HEADER UNKNOWN FUNCTION 26-MAR-14 4PY9 TITLE CRYSTAL STRUCTURE OF AN EXOPOLYPHOSPHATASE-RELATED PROTEIN FROM TITLE 2 BACTEROIDES FRAGILIS. NORTHEAST STRUCTURAL GENOMICS TARGET BFR192 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE EXOPOLYPHOSPHATASE-RELATED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES FRAGILIS; SOURCE 3 ORGANISM_TAXID: 817; SOURCE 4 GENE: BF3900; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET 21 KEYWDS STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, NESG, EXOPOLYPHOSPHATASE-RELATED KEYWDS 3 PROTEIN, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR J.SEETHARAMAN,M.ABASHIDZE,H.WANG,H.JANJUA,E.L.FOOTE,R.XIAO,R.NAIR, AUTHOR 2 J.K.EVERETT,T.B.ACTON,B.ROST,G.T.MONTELIONE,L.TONG,J.F.HUNT, AUTHOR 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 1 25-JUN-14 4PY9 0 SPRSDE 25-JUN-14 4PY9 3DMA JRNL AUTH J.SEETHARAMAN,M.ABASHIDZE,H.WANG,H.JANJUA,E.L.FOOTE,R.XIAO, JRNL AUTH 2 R.NAIR,J.K.EVERETT,T.B.ACTON,B.ROST,G.T.MONTELIONE,L.TONG, JRNL AUTH 3 J.F.HUNT,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) JRNL TITL CRYSTAL STRUCTURE OF AN EXOPOLYPHOSPHATASE-RELATED PROTEIN JRNL TITL 2 FROM BACTEROIDES FRAGILIS. NORTHEAST STRUCTURAL GENOMICS JRNL TITL 3 TARGET BFR192 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 3 NUMBER OF REFLECTIONS : 20515 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.300 REMARK 3 FREE R VALUE TEST SET COUNT : 2105 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1304 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 133 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2725 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 109 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.65000 REMARK 3 B22 (A**2) : 1.65000 REMARK 3 B33 (A**2) : -5.34000 REMARK 3 B12 (A**2) : 1.65000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.312 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.236 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.157 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.366 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2799 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2633 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3771 ; 1.218 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6081 ; 0.688 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 338 ; 5.135 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;34.757 ;24.154 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 471 ;13.118 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;16.985 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 407 ; 0.053 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3107 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 639 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4PY9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-14. REMARK 100 THE RCSB ID CODE IS RCSB085369. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40928 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.500 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : 0.05600 REMARK 200 FOR THE DATA SET : 17.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.40 REMARK 200 R MERGE FOR SHELL (I) : 0.43200 REMARK 200 R SYM FOR SHELL (I) : 0.28000 REMARK 200 FOR SHELL : 17.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 320 MM KACETATE, 100 MM NAACETATE, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.78933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.89467 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.89467 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 71.78933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -123.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 71.78933 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 LYS A 283 REMARK 465 LYS A 284 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -164.48 -121.35 REMARK 500 TYR A 81 52.52 -140.59 REMARK 500 ASP A 107 87.10 24.14 REMARK 500 GLU A 108 -22.31 92.76 REMARK 500 TYR A 128 63.84 71.60 REMARK 500 ASP A 131 55.56 -112.58 REMARK 500 ASN A 213 41.09 -109.90 REMARK 500 ASN A 307 46.74 27.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 408 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 138 OG REMARK 620 2 HIS A 126 O 109.8 REMARK 620 3 ASP A 124 OD2 154.3 92.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 406 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 33 OD2 REMARK 620 2 ASP A 177 OD1 101.8 REMARK 620 3 THR A 176 OG1 136.5 117.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 408 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NESG-BFR192 RELATED DB: TARGETTRACK DBREF 4PY9 A 1 343 UNP Q64PD9 Q64PD9_BACFR 1 343 SEQRES 1 A 343 MSE LEU THR LYS VAL ILE ALA GLN ALA HIS ILE ASP HIS SEQRES 2 A 343 PHE THR LYS TRP PHE GLU ARG ALA ASP LYS ILE VAL ILE SEQRES 3 A 343 VAL SER HIS VAL SER PRO ASP GLY ASP ALA ILE GLY SER SEQRES 4 A 343 SER LEU GLY LEU TYR HIS PHE LEU ASP SER GLN ASP LYS SEQRES 5 A 343 ILE VAL ASN VAL ILE VAL PRO ASN ALA PHE PRO ASP PHE SEQRES 6 A 343 LEU LYS TRP MSE PRO GLY SER LYS ASP ILE LEU LEU TYR SEQRES 7 A 343 ASP ARG TYR GLN GLU PHE ALA ASP LYS LEU ILE MSE GLU SEQRES 8 A 343 ALA ASP VAL ILE CYS CYS LEU ASP PHE ASN ALA LEU LYS SEQRES 9 A 343 ARG ILE ASP GLU MSE SER ASP ILE VAL ALA ALA SER PRO SEQRES 10 A 343 GLY ARG LYS ILE MSE ILE ASP HIS HIS LEU TYR PRO GLU SEQRES 11 A 343 ASP PHE CYS ARG ILE THR ILE SER HIS PRO GLU ILE SER SEQRES 12 A 343 SER THR SER GLU LEU VAL PHE ARG LEU ILE CYS ARG MSE SEQRES 13 A 343 GLY TYR PHE SER ASP ILE SER LYS GLU GLY ALA GLU CYS SEQRES 14 A 343 ILE TYR THR GLY MSE MSE THR ASP THR GLY GLY PHE THR SEQRES 15 A 343 TYR ASN SER ASN ASN ARG GLU ILE TYR PHE ILE ILE SER SEQRES 16 A 343 GLU LEU LEU SER LYS GLY ILE ASP LYS ASP ASP ILE TYR SEQRES 17 A 343 ARG LYS VAL TYR ASN THR TYR SER GLU SER ARG LEU ARG SEQRES 18 A 343 LEU MSE GLY TYR VAL LEU SER ASN MSE LYS VAL TYR LYS SEQRES 19 A 343 ASP TYR ASN SER ALA LEU ILE SER LEU THR LYS GLU GLU SEQRES 20 A 343 GLN GLY LYS PHE ASP TYR ILE LYS GLY ASP SER GLU GLY SEQRES 21 A 343 PHE VAL ASN ILE PRO LEU SER ILE LYS ASN VAL CYS PHE SEQRES 22 A 343 SER CYS PHE LEU ARG GLU ASP THR GLU LYS LYS MSE ILE SEQRES 23 A 343 LYS ILE SER LEU ARG SER VAL GLY LYS PHE PRO CYS ASN SEQRES 24 A 343 ARG LEU ALA ALA GLU PHE PHE ASN GLY GLY GLY HIS LEU SEQRES 25 A 343 ASN ALA SER GLY GLY GLU PHE TYR GLY THR MSE GLU GLU SEQRES 26 A 343 ALA VAL LYS VAL PHE GLU GLN ALA LEU GLU LYS TYR LYS SEQRES 27 A 343 PRO LEU LEU LYS GLU MODRES 4PY9 MSE A 69 MET SELENOMETHIONINE MODRES 4PY9 MSE A 90 MET SELENOMETHIONINE MODRES 4PY9 MSE A 109 MET SELENOMETHIONINE MODRES 4PY9 MSE A 122 MET SELENOMETHIONINE MODRES 4PY9 MSE A 156 MET SELENOMETHIONINE MODRES 4PY9 MSE A 174 MET SELENOMETHIONINE MODRES 4PY9 MSE A 175 MET SELENOMETHIONINE MODRES 4PY9 MSE A 223 MET SELENOMETHIONINE MODRES 4PY9 MSE A 230 MET SELENOMETHIONINE MODRES 4PY9 MSE A 285 MET SELENOMETHIONINE MODRES 4PY9 MSE A 323 MET SELENOMETHIONINE HET MSE A 69 8 HET MSE A 90 8 HET MSE A 109 8 HET MSE A 122 8 HET MSE A 156 8 HET MSE A 174 8 HET MSE A 175 8 HET MSE A 223 8 HET MSE A 230 8 HET MSE A 285 8 HET MSE A 323 8 HET PO4 A 401 5 HET PO4 A 402 5 HET PO4 A 403 5 HET PO4 A 404 5 HET NA A 405 1 HET NA A 406 1 HET NA A 407 1 HET NA A 408 1 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION HETNAM NA SODIUM ION FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 PO4 4(O4 P 3-) FORMUL 6 NA 4(NA 1+) FORMUL 10 HOH *109(H2 O) HELIX 1 1 ALA A 7 ALA A 21 1 15 HELIX 2 2 ASP A 33 GLN A 50 1 18 HELIX 3 3 PRO A 63 LYS A 67 5 5 HELIX 4 4 GLY A 71 ILE A 75 5 5 HELIX 5 5 TYR A 81 ALA A 92 1 12 HELIX 6 6 ALA A 102 ASP A 107 5 6 HELIX 7 7 MSE A 109 SER A 116 1 8 HELIX 8 8 SER A 144 MSE A 156 1 13 HELIX 9 9 TYR A 158 ILE A 162 5 5 HELIX 10 10 SER A 163 THR A 178 1 16 HELIX 11 11 ARG A 188 SER A 199 1 12 HELIX 12 12 ASP A 203 ASN A 213 1 11 HELIX 13 13 SER A 216 ASN A 229 1 14 HELIX 14 14 LYS A 234 TYR A 236 5 3 HELIX 15 15 THR A 244 PHE A 251 1 8 HELIX 16 16 GLY A 260 ILE A 268 5 9 HELIX 17 17 PRO A 297 PHE A 306 1 10 HELIX 18 18 THR A 322 TYR A 337 1 16 HELIX 19 19 TYR A 337 GLU A 343 1 7 SHEET 1 A 6 LEU A 76 LEU A 77 0 SHEET 2 A 6 ILE A 53 VAL A 58 1 N VAL A 56 O LEU A 76 SHEET 3 A 6 LYS A 23 VAL A 27 1 N ILE A 24 O ILE A 53 SHEET 4 A 6 VAL A 94 LEU A 98 1 O CYS A 96 N VAL A 25 SHEET 5 A 6 ARG A 119 ASP A 124 1 O ILE A 121 N CYS A 97 SHEET 6 A 6 ILE A 135 SER A 138 1 O ILE A 135 N MSE A 122 SHEET 1 B 6 LYS A 231 TYR A 233 0 SHEET 2 B 6 SER A 238 LEU A 243 -1 O LEU A 240 N LYS A 231 SHEET 3 B 6 PHE A 273 GLU A 279 1 O LEU A 277 N LEU A 243 SHEET 4 B 6 ILE A 286 SER A 292 -1 O LYS A 287 N ARG A 278 SHEET 5 B 6 ALA A 314 PHE A 319 -1 O GLY A 317 N ILE A 288 SHEET 6 B 6 GLY A 309 GLY A 310 -1 N GLY A 309 O GLY A 316 LINK C TRP A 68 N MSE A 69 1555 1555 1.33 LINK C MSE A 69 N PRO A 70 1555 1555 1.33 LINK C ILE A 89 N MSE A 90 1555 1555 1.33 LINK C MSE A 90 N GLU A 91 1555 1555 1.33 LINK C GLU A 108 N MSE A 109 1555 1555 1.33 LINK C MSE A 109 N SER A 110 1555 1555 1.33 LINK C ILE A 121 N MSE A 122 1555 1555 1.33 LINK C MSE A 122 N ILE A 123 1555 1555 1.33 LINK C ARG A 155 N MSE A 156 1555 1555 1.33 LINK C MSE A 156 N GLY A 157 1555 1555 1.33 LINK C GLY A 173 N MSE A 174 1555 1555 1.33 LINK C MSE A 174 N MSE A 175 1555 1555 1.33 LINK C MSE A 175 N THR A 176 1555 1555 1.33 LINK C LEU A 222 N MSE A 223 1555 1555 1.33 LINK C MSE A 223 N GLY A 224 1555 1555 1.33 LINK C ASN A 229 N MSE A 230 1555 1555 1.33 LINK C MSE A 230 N LYS A 231 1555 1555 1.33 LINK C MSE A 285 N ILE A 286 1555 1555 1.33 LINK C THR A 322 N MSE A 323 1555 1555 1.33 LINK C MSE A 323 N GLU A 324 1555 1555 1.33 LINK OG SER A 138 NA NA A 408 1555 1555 2.37 LINK O HIS A 126 NA NA A 408 1555 1555 2.43 LINK OD2 ASP A 33 NA NA A 406 1555 1555 2.88 LINK OD2 ASP A 124 NA NA A 408 1555 1555 2.96 LINK OD1 ASP A 177 NA NA A 406 1555 1555 3.09 LINK OG1 THR A 176 NA NA A 406 1555 1555 3.15 SITE 1 AC1 8 HIS A 29 ARG A 105 HIS A 126 HIS A 311 SITE 2 AC1 8 PO4 A 402 HOH A 558 HOH A 559 HOH A 564 SITE 1 AC2 9 HIS A 125 HIS A 126 ASP A 177 HIS A 311 SITE 2 AC2 9 PO4 A 401 HOH A 504 HOH A 538 HOH A 564 SITE 3 AC2 9 HOH A 606 SITE 1 AC3 8 LYS A 87 GLU A 91 LEU A 127 GLY A 310 SITE 2 AC3 8 HIS A 311 LEU A 312 HOH A 506 HOH A 538 SITE 1 AC4 6 GLU A 83 TYR A 183 ASN A 184 ASN A 186 SITE 2 AC4 6 ASP A 205 ARG A 209 SITE 1 AC5 1 ASN A 184 SITE 1 AC6 4 ASP A 33 ASP A 35 THR A 176 ASP A 177 SITE 1 AC7 4 VAL A 5 ILE A 6 ARG A 151 ARG A 155 SITE 1 AC8 4 ASN A 101 ASP A 124 HIS A 126 SER A 138 CRYST1 90.892 90.892 107.684 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011002 0.006352 0.000000 0.00000 SCALE2 0.000000 0.012704 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009286 0.00000