HEADER HYDROLASE/DNA/RNA 26-MAR-14 4PY5 TITLE THERMOVIBRIO AMMONIFICANS RNASE H3 IN COMPLEX WITH 19-MER RNA/DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.1.26.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-R(*GP*AP*GP*UP*GP*CP*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*CP COMPND 9 *C)-3'; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*GP*GP*AP*AP*TP*CP*AP*GP*GP*TP*GP*TP*CP*GP*CP*AP*CP*TP COMPND 14 *C)-3'; COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOVIBRIO AMMONIFICANS; SOURCE 3 ORGANISM_TAXID: 648996; SOURCE 4 STRAIN: HB-1; SOURCE 5 GENE: THEAM_0945; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES KEYWDS RNASE H FOLD, RNA/DNA HYBRID, HYDROLASE-DNA-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.FIGIEL,M.NOWOTNY REVDAT 3 29-OCT-14 4PY5 1 TITLE REVDAT 2 27-AUG-14 4PY5 1 JRNL REVDAT 1 30-JUL-14 4PY5 0 JRNL AUTH M.FIGIEL,M.NOWOTNY JRNL TITL CRYSTAL STRUCTURE OF RNASE H3-SUBSTRATE COMPLEX REVEALS JRNL TITL 2 PARALLEL EVOLUTION OF RNA/DNA HYBRID RECOGNITION. JRNL REF NUCLEIC ACIDS RES. V. 42 9285 2014 JRNL REFN ISSN 0305-1048 JRNL PMID 25016521 JRNL DOI 10.1093/NAR/GKU615 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 25392 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1271 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.0982 - 4.3669 1.00 2859 151 0.1688 0.2122 REMARK 3 2 4.3669 - 3.4667 1.00 2730 144 0.1574 0.1951 REMARK 3 3 3.4667 - 3.0286 1.00 2713 142 0.1882 0.2386 REMARK 3 4 3.0286 - 2.7517 1.00 2684 142 0.2071 0.2600 REMARK 3 5 2.7517 - 2.5545 1.00 2666 140 0.2095 0.2971 REMARK 3 6 2.5545 - 2.4039 1.00 2669 140 0.1959 0.2642 REMARK 3 7 2.4039 - 2.2836 1.00 2672 141 0.1966 0.2309 REMARK 3 8 2.2836 - 2.1842 1.00 2610 137 0.2068 0.2595 REMARK 3 9 2.1842 - 2.1001 0.94 2518 134 0.2391 0.3135 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2978 REMARK 3 ANGLE : 1.074 4194 REMARK 3 CHIRALITY : 0.058 503 REMARK 3 PLANARITY : 0.004 392 REMARK 3 DIHEDRAL : 13.298 1197 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PY5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-14. REMARK 100 THE RCSB ID CODE IS RCSB085365. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25396 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.27 REMARK 200 R MERGE FOR SHELL (I) : 0.56400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.660 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMSO4, 0.1 M BISTRIS, 25% PEG REMARK 280 3350, 10 MM SPERMINE TETRAHYDROCHLORIDE, PH 5.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.22450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.75700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.83050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.75700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.22450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.83050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -125.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 267 REMARK 465 GLY A 268 REMARK 465 LYS A 269 REMARK 465 LYS A 270 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 9 CD OE1 OE2 REMARK 470 LYS A 13 CD CE NZ REMARK 470 LYS A 16 NZ REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 LYS A 24 CD CE NZ REMARK 470 ASN A 36 OD1 ND2 REMARK 470 LYS A 53 CD CE NZ REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 LYS A 102 NZ REMARK 470 GLU A 118 CG CD OE1 OE2 REMARK 470 LYS A 119 CD CE NZ REMARK 470 GLU A 122 CD OE1 OE2 REMARK 470 LYS A 134 CD CE NZ REMARK 470 LYS A 136 CE NZ REMARK 470 LYS A 142 CE NZ REMARK 470 LYS A 149 NZ REMARK 470 LYS A 151 CD CE NZ REMARK 470 LYS A 191 CD CE NZ REMARK 470 LYS A 204 CD CE NZ REMARK 470 LYS A 224 NZ REMARK 470 LYS A 227 CE NZ REMARK 470 LYS A 231 CE NZ REMARK 470 LYS A 234 CD CE NZ REMARK 470 LYS A 236 CD CE NZ REMARK 470 GLU A 246 CD OE1 OE2 REMARK 470 LYS A 253 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA C 4 C4' - C3' - C2' ANGL. DEV. = -4.3 DEGREES REMARK 500 DT C 5 C4' - C3' - C2' ANGL. DEV. = -4.2 DEGREES REMARK 500 DT C 5 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC C 6 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DA C 7 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT C 12 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 DC C 13 O4' - C4' - C3' ANGL. DEV. = -2.7 DEGREES REMARK 500 DC C 13 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG C 14 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC C 17 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT C 18 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 36 -111.92 58.97 REMARK 500 ASP A 97 -169.35 -102.13 REMARK 500 LYS A 151 27.23 49.48 REMARK 500 ASN A 152 122.33 -171.42 REMARK 500 LYS A 195 -125.84 49.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 78 OD1 REMARK 620 2 A B 8 OP2 172.7 REMARK 620 3 GLU A 79 O 84.1 103.3 REMARK 620 4 G B 7 OP1 89.3 89.3 102.4 REMARK 620 5 HOH A 425 O 98.7 74.0 176.2 75.0 REMARK 620 6 HOH A 406 O 96.3 83.6 90.0 166.9 92.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 101 DBREF 4PY5 A 1 270 UNP E8T217 E8T217_THEA1 1 270 DBREF 4PY5 B 1 19 PDB 4PY5 4PY5 1 19 DBREF 4PY5 C 1 19 PDB 4PY5 4PY5 1 19 SEQADV 4PY5 SER A 0 UNP E8T217 EXPRESSION TAG SEQADV 4PY5 ASN A 78 UNP E8T217 ASP 78 ENGINEERED MUTATION SEQRES 1 A 271 SER MET LYS LEU SER SER SER GLU LYS GLU LYS LEU LEU SEQRES 2 A 271 LYS LYS LEU LYS ALA LEU GLY ALA LYS GLU GLU LYS PRO SEQRES 3 A 271 PRO GLU HIS ALA GLN TYR ARG LEU ARG LEU ASN ASP ALA SEQRES 4 A 271 ILE LEU THR VAL TYR LYS SER GLY SER VAL VAL TYR GLY SEQRES 5 A 271 GLY LYS GLY ARG GLU LYS LEU LYS GLU LEU VAL ALA GLU SEQRES 6 A 271 THR VAL LEU SER ASP THR GLU LEU PRO ARG ILE GLY CYS SEQRES 7 A 271 ASN GLU ALA GLY LYS GLY GLU PHE VAL GLY PRO LEU VAL SEQRES 8 A 271 VAL ALA CYS ILE VAL ALA ASP GLU LYS CYS LEU LYS ARG SEQRES 9 A 271 LEU ILE GLU LEU GLY VAL LYS ASP SER LYS LYS LEU SER SEQRES 10 A 271 ASN GLU LYS VAL GLU GLU LEU ALA SER GLU ILE THR GLU SEQRES 11 A 271 THR CYS HIS GLY LYS VAL LYS LEU LEU ILE PRO GLU LYS SEQRES 12 A 271 TYR ASN ARG ALA TYR SER LYS PHE LYS ASN ILE ASN ARG SEQRES 13 A 271 LEU LEU GLU ALA VAL TYR ARG GLU ILE VAL SER ASP LEU SEQRES 14 A 271 CYS GLU LYS PHE SER PRO LYS VAL VAL VAL VAL ASP LYS SEQRES 15 A 271 PHE SER ASN ARG ALA GLU GLU VAL LEU LYS ASP VAL VAL SEQRES 16 A 271 LYS GLY ALA ARG LEU GLU VAL ARG PRO LYS ALA GLU ASP SEQRES 17 A 271 ASP LEU ALA VAL ALA ALA ALA SER ILE VAL ALA LYS ALA SEQRES 18 A 271 VAL ARG LEU LYS THR MET LYS GLU LEU GLU LYS ARG PHE SEQRES 19 A 271 LYS VAL LYS LEU PRO GLU GLY ASN THR GLY LEU ALA GLU SEQRES 20 A 271 LEU LEU LYS LYS THR PRO LYS GLU LEU HIS GLU LYS LEU SEQRES 21 A 271 PHE LYS LEU HIS PHE SER VAL GLY GLY LYS LYS SEQRES 1 B 19 G A G U G C G A C A C C U SEQRES 2 B 19 G A U U C C SEQRES 1 C 19 DG DG DA DA DT DC DA DG DG DT DG DT DC SEQRES 2 C 19 DG DC DA DC DT DC HET MG A 301 1 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 A 306 5 HET SO4 A 307 5 HET GOL A 308 6 HET SO4 C 101 5 HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 MG MG 2+ FORMUL 5 SO4 7(O4 S 2-) FORMUL 11 GOL C3 H8 O3 FORMUL 13 HOH *187(H2 O) HELIX 1 1 SER A 4 LEU A 18 1 15 HELIX 2 2 ARG A 55 ASP A 69 1 15 HELIX 3 3 ASP A 97 GLY A 108 1 12 HELIX 4 4 ASP A 111 LEU A 115 5 5 HELIX 5 5 SER A 116 CYS A 131 1 16 HELIX 6 6 ILE A 139 LYS A 151 1 13 HELIX 7 7 ASN A 152 SER A 173 1 22 HELIX 8 8 ARG A 185 LYS A 191 1 7 HELIX 9 9 LYS A 204 ASP A 207 5 4 HELIX 10 10 ASP A 208 PHE A 233 1 26 HELIX 11 11 GLY A 243 THR A 251 1 9 HELIX 12 12 PRO A 252 GLU A 254 5 3 HELIX 13 13 LEU A 255 PHE A 260 1 6 SHEET 1 A 4 LYS A 21 GLU A 23 0 SHEET 2 A 4 ALA A 29 LEU A 35 -1 O ARG A 32 N GLU A 23 SHEET 3 A 4 ALA A 38 TYR A 43 -1 O VAL A 42 N GLN A 30 SHEET 4 A 4 VAL A 48 GLY A 52 -1 O VAL A 49 N THR A 41 SHEET 1 B 5 HIS A 132 LEU A 138 0 SHEET 2 B 5 LEU A 89 ALA A 96 -1 N VAL A 91 O LYS A 136 SHEET 3 B 5 ARG A 74 ALA A 80 -1 N ARG A 74 O ALA A 96 SHEET 4 B 5 VAL A 176 ASP A 180 1 O VAL A 178 N ILE A 75 SHEET 5 B 5 ARG A 198 ARG A 202 1 O GLU A 200 N VAL A 177 SSBOND 1 CYS A 100 CYS A 131 1555 1555 2.03 LINK OD1 ASN A 78 MG MG A 301 1555 1555 2.08 LINK OP2 A B 8 MG MG A 301 1555 1555 2.36 LINK O GLU A 79 MG MG A 301 1555 1555 2.49 LINK OP1 G B 7 MG MG A 301 1555 1555 2.94 LINK MG MG A 301 O HOH A 425 1555 1555 2.34 LINK MG MG A 301 O HOH A 406 1555 1555 2.56 CISPEP 1 LEU A 72 PRO A 73 0 -3.41 SITE 1 AC1 6 ASN A 78 GLU A 79 HOH A 406 HOH A 425 SITE 2 AC1 6 G B 7 A B 8 SITE 1 AC2 6 ARG A 74 ARG A 198 ARG A 202 HOH A 429 SITE 2 AC2 6 HOH A 500 HOH A 501 SITE 1 AC3 5 HIS A 132 GLY A 133 LYS A 250 HOH A 421 SITE 2 AC3 5 HOH A 460 SITE 1 AC4 4 SER A 5 LYS A 8 GLY A 196 HOH A 508 SITE 1 AC5 3 LYS A 53 GLY A 54 ARG A 55 SITE 1 AC6 6 ASN A 154 ARG A 155 ASN A 184 ARG A 185 SITE 2 AC6 6 DC C 17 HOH C 218 SITE 1 AC7 2 PRO A 252 LYS A 253 SITE 1 AC8 3 HIS A 28 LYS A 44 LEU A 199 SITE 1 AC9 6 DC C 15 DA C 16 HOH C 211 HOH C 216 SITE 2 AC9 6 HOH C 217 HOH C 221 CRYST1 58.449 67.661 107.514 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017109 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014780 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009301 0.00000