HEADER PROTEIN BINDING 26-MAR-14 4PY6 TITLE CRYSTAL STRUCTURE OF BROMODOMAIN OF PFA0510W FROM PLASMODIUM TITLE 2 FALCIPARUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN PROTEIN, PUTATIVE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 1172-1315; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM 3D7; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 GENE: PFA0510W, PFA_0510W, PFUGPA_00085; SOURCE 5 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15-MHL KEYWDS STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 2 BROMODOMAIN, MALARIA, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.FONSECA,C.TALLANT,A.HUTCHINSON,P.SAVITSKY,T.KROJER, AUTHOR 2 P.FILIPPAKOPOULOS,P.LOPPNAU,P.E.BRENNAN,F.VON DELFT,A.DONG, AUTHOR 3 G.A.JOSLING,M.F.DUFFY,C.H.ARROWSMITH,C.BOUNTRA,R.HUI,S.KNAPP, AUTHOR 4 A.K.WERNIMONT,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 28-FEB-24 4PY6 1 REMARK SEQADV REVDAT 2 07-MAY-14 4PY6 1 AUTHOR REVDAT 1 30-APR-14 4PY6 0 JRNL AUTH M.FONSECA,C.TALLANT,A.HUTCHINSON,P.SAVITSKY,T.KROJER, JRNL AUTH 2 P.FILIPPAKOPOULOS,P.LOPPNAU,P.E.BRENNAN,F.VON DELFT,A.DONG, JRNL AUTH 3 G.A.JOSLING,M.F.DUFFY,C.H.ARROWSMITH,C.BOUNTRA,R.HUI, JRNL AUTH 4 S.KNAPP,A.K.WERNIMONT,STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYSTAL STRUCTURE OF BROMODOMAIN OF PFA0510W FROM PLASMODIUM JRNL TITL 2 FALCIPARUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 24293 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 1254 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 12 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.61 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.77 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2932 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2840 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2782 REMARK 3 BIN R VALUE (WORKING SET) : 0.2831 REMARK 3 BIN FREE R VALUE : 0.3013 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.12 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 150 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4424 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 128 REMARK 3 SOLVENT ATOMS : 134 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.21500 REMARK 3 B22 (A**2) : 12.71260 REMARK 3 B33 (A**2) : -5.49760 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.444 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.556 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.880 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.858 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4708 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6344 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1716 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 160 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 631 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4708 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 592 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5336 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.97 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 1.60 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.95 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|1186 - A|1317 } REMARK 3 ORIGIN FOR THE GROUP (A): -24.611 -33.005 -42.367 REMARK 3 T TENSOR REMARK 3 T11: -0.1734 T22: 0.1265 REMARK 3 T33: -0.1393 T12: -0.0250 REMARK 3 T13: 0.0175 T23: 0.0368 REMARK 3 L TENSOR REMARK 3 L11: 3.0514 L22: 1.5902 REMARK 3 L33: 1.7495 L12: -0.6182 REMARK 3 L13: -0.2535 L23: -0.0212 REMARK 3 S TENSOR REMARK 3 S11: 0.0327 S12: -0.1554 S13: 0.0950 REMARK 3 S21: 0.0146 S22: -0.0690 S23: -0.0639 REMARK 3 S31: -0.0539 S32: 0.2549 S33: 0.0363 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|1188 - B|1318 } REMARK 3 ORIGIN FOR THE GROUP (A): -18.612 -28.669 -68.071 REMARK 3 T TENSOR REMARK 3 T11: -0.1975 T22: 0.1738 REMARK 3 T33: -0.1636 T12: -0.0889 REMARK 3 T13: 0.0261 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 1.4343 L22: 2.6991 REMARK 3 L33: 2.1912 L12: -0.8738 REMARK 3 L13: -0.3173 L23: 0.1721 REMARK 3 S TENSOR REMARK 3 S11: -0.0017 S12: 0.0102 S13: -0.1065 REMARK 3 S21: 0.0432 S22: -0.0913 S23: 0.2979 REMARK 3 S31: 0.2905 S32: -0.0167 S33: 0.0930 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|1190 - C|1316 } REMARK 3 ORIGIN FOR THE GROUP (A): -23.935 -33.878 -14.584 REMARK 3 T TENSOR REMARK 3 T11: -0.3036 T22: 0.3040 REMARK 3 T33: -0.2788 T12: -0.0191 REMARK 3 T13: -0.0370 T23: 0.0671 REMARK 3 L TENSOR REMARK 3 L11: 1.3823 L22: 3.0168 REMARK 3 L33: 2.4232 L12: 0.0512 REMARK 3 L13: 0.2786 L23: 0.3017 REMARK 3 S TENSOR REMARK 3 S11: 0.0103 S12: -0.0403 S13: 0.0089 REMARK 3 S21: 0.0392 S22: -0.0892 S23: -0.2379 REMARK 3 S31: -0.0287 S32: 0.1596 S33: 0.0790 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|1191 - D|1318 } REMARK 3 ORIGIN FOR THE GROUP (A): -18.679 -28.482 -95.703 REMARK 3 T TENSOR REMARK 3 T11: -0.2083 T22: 0.3040 REMARK 3 T33: -0.3040 T12: -0.0934 REMARK 3 T13: -0.0063 T23: -0.0514 REMARK 3 L TENSOR REMARK 3 L11: 2.7824 L22: 1.1925 REMARK 3 L33: 2.9288 L12: 0.8361 REMARK 3 L13: -0.6889 L23: -0.3668 REMARK 3 S TENSOR REMARK 3 S11: -0.0997 S12: 0.3825 S13: 0.0251 REMARK 3 S21: -0.1371 S22: 0.0983 S23: 0.1064 REMARK 3 S31: 0.3281 S32: -0.5442 S33: 0.0014 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|1401 - A|1401 C|1401 - C|1401 B|1401 - B|1401 REMARK 3 D|1401 - D|1401 } REMARK 3 ORIGIN FOR THE GROUP (A): -17.251 -33.009 -52.394 REMARK 3 T TENSOR REMARK 3 T11: -0.0719 T22: 0.1237 REMARK 3 T33: -0.2834 T12: 0.0158 REMARK 3 T13: -0.0314 T23: 0.0669 REMARK 3 L TENSOR REMARK 3 L11: 1.2277 L22: 0.0000 REMARK 3 L33: 1.4275 L12: -0.9919 REMARK 3 L13: -2.8831 L23: -1.8491 REMARK 3 S TENSOR REMARK 3 S11: -0.0083 S12: -0.1224 S13: -0.0205 REMARK 3 S21: 0.0059 S22: -0.0374 S23: 0.0314 REMARK 3 S31: 0.0338 S32: 0.0753 S33: 0.0458 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PY6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000085366. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.17, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29757 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330 REMARK 200 RESOLUTION RANGE LOW (A) : 29.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.16400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.56100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, 0.1 M CACL2, 20% PEG6K, REMARK 280 15% ETHYLENE GLYCOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K, PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.16200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.13450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 109.86200 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.16200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.13450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 109.86200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.16200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.13450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 109.86200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.16200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.13450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 109.86200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS HAVE INDICATED THAT THE BIOLOGICAL UNIT IS UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1174 REMARK 465 TYR A 1175 REMARK 465 ASN A 1176 REMARK 465 GLY A 1177 REMARK 465 ASP A 1178 REMARK 465 GLU A 1179 REMARK 465 LYS A 1180 REMARK 465 SER A 1181 REMARK 465 VAL A 1182 REMARK 465 SER A 1183 REMARK 465 LYS A 1184 REMARK 465 ALA A 1185 REMARK 465 ASN A 1318 REMARK 465 GLY B 1174 REMARK 465 TYR B 1175 REMARK 465 ASN B 1176 REMARK 465 GLY B 1177 REMARK 465 ASP B 1178 REMARK 465 GLU B 1179 REMARK 465 LYS B 1180 REMARK 465 SER B 1181 REMARK 465 VAL B 1182 REMARK 465 SER B 1183 REMARK 465 LYS B 1184 REMARK 465 ALA B 1185 REMARK 465 GLU B 1186 REMARK 465 ASN B 1187 REMARK 465 GLY C 1174 REMARK 465 TYR C 1175 REMARK 465 ASN C 1176 REMARK 465 GLY C 1177 REMARK 465 ASP C 1178 REMARK 465 GLU C 1179 REMARK 465 LYS C 1180 REMARK 465 SER C 1181 REMARK 465 VAL C 1182 REMARK 465 SER C 1183 REMARK 465 LYS C 1184 REMARK 465 ALA C 1185 REMARK 465 GLU C 1186 REMARK 465 ASN C 1187 REMARK 465 SER C 1188 REMARK 465 ASN C 1189 REMARK 465 ASN C 1317 REMARK 465 ASN C 1318 REMARK 465 GLY D 1174 REMARK 465 TYR D 1175 REMARK 465 ASN D 1176 REMARK 465 GLY D 1177 REMARK 465 ASP D 1178 REMARK 465 GLU D 1179 REMARK 465 LYS D 1180 REMARK 465 SER D 1181 REMARK 465 VAL D 1182 REMARK 465 SER D 1183 REMARK 465 LYS D 1184 REMARK 465 ALA D 1185 REMARK 465 GLU D 1186 REMARK 465 ASN D 1187 REMARK 465 SER D 1188 REMARK 465 ASN D 1189 REMARK 465 LYS D 1190 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A1317 CG OD1 ND2 REMARK 470 SER B1188 OG REMARK 470 LYS B1190 CG CD CE NZ REMARK 470 LYS C1190 CG CD CE NZ REMARK 470 GLU C1283 CG CD OE1 OE2 REMARK 470 LEU C1316 CG CD1 CD2 REMARK 470 ARG D1191 CG CD NE CZ NH1 NH2 REMARK 470 ILE D1256 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A1215 -54.32 -28.64 REMARK 500 LYS B1190 74.24 -119.94 REMARK 500 PHE B1215 -57.15 -28.17 REMARK 500 PHE C1215 -59.66 -26.71 REMARK 500 LYS D1218 -73.83 -68.64 REMARK 500 ASP D1280 82.85 -68.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 R78 A 1401 REMARK 610 R78 B 1401 REMARK 610 R78 C 1401 REMARK 610 R78 D 1401 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R78 A 1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R78 B 1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R78 C 1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R78 D 1401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PFA0510W RELATED DB: TARGETTRACK DBREF 4PY6 A 1175 1318 UNP Q8I240 Q8I240_PLAF7 1172 1315 DBREF 4PY6 B 1175 1318 UNP Q8I240 Q8I240_PLAF7 1172 1315 DBREF 4PY6 C 1175 1318 UNP Q8I240 Q8I240_PLAF7 1172 1315 DBREF 4PY6 D 1175 1318 UNP Q8I240 Q8I240_PLAF7 1172 1315 SEQADV 4PY6 GLY A 1174 UNP Q8I240 EXPRESSION TAG SEQADV 4PY6 GLY B 1174 UNP Q8I240 EXPRESSION TAG SEQADV 4PY6 GLY C 1174 UNP Q8I240 EXPRESSION TAG SEQADV 4PY6 GLY D 1174 UNP Q8I240 EXPRESSION TAG SEQRES 1 A 145 GLY TYR ASN GLY ASP GLU LYS SER VAL SER LYS ALA GLU SEQRES 2 A 145 ASN SER ASN LYS ARG LEU LEU LYS GLN TRP GLU LYS ILE SEQRES 3 A 145 LEU ARG ASP ASN VAL LEU LYS LEU LEU LYS ASN ASP ASN SEQRES 4 A 145 ASN ALA PHE TYR PHE LYS THR PRO VAL LEU GLU ASP ILE SEQRES 5 A 145 ASN ILE ASN ASP ASN ILE LYS GLU GLU TYR ARG ILE LYS SEQRES 6 A 145 ILE LYS LYS PRO MET ASP TYR ILE THR ILE SER ARG ASN SEQRES 7 A 145 LEU SER ASP GLY ILE TYR LYS GLU PRO ILE ASP PHE TYR SEQRES 8 A 145 HIS ASP MET LYS LEU ILE TYR LYS ASN CYS ILE ASP PHE SEQRES 9 A 145 ASN PRO ASP ILE GLU GLU ASN LYS TYR ILE ILE GLU ALA SEQRES 10 A 145 ALA LYS SER SER ASP MET LYS PHE GLU PHE LEU TRP ASN SEQRES 11 A 145 LYS TRP LYS GLU LYS ILE ASN ASN ASN PHE CYS ASP LEU SEQRES 12 A 145 ASN ASN SEQRES 1 B 145 GLY TYR ASN GLY ASP GLU LYS SER VAL SER LYS ALA GLU SEQRES 2 B 145 ASN SER ASN LYS ARG LEU LEU LYS GLN TRP GLU LYS ILE SEQRES 3 B 145 LEU ARG ASP ASN VAL LEU LYS LEU LEU LYS ASN ASP ASN SEQRES 4 B 145 ASN ALA PHE TYR PHE LYS THR PRO VAL LEU GLU ASP ILE SEQRES 5 B 145 ASN ILE ASN ASP ASN ILE LYS GLU GLU TYR ARG ILE LYS SEQRES 6 B 145 ILE LYS LYS PRO MET ASP TYR ILE THR ILE SER ARG ASN SEQRES 7 B 145 LEU SER ASP GLY ILE TYR LYS GLU PRO ILE ASP PHE TYR SEQRES 8 B 145 HIS ASP MET LYS LEU ILE TYR LYS ASN CYS ILE ASP PHE SEQRES 9 B 145 ASN PRO ASP ILE GLU GLU ASN LYS TYR ILE ILE GLU ALA SEQRES 10 B 145 ALA LYS SER SER ASP MET LYS PHE GLU PHE LEU TRP ASN SEQRES 11 B 145 LYS TRP LYS GLU LYS ILE ASN ASN ASN PHE CYS ASP LEU SEQRES 12 B 145 ASN ASN SEQRES 1 C 145 GLY TYR ASN GLY ASP GLU LYS SER VAL SER LYS ALA GLU SEQRES 2 C 145 ASN SER ASN LYS ARG LEU LEU LYS GLN TRP GLU LYS ILE SEQRES 3 C 145 LEU ARG ASP ASN VAL LEU LYS LEU LEU LYS ASN ASP ASN SEQRES 4 C 145 ASN ALA PHE TYR PHE LYS THR PRO VAL LEU GLU ASP ILE SEQRES 5 C 145 ASN ILE ASN ASP ASN ILE LYS GLU GLU TYR ARG ILE LYS SEQRES 6 C 145 ILE LYS LYS PRO MET ASP TYR ILE THR ILE SER ARG ASN SEQRES 7 C 145 LEU SER ASP GLY ILE TYR LYS GLU PRO ILE ASP PHE TYR SEQRES 8 C 145 HIS ASP MET LYS LEU ILE TYR LYS ASN CYS ILE ASP PHE SEQRES 9 C 145 ASN PRO ASP ILE GLU GLU ASN LYS TYR ILE ILE GLU ALA SEQRES 10 C 145 ALA LYS SER SER ASP MET LYS PHE GLU PHE LEU TRP ASN SEQRES 11 C 145 LYS TRP LYS GLU LYS ILE ASN ASN ASN PHE CYS ASP LEU SEQRES 12 C 145 ASN ASN SEQRES 1 D 145 GLY TYR ASN GLY ASP GLU LYS SER VAL SER LYS ALA GLU SEQRES 2 D 145 ASN SER ASN LYS ARG LEU LEU LYS GLN TRP GLU LYS ILE SEQRES 3 D 145 LEU ARG ASP ASN VAL LEU LYS LEU LEU LYS ASN ASP ASN SEQRES 4 D 145 ASN ALA PHE TYR PHE LYS THR PRO VAL LEU GLU ASP ILE SEQRES 5 D 145 ASN ILE ASN ASP ASN ILE LYS GLU GLU TYR ARG ILE LYS SEQRES 6 D 145 ILE LYS LYS PRO MET ASP TYR ILE THR ILE SER ARG ASN SEQRES 7 D 145 LEU SER ASP GLY ILE TYR LYS GLU PRO ILE ASP PHE TYR SEQRES 8 D 145 HIS ASP MET LYS LEU ILE TYR LYS ASN CYS ILE ASP PHE SEQRES 9 D 145 ASN PRO ASP ILE GLU GLU ASN LYS TYR ILE ILE GLU ALA SEQRES 10 D 145 ALA LYS SER SER ASP MET LYS PHE GLU PHE LEU TRP ASN SEQRES 11 D 145 LYS TRP LYS GLU LYS ILE ASN ASN ASN PHE CYS ASP LEU SEQRES 12 D 145 ASN ASN HET R78 A1401 58 HET EDO A1402 4 HET R78 B1401 29 HET EDO B1402 4 HET EDO B1403 4 HET R78 C1401 29 HET R78 D1401 29 HETNAM R78 4-{[(7R)-8-CYCLOPENTYL-7-ETHYL-5-METHYL-6-OXO-5,6,7,8- HETNAM 2 R78 TETRAHYDROPTERIDIN-2-YL]AMINO}-3-METHOXY-N-(1- HETNAM 3 R78 METHYLPIPERIDIN-4-YL)BENZAMIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 R78 4(C28 H39 N7 O3) FORMUL 6 EDO 3(C2 H6 O2) FORMUL 12 HOH *134(H2 O) HELIX 1 1 LYS A 1194 VAL A 1204 1 11 HELIX 2 2 ALA A 1214 LYS A 1218 5 5 HELIX 3 3 ASN A 1228 ILE A 1239 1 12 HELIX 4 4 ASP A 1244 GLY A 1255 1 12 HELIX 5 5 GLU A 1259 ASN A 1278 1 20 HELIX 6 6 ILE A 1281 GLU A 1283 5 3 HELIX 7 7 ASN A 1284 ASN A 1312 1 29 HELIX 8 8 LYS B 1194 VAL B 1204 1 11 HELIX 9 9 VAL B 1204 LYS B 1209 1 6 HELIX 10 10 ALA B 1214 LYS B 1218 5 5 HELIX 11 11 ASN B 1228 ILE B 1239 1 12 HELIX 12 12 ASP B 1244 GLY B 1255 1 12 HELIX 13 13 GLU B 1259 ASN B 1278 1 20 HELIX 14 14 ASN B 1284 LEU B 1316 1 33 HELIX 15 15 LYS C 1194 VAL C 1204 1 11 HELIX 16 16 VAL C 1204 ASN C 1210 1 7 HELIX 17 17 ALA C 1214 LYS C 1218 5 5 HELIX 18 18 ASN C 1228 ILE C 1239 1 12 HELIX 19 19 ASP C 1244 GLY C 1255 1 12 HELIX 20 20 GLU C 1259 ASN C 1278 1 20 HELIX 21 21 ASN C 1284 ASN C 1312 1 29 HELIX 22 22 LYS D 1194 ASN D 1203 1 10 HELIX 23 23 VAL D 1204 LYS D 1209 1 6 HELIX 24 24 ASN D 1228 ILE D 1239 1 12 HELIX 25 25 ASP D 1244 ASP D 1254 1 11 HELIX 26 26 GLU D 1259 ASN D 1278 1 20 HELIX 27 27 ILE D 1281 GLU D 1283 5 3 HELIX 28 28 ASN D 1284 LEU D 1316 1 33 SHEET 1 A 2 SER A1188 ASN A1189 0 SHEET 2 A 2 ARG B1191 LEU B1192 -1 O LEU B1192 N SER A1188 SITE 1 AC1 9 PHE A1215 TYR A1216 ASP A1224 ASN A1226 SITE 2 AC1 9 ILE A1227 PHE A1277 ASN A1278 ILE A1287 SITE 3 AC1 9 HOH A1501 SITE 1 AC2 3 LYS A1194 TRP A1196 CYS A1314 SITE 1 AC3 8 PHE B1215 TYR B1216 ASN B1226 ILE B1227 SITE 2 AC3 8 PHE B1277 ASN B1278 ASN B1284 ILE B1287 SITE 1 AC4 3 ARG A1236 LYS B1240 PRO B1242 SITE 1 AC5 4 LYS B1241 MET B1243 ASN B1251 ASP B1266 SITE 1 AC6 7 PHE C1215 TYR C1216 ASN C1226 ILE C1227 SITE 2 AC6 7 ASN C1278 ASN C1284 ILE C1287 SITE 1 AC7 10 PHE D1215 TYR D1216 ASP D1224 ASN D1226 SITE 2 AC7 10 ILE D1227 PHE D1277 ASN D1278 ASN D1284 SITE 3 AC7 10 ILE D1287 HOH D1514 CRYST1 74.324 84.269 219.724 90.00 90.00 90.00 I 2 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013455 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011867 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004551 0.00000