PRO GLN GLY LEU SER SEQRES 35 A 525 SER SER ILE PHE THR LYS ARG PRO ASP ILE ILE PHE LYS SEQRES 36 A 525 TRP LEU GLY PRO HIS GLY SER ASP CYS GLY ILE VAL ASN SEQRES 37 A 525 VAL ASN ILE PRO THR ASN GLY ALA GLU ILE GLY GLY ALA SEQRES 38 A 525 PHE GLY GLY GLU LYS ALA THR GLY GLY GLY ARG GLU ALA SEQRES 39 A 525 GLY SER ASP SER TRP LYS GLN TYR MET ARG ARG ALA THR SEQRES 40 A 525 CYS THR ILE ASN TYR GLY SER GLU LEU PRO LEU ALA GLN SEQRES 41 A 525 GLY ILE ASN PHE GLY SEQRES 1 B 525 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 B 525 PRO ASN SER MET GLY ALA PHE ALA LYS GLU GLU HIS GLN SEQRES 3 B 525 PHE LEU ALA GLU LEU GLY LEU ALA GLN ARG ASN PRO GLY SEQRES 4 B 525 ALA PHE ALA CYS GLY ALA TRP GLY GLY SER GLY PRO THR SEQRES 5 B 525 VAL THR SER THR SER PRO THR ASN ASN GLN VAL ILE ALA SEQRES 6 B 525 GLU VAL VAL GLU ALA SER VAL HIS ASP TYR GLU GLU GLY SEQRES 7 B 525 MET ARG ALA CYS PHE ASP ALA ALA LYS THR TRP MET ALA SEQRES 8 B 525 ILE PRO ALA PRO LYS ARG GLY GLU ILE VAL ARG GLN ILE SEQRES 9 B 525 GLY ASP ALA LEU ARG ALA LYS LEU HIS HIS LEU GLY ARG SEQRES 10 B 525 LEU VAL SER LEU GLU MET GLY LYS ILE LEU PRO GLU GLY SEQRES 11 B 525 ILE GLY GLU VAL GLN GLU ILE ILE ASP MET CYS ASP TYR SEQRES 12 B 525 ALA VAL GLY LEU SER ARG GLN LEU ASN GLY SER ILE ILE SEQRES 13 B 525 PRO SER GLU ARG PRO ASN HIS MET MET MET GLU VAL TRP SEQRES 14 B 525 ASN PRO LEU GLY VAL VAL GLY VAL ILE THR ALA PHE ASN SEQRES 15 B 525 PHE PRO CYS ALA VAL LEU GLY TRP ASN ALA CYS ILE ALA SEQRES 16 B 525 LEU VAL CYS GLY ASN CYS VAL VAL TRP LYS GLY ALA PRO SEQRES 17 B 525 THR THR PRO LEU ILE THR ILE ALA MET THR LYS ILE VAL SEQRES 18 B 525 ALA SER VAL LEU GLU LYS ASN ASN LEU PRO GLY ALA ILE SEQRES 19 B 525 PHE THR SER PHE CYS GLY GLY THR GLU ILE GLY GLN ALA SEQRES 20 B 525 ILE ALA LEU ASP ILE ARG ILE PRO LEU VAL SER PHE THR SEQRES 21 B 525 GLY SER THR ARG ALA GLY LEU MET VAL GLN GLN GLN VAL SEQRES 22 B 525 SER ALA ARG PHE GLY LYS CYS LEU LEU GLU LEU SER GLY SEQRES 23 B 525 ASN ASN ALA ILE ILE VAL MET ASP ASP ALA ASP ILE GLN SEQRES 24 B 525 LEU ALA VAL ARG SER VAL LEU PHE ALA ALA VAL GLY THR SEQRES 25 B 525 ALA GLY GLN ARG CYS THR THR CYS ARG ARG LEU ILE LEU SEQRES 26 B 525 HIS GLU ASN ILE TYR GLN THR PHE LEU ASP GLN LEU VAL SEQRES 27 B 525 GLU VAL TYR LYS GLN VAL ARG ILE GLY ASP PRO LEU GLU SEQRES 28 B 525 LYS GLY THR LEU LEU GLY PRO LEU HIS THR PRO ALA SER SEQRES 29 B 525 LYS GLU ASN PHE LEU LYS GLY ILE GLN THR ILE LYS SER SEQRES 30 B 525 GLN GLY GLY LYS ILE LEU PHE GLY GLY SER ALA ILE GLU SEQRES 31 B 525 SER GLU GLY ASN PHE VAL GLN PRO THR ILE VAL GLU ILE SEQRES 32 B 525 THR PRO SER ALA PRO VAL VAL LYS GLU GLU LEU PHE GLY SEQRES 33 B 525 PRO VAL LEU TYR VAL MET LYS PHE GLN THR LEU LYS GLU SEQRES 34 B 525 ALA ILE GLU ILE ASN ASN SER VAL PRO GLN GLY LEU SER SEQRES 35 B 525 SER SER ILE PHE THR LYS ARG PRO ASP ILE ILE PHE LYS SEQRES 36 B 525 TRP LEU GLY PRO HIS GLY SER ASP CYS GLY ILE VAL ASN SEQRES 37 B 525 VAL ASN ILE PRO THR ASN GLY ALA GLU ILE GLY GLY ALA SEQRES 38 B 525 PHE GLY GLY GLU LYS ALA THR GLY GLY GLY ARG GLU ALA SEQRES 39 B 525 GLY SER ASP SER TRP LYS GLN TYR MET ARG ARG ALA THR SEQRES 40 B 525 CYS THR ILE ASN TYR GLY SER GLU LEU PRO LEU ALA GLN SEQRES 41 B 525 GLY ILE ASN PHE GLY HET NAD A 601 44 HET NAD B 601 44 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 5 HOH *8(H2 O) HELIX 1 1 LEU A 12 GLY A 16 5 5 HELIX 2 2 SER A 55 ALA A 75 1 21 HELIX 3 3 PRO A 77 LYS A 95 1 19 HELIX 4 4 LYS A 95 GLY A 108 1 14 HELIX 5 5 LEU A 111 ARG A 133 1 23 HELIX 6 6 CYS A 169 CYS A 182 1 14 HELIX 7 7 THR A 194 ASN A 212 1 19 HELIX 8 8 PRO A 215 ALA A 217 5 3 HELIX 9 9 GLY A 225 ASP A 235 1 11 HELIX 10 10 SER A 246 ARG A 260 1 15 HELIX 11 11 ASP A 281 GLY A 295 1 15 HELIX 12 12 THR A 296 GLN A 299 5 4 HELIX 13 13 ILE A 313 LYS A 326 1 14 HELIX 14 14 THR A 345 GLN A 362 1 18 HELIX 15 15 ALA A 391 GLU A 396 5 6 HELIX 16 16 THR A 410 VAL A 421 1 12 HELIX 17 17 ARG A 433 LEU A 441 1 9 HELIX 18 18 ASP A 481 GLN A 485 5 5 HELIX 19 19 HIS B 9 LEU B 15 1 7 HELIX 20 20 SER B 55 ALA B 75 1 21 HELIX 21 21 PRO B 77 LYS B 95 1 19 HELIX 22 22 LYS B 95 GLY B 108 1 14 HELIX 23 23 LEU B 111 ARG B 133 1 23 HELIX 24 24 CYS B 169 CYS B 182 1 14 HELIX 25 25 THR B 194 ASN B 212 1 19 HELIX 26 26 PRO B 215 ALA B 217 5 3 HELIX 27 27 GLY B 225 ASP B 235 1 11 HELIX 28 28 SER B 246 ARG B 260 1 15 HELIX 29 29 ASP B 281 GLY B 295 1 15 HELIX 30 30 THR B 296 GLN B 299 5 4 HELIX 31 31 ILE B 313 LYS B 326 1 14 HELIX 32 32 THR B 345 GLN B 362 1 18 HELIX 33 33 ALA B 391 GLU B 396 1 6 HELIX 34 34 THR B 410 VAL B 421 1 12 HELIX 35 35 ARG B 433 LEU B 441 1 9 HELIX 36 36 ASP B 481 GLN B 485 5 5 SHEET 1 A 3 ARG A 20 PRO A 22 0 SHEET 2 A 3 VAL A 47 VAL A 52 1 O VAL A 52 N ASN A 21 SHEET 3 A 3 THR A 36 THR A 40 -1 N SER A 39 O ILE A 48 SHEET 1 B 7 ALA A 29 GLY A 31 0 SHEET 2 B 7 ALA A 24 ALA A 26 -1 N ALA A 24 O GLY A 31 SHEET 3 B 7 PHE A 219 PHE A 222 -1 O SER A 221 N PHE A 25 SHEET 4 B 7 CYS A 185 LYS A 189 1 N TRP A 188 O PHE A 222 SHEET 5 B 7 VAL A 158 ILE A 162 1 N VAL A 159 O CYS A 185 SHEET 6 B 7 LEU A 240 THR A 244 1 O SER A 242 N GLY A 160 SHEET 7 B 7 LYS A 263 GLU A 267 1 O LEU A 265 N PHE A 243 SHEET 1 C 3 SER A 138 ILE A 140 0 SHEET 2 C 3 HIS A 147 PRO A 155 -1 O GLU A 151 N SER A 138 SHEET 3 C 3 MET A 487 ASN A 495 -1 O CYS A 492 N MET A 150 SHEET 1 D 7 LYS A 365 PHE A 368 0 SHEET 2 D 7 THR A 383 GLU A 386 -1 O GLU A 386 N LYS A 365 SHEET 3 D 7 VAL A 402 PHE A 408 1 O VAL A 405 N VAL A 385 SHEET 4 D 7 CYS A 304 HIS A 310 1 N LEU A 307 O TYR A 404 SHEET 5 D 7 ASN A 272 VAL A 276 1 N ILE A 274 O ILE A 308 SHEET 6 D 7 SER A 426 PHE A 430 1 O SER A 428 N ILE A 275 SHEET 7 D 7 ILE A 450 VAL A 453 1 O ASN A 452 N SER A 427 SHEET 1 E 2 GLN A 423 GLY A 424 0 SHEET 2 E 2 GLU A 469 LYS A 470 -1 O GLU A 469 N GLY A 424 SHEET 1 F 2 ALA A 465 PHE A 466 0 SHEET 2 F 2 GLU A 477 ALA A 478 -1 O GLU A 477 N PHE A 466 SHEET 1 G 3 ARG B 20 PRO B 22 0 SHEET 2 G 3 VAL B 47 VAL B 52 1 O VAL B 52 N ASN B 21 SHEET 3 G 3 THR B 36 THR B 40 -1 N SER B 39 O ILE B 48 SHEET 1 H 7 TRP B 30 GLY B 31 0 SHEET 2 H 7 ALA B 24 PHE B 25 -1 N ALA B 24 O GLY B 31 SHEET 3 H 7 PHE B 219 PHE B 222 -1 O SER B 221 N PHE B 25 SHEET 4 H 7 CYS B 185 LYS B 189 1 N TRP B 188 O PHE B 222 SHEET 5 H 7 VAL B 158 ILE B 162 1 N VAL B 159 O CYS B 185 SHEET 6 H 7 LEU B 240 THR B 244 1 O SER B 242 N GLY B 160 SHEET 7 H 7 LYS B 263 GLU B 267 1 O LEU B 265 N PHE B 243 SHEET 1 I 3 SER B 138 ILE B 140 0 SHEET 2 I 3 HIS B 147 PRO B 155 -1 O GLU B 151 N SER B 138 SHEET 3 I 3 MET B 487 ASN B 495 -1 O CYS B 492 N MET B 150 SHEET 1 J 7 LYS B 365 PHE B 368 0 SHEET 2 J 7 THR B 383 GLU B 386 -1 O GLU B 386 N LYS B 365 SHEET 3 J 7 VAL B 402 PHE B 408 1 O VAL B 405 N VAL B 385 SHEET 4 J 7 CYS B 304 HIS B 310 1 N LEU B 307 O TYR B 404 SHEET 5 J 7 ASN B 272 VAL B 276 1 N ILE B 274 O ILE B 308 SHEET 6 J 7 SER B 426 PHE B 430 1 O SER B 428 N ILE B 275 SHEET 7 J 7 ILE B 450 VAL B 453 1 O ASN B 452 N SER B 427 SHEET 1 K 2 GLN B 423 GLY B 424 0 SHEET 2 K 2 GLU B 469 LYS B 470 -1 O GLU B 469 N GLY B 424 SHEET 1 L 2 ALA B 465 PHE B 466 0 SHEET 2 L 2 GLU B 477 ALA B 478 -1 O GLU B 477 N PHE B 466 CISPEP 1 GLU A 7 GLU A 8 0 2.34 CISPEP 2 GLU A 8 HIS A 9 0 6.90 CISPEP 3 GLU B 7 GLU B 8 0 1.49 CISPEP 4 GLU B 8 HIS B 9 0 -1.07 CISPEP 5 ALA B 26 CYS B 27 0 5.05 SITE 1 AC1 26 ILE A 162 THR A 163 ALA A 164 PHE A 165 SITE 2 AC1 26 ASN A 166 LYS A 189 GLY A 190 ALA A 191 SITE 3 AC1 26 PRO A 192 THR A 226 GLY A 229 GLN A 230 SITE 4 AC1 26 PHE A 243 THR A 244 GLY A 245 SER A 246 SITE 5 AC1 26 ALA A 249 MET A 252 VAL A 253 GLU A 267 SITE 6 AC1 26 LEU A 268 SER A 269 CYS A 301 GLU A 397 SITE 7 AC1 26 PHE A 399 PHE A 466 SITE 1 AC2 25 ILE B 162 THR B 163 ALA B 164 PHE B 165 SITE 2 AC2 25 ASN B 166 LYS B 189 GLY B 190 ALA B 191 SITE 3 AC2 25 THR B 226 GLY B 229 GLN B 230 PHE B 243 SITE 4 AC2 25 THR B 244 GLY B 245 SER B 246 ALA B 249 SITE 5 AC2 25 MET B 252 VAL B 253 GLU B 267 LEU B 268 SITE 6 AC2 25 SER B 269 CYS B 301 GLU B 397 PHE B 399 SITE 7 AC2 25 PHE B 466 CRYST1 79.220 162.490 188.620 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012623 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006154 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005302 0.00000