HEADER TRANSFERASE 24-MAR-14 4PXO TITLE CRYSTAL STRUCTURE OF MALEYLACETOACETATE ISOMERASE FROM METHYLOBACTERIU TITLE 2 EXTORQUENS AM1 WITH BOUND MALONATE AND GSH (TARGET EFI-507068) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALEYLACETOACETATE ISOMERASE (GLUTATHIONE S-TRANSFERASE); COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.5.1.18, 5.2.1.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOBACTERIUM EXTORQUENS; SOURCE 3 ORGANISM_TAXID: 272630; SOURCE 4 STRAIN: ATCC 14718 / DSM 1338 / AM1; SOURCE 5 GENE: MAIA, MEXAM1_META1P2830; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS GLUTATHIONE S-TRANSFERASE ZETA, ENZYME FUNCTION INITIATIVE, EFI, KEYWDS 2 STRUCTURAL GENOMICS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,R.TORO,R.BHOSLE,B.HILLERICH,R.D.SEIDEL,E.WASHINGTON, AUTHOR 2 A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS,H.J.IMKER,N.AL OBAIDI, AUTHOR 3 M.STEAD,J.LOVE,J.A.GERLT,R.N.ARMSTRONG,S.C.ALMO,ENZYME FUNCTION AUTHOR 4 INITIATIVE (EFI) REVDAT 4 20-SEP-23 4PXO 1 REMARK SEQADV REVDAT 3 24-JAN-18 4PXO 1 AUTHOR JRNL REVDAT 2 29-APR-15 4PXO 1 HETSYN REVDAT 1 09-APR-14 4PXO 0 JRNL AUTH Y.PATSKOVSKY,R.TORO,R.BHOSLE,B.HILLERICH,R.D.SEIDEL, JRNL AUTH 2 E.WASHINGTON,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS, JRNL AUTH 3 H.J.IMKER,N.AL OBAIDI,M.STEAD,J.LOVE,J.A.GERLT, JRNL AUTH 4 R.N.ARMSTRONG,S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) JRNL TITL CRYSTAL STRUCTURE OF GLUTATHIONE S-TRANSFERASE ZETA FROM JRNL TITL 2 METHYLOBACTERIUM EXTORQUENS (TARGET EFI-507068) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 59371 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1824 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4273 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 145 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3324 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 395 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.68000 REMARK 3 B22 (A**2) : 0.68000 REMARK 3 B33 (A**2) : -2.22000 REMARK 3 B12 (A**2) : 0.34000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.078 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.081 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.739 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3567 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3463 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4842 ; 1.195 ; 2.007 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7941 ; 0.783 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 446 ; 4.962 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 155 ;29.855 ;22.258 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 556 ;12.062 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;18.984 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 542 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4058 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 829 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1736 ; 4.031 ; 3.281 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1735 ; 3.833 ; 3.274 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2171 ; 4.359 ; 4.378 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2172 ; 4.442 ; 4.382 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1831 ; 6.090 ; 3.948 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1831 ; 6.086 ; 3.948 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2663 ; 6.835 ; 5.053 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4313 ; 9.116 ;13.484 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4314 ; 9.118 ;13.489 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 214 REMARK 3 ORIGIN FOR THE GROUP (A): 9.6287 24.2633 -7.0338 REMARK 3 T TENSOR REMARK 3 T11: 0.0341 T22: 0.0092 REMARK 3 T33: 0.0178 T12: 0.0009 REMARK 3 T13: -0.0061 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 1.4901 L22: 1.3828 REMARK 3 L33: 1.1450 L12: -0.3376 REMARK 3 L13: 0.7216 L23: 0.1351 REMARK 3 S TENSOR REMARK 3 S11: 0.0066 S12: -0.0209 S13: -0.0672 REMARK 3 S21: -0.0647 S22: -0.0499 S23: 0.0642 REMARK 3 S31: 0.0822 S32: -0.0814 S33: 0.0432 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 214 REMARK 3 ORIGIN FOR THE GROUP (A): 10.2268 40.9809 6.8532 REMARK 3 T TENSOR REMARK 3 T11: 0.0341 T22: 0.0216 REMARK 3 T33: 0.0536 T12: 0.0142 REMARK 3 T13: -0.0185 T23: -0.0330 REMARK 3 L TENSOR REMARK 3 L11: 1.3545 L22: 1.6402 REMARK 3 L33: 1.1644 L12: 0.0246 REMARK 3 L13: 0.8070 L23: 0.2472 REMARK 3 S TENSOR REMARK 3 S11: -0.0502 S12: -0.0983 S13: 0.1918 REMARK 3 S21: -0.0130 S22: -0.0845 S23: 0.0861 REMARK 3 S31: -0.1679 S32: -0.0893 S33: 0.1347 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4PXO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000085348. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61218 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 14.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10100 REMARK 200 FOR THE DATA SET : 23.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4PX1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10 MM TRIS, 150 MM NACL, 5% REMARK 280 GLYCEROL, 5 MM DTT); RESERVOIR (0.1 M HEPES-NAOH, PH 7.0, 1.1M REMARK 280 SODIUM MALONATE, 0.5% (V/V) JEFFAMINE ED-2001 (MCSG2 B10), 10 MM REMARK 280 GSH; CRYOPROTECTION: (RESERVOIR), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K, PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 123.57800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.78900 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 92.68350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 30.89450 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 154.47250 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 123.57800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 61.78900 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 30.89450 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 92.68350 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 154.47250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 461 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 SER A -15 REMARK 465 SER A -14 REMARK 465 GLY A -13 REMARK 465 VAL A -12 REMARK 465 ASP A -11 REMARK 465 LEU A -10 REMARK 465 GLY A -9 REMARK 465 THR A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 SER A 215 REMARK 465 MET B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 SER B -15 REMARK 465 SER B -14 REMARK 465 GLY B -13 REMARK 465 VAL B -12 REMARK 465 ASP B -11 REMARK 465 LEU B -10 REMARK 465 GLY B -9 REMARK 465 THR B -8 REMARK 465 GLU B -7 REMARK 465 ASN B -6 REMARK 465 LEU B -5 REMARK 465 TYR B -4 REMARK 465 PHE B -3 REMARK 465 GLN B -2 REMARK 465 SER B -1 REMARK 465 MET B 0 REMARK 465 SER B 215 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 425 O HOH B 573 6554 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 65 111.32 78.91 REMARK 500 THR A 104 -65.29 -122.64 REMARK 500 ASN B 6 146.13 -172.27 REMARK 500 GLN B 65 108.92 77.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PX1 RELATED DB: PDB REMARK 900 THE STRUCTURE WITH BOUND MALONATE REMARK 900 RELATED ID: EFI-507068 RELATED DB: TARGETTRACK DBREF 4PXO A 2 215 UNP C5ATQ9 C5ATQ9_METEA 2 215 DBREF 4PXO B 2 215 UNP C5ATQ9 C5ATQ9_METEA 2 215 SEQADV 4PXO MET A -22 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO HIS A -21 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO HIS A -20 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO HIS A -19 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO HIS A -18 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO HIS A -17 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO HIS A -16 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO SER A -15 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO SER A -14 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO GLY A -13 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO VAL A -12 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO ASP A -11 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO LEU A -10 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO GLY A -9 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO THR A -8 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO GLU A -7 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO ASN A -6 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO LEU A -5 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO TYR A -4 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO PHE A -3 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO GLN A -2 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO SER A -1 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO MET A 0 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO VAL A 1 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO MET B -22 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO HIS B -21 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO HIS B -20 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO HIS B -19 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO HIS B -18 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO HIS B -17 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO HIS B -16 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO SER B -15 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO SER B -14 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO GLY B -13 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO VAL B -12 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO ASP B -11 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO LEU B -10 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO GLY B -9 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO THR B -8 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO GLU B -7 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO ASN B -6 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO LEU B -5 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO TYR B -4 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO PHE B -3 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO GLN B -2 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO SER B -1 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO MET B 0 UNP C5ATQ9 EXPRESSION TAG SEQADV 4PXO VAL B 1 UNP C5ATQ9 EXPRESSION TAG SEQRES 1 A 238 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 238 GLY THR GLU ASN LEU TYR PHE GLN SER MET VAL LYS MET SEQRES 3 A 238 TYR GLY ASN TRP ARG SER ALA ALA ALA PHE ARG VAL ARG SEQRES 4 A 238 ILE ALA LEU ASN LEU LYS GLY ILE ALA TYR GLU GLU VAL SEQRES 5 A 238 PHE LEU ASP LEU ASP ALA GLY ASP GLN HIS LYS PRO ASP SEQRES 6 A 238 PHE LEU ALA ILE ASN PRO GLN GLY ALA VAL PRO ALA LEU SEQRES 7 A 238 PHE ASP GLY ASP GLY PRO PRO LEU THR GLN SER LEU ALA SEQRES 8 A 238 ILE LEU ASP TYR LEU GLU GLU THR ARG THR GLY VAL PRO SEQRES 9 A 238 LEU LEU PRO GLU GLU PRO ARG ALA ARG ALA ARG ALA ARG SEQRES 10 A 238 SER LEU ALA GLN VAL VAL ALA CYS ASP THR HIS PRO LEU SEQRES 11 A 238 TYR VAL PRO ARG VAL ARG THR PHE LEU MET GLU ASN TYR SEQRES 12 A 238 GLY LEU PRO ARG GLU ARG MET LEU GLU PHE LEU ARG ASN SEQRES 13 A 238 ALA PHE ILE THR GLY LEU LYS THR LEU GLU THR ARG LEU SEQRES 14 A 238 SER ASN GLU ALA GLY THR GLY ARG PHE CYS GLN GLY ASP SEQRES 15 A 238 ALA VAL SER HIS ALA ASP LEU CYS LEU ILE SER LEU TRP SEQRES 16 A 238 VAL GLY THR GLY ILE PHE GLY ILE ASP THR ALA ALA TYR SEQRES 17 A 238 PRO THR VAL LYS ARG ILE SER GLU GLU VAL LEU ALA LEU SEQRES 18 A 238 ASP ALA VAL ALA ARG ALA HIS PRO LEU ARG GLN PRO GLY SEQRES 19 A 238 ALA PRO ALA SER SEQRES 1 B 238 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 238 GLY THR GLU ASN LEU TYR PHE GLN SER MET VAL LYS MET SEQRES 3 B 238 TYR GLY ASN TRP ARG SER ALA ALA ALA PHE ARG VAL ARG SEQRES 4 B 238 ILE ALA LEU ASN LEU LYS GLY ILE ALA TYR GLU GLU VAL SEQRES 5 B 238 PHE LEU ASP LEU ASP ALA GLY ASP GLN HIS LYS PRO ASP SEQRES 6 B 238 PHE LEU ALA ILE ASN PRO GLN GLY ALA VAL PRO ALA LEU SEQRES 7 B 238 PHE ASP GLY ASP GLY PRO PRO LEU THR GLN SER LEU ALA SEQRES 8 B 238 ILE LEU ASP TYR LEU GLU GLU THR ARG THR GLY VAL PRO SEQRES 9 B 238 LEU LEU PRO GLU GLU PRO ARG ALA ARG ALA ARG ALA ARG SEQRES 10 B 238 SER LEU ALA GLN VAL VAL ALA CYS ASP THR HIS PRO LEU SEQRES 11 B 238 TYR VAL PRO ARG VAL ARG THR PHE LEU MET GLU ASN TYR SEQRES 12 B 238 GLY LEU PRO ARG GLU ARG MET LEU GLU PHE LEU ARG ASN SEQRES 13 B 238 ALA PHE ILE THR GLY LEU LYS THR LEU GLU THR ARG LEU SEQRES 14 B 238 SER ASN GLU ALA GLY THR GLY ARG PHE CYS GLN GLY ASP SEQRES 15 B 238 ALA VAL SER HIS ALA ASP LEU CYS LEU ILE SER LEU TRP SEQRES 16 B 238 VAL GLY THR GLY ILE PHE GLY ILE ASP THR ALA ALA TYR SEQRES 17 B 238 PRO THR VAL LYS ARG ILE SER GLU GLU VAL LEU ALA LEU SEQRES 18 B 238 ASP ALA VAL ALA ARG ALA HIS PRO LEU ARG GLN PRO GLY SEQRES 19 B 238 ALA PRO ALA SER HET MLA A 301 7 HET GSH A 302 40 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET MLA B 301 7 HET GSH B 302 40 HET EDO B 303 4 HET EDO B 304 4 HET EDO B 305 4 HET EDO B 306 4 HET EDO B 307 4 HETNAM MLA MALONIC ACID HETNAM GSH GLUTATHIONE HETNAM EDO 1,2-ETHANEDIOL HETSYN MLA DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID; HETSYN 2 MLA METHANEDICARBOXYLIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 3 MLA 2(C3 H4 O4) FORMUL 4 GSH 2(C10 H17 N3 O6 S) FORMUL 5 EDO 8(C2 H6 O2) FORMUL 15 HOH *395(H2 O) HELIX 1 1 SER A 9 LYS A 22 1 14 HELIX 2 2 GLY A 36 HIS A 39 5 4 HELIX 3 3 LYS A 40 ASN A 47 1 8 HELIX 4 4 GLN A 65 ARG A 77 1 13 HELIX 5 5 GLU A 86 CYS A 102 1 17 HELIX 6 6 THR A 104 TYR A 108 5 5 HELIX 7 7 VAL A 109 GLY A 121 1 13 HELIX 8 8 PRO A 123 GLU A 149 1 27 HELIX 9 9 SER A 162 GLY A 179 1 18 HELIX 10 10 TYR A 185 ALA A 197 1 13 HELIX 11 11 LEU A 198 ALA A 204 1 7 HELIX 12 12 HIS A 205 GLN A 209 5 5 HELIX 13 13 SER B 9 GLY B 23 1 15 HELIX 14 14 GLY B 36 HIS B 39 5 4 HELIX 15 15 LYS B 40 ASN B 47 1 8 HELIX 16 16 GLN B 65 ARG B 77 1 13 HELIX 17 17 GLU B 86 CYS B 102 1 17 HELIX 18 18 THR B 104 TYR B 108 5 5 HELIX 19 19 VAL B 109 GLY B 121 1 13 HELIX 20 20 PRO B 123 GLU B 149 1 27 HELIX 21 21 SER B 162 GLY B 179 1 18 HELIX 22 22 TYR B 185 ALA B 197 1 13 HELIX 23 23 LEU B 198 HIS B 205 1 8 HELIX 24 24 PRO B 206 GLN B 209 5 4 SHEET 1 A 4 TYR A 26 PHE A 30 0 SHEET 2 A 4 VAL A 1 GLY A 5 1 N GLY A 5 O VAL A 29 SHEET 3 A 4 ALA A 54 PHE A 56 -1 O PHE A 56 N LYS A 2 SHEET 4 A 4 LEU A 63 THR A 64 -1 O LEU A 63 N LEU A 55 SHEET 1 B 4 GLU B 27 PHE B 30 0 SHEET 2 B 4 LYS B 2 GLY B 5 1 N GLY B 5 O VAL B 29 SHEET 3 B 4 ALA B 54 PHE B 56 -1 O ALA B 54 N TYR B 4 SHEET 4 B 4 LEU B 63 THR B 64 -1 O LEU B 63 N LEU B 55 CISPEP 1 VAL A 52 PRO A 53 0 2.36 CISPEP 2 VAL B 52 PRO B 53 0 3.72 SITE 1 AC1 8 ARG A 8 ALA A 10 HIS A 105 PRO A 110 SITE 2 AC1 8 ARG A 113 GSH A 302 EDO A 304 HOH A 459 SITE 1 AC2 22 SER A 9 ALA A 10 ALA A 11 ARG A 14 SITE 2 AC2 22 LEU A 33 GLN A 38 ALA A 51 VAL A 52 SITE 3 AC2 22 PRO A 53 GLN A 65 SER A 66 HIS A 105 SITE 4 AC2 22 PRO A 110 ARG A 111 MLA A 301 HOH A 415 SITE 5 AC2 22 HOH A 420 HOH A 435 HOH A 455 HOH A 594 SITE 6 AC2 22 CYS B 102 ASP B 103 SITE 1 AC3 4 ARG A 154 GLU A 194 ALA A 197 LEU A 198 SITE 1 AC4 8 ARG A 8 ALA A 10 SER A 170 VAL A 173 SITE 2 AC4 8 ILE A 177 PHE A 178 MLA A 301 HOH A 413 SITE 1 AC5 4 TRP A 7 TYR A 72 PRO A 213 GLU B 86 SITE 1 AC6 7 ARG B 8 ALA B 10 HIS B 105 ARG B 113 SITE 2 AC6 7 GSH B 302 EDO B 307 HOH B 472 SITE 1 AC7 26 CYS A 102 ASP A 103 HOH A 443 SER B 9 SITE 2 AC7 26 ALA B 10 ALA B 11 ARG B 14 LEU B 33 SITE 3 AC7 26 GLN B 38 GLY B 50 ALA B 51 VAL B 52 SITE 4 AC7 26 PRO B 53 GLN B 65 SER B 66 HIS B 105 SITE 5 AC7 26 VAL B 109 PRO B 110 ARG B 111 MLA B 301 SITE 6 AC7 26 EDO B 304 HOH B 406 HOH B 414 HOH B 426 SITE 7 AC7 26 HOH B 533 HOH B 535 SITE 1 AC8 7 LEU A 107 PHE A 130 ASN A 133 ALA A 134 SITE 2 AC8 7 ARG B 111 VAL B 112 PHE B 115 SITE 1 AC9 7 HOH A 539 GLN B 49 VAL B 109 ARG B 111 SITE 2 AC9 7 GSH B 302 HOH B 422 HOH B 534 SITE 1 BC1 6 PHE A 115 PHE B 130 ASN B 133 ALA B 134 SITE 2 BC1 6 HOH B 519 HOH B 556 SITE 1 BC2 5 ASN B 20 ALA B 200 HOH B 438 HOH B 489 SITE 2 BC2 5 HOH B 563 SITE 1 BC3 6 ARG B 8 ALA B 10 TYR B 108 ILE B 177 SITE 2 BC3 6 MLA B 301 HOH B 413 CRYST1 109.628 109.628 185.367 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009122 0.005266 0.000000 0.00000 SCALE2 0.000000 0.010533 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005395 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.122616 -0.679174 0.723662 31.25818 1 MTRIX2 2 -0.665672 -0.597103 -0.447604 58.77796 1 MTRIX3 2 0.736102 -0.426838 -0.525322 6.42490 1