data_4PYA # _entry.id 4PYA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.298 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4PYA RCSB RCSB085370 WWPDB D_1000085370 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4PYD _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 4PYA _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-03-26 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tonthat, N.K.' 1 'Hover, B.M.' 2 'Yokoyama, K.' 3 'Schumacher, M.A.' 4 # _citation.id primary _citation.title 'Mechanism of pyranopterin ring formation in molybdenum cofactor biosynthesis.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 112 _citation.page_first 6347 _citation.page_last 6352 _citation.year 2015 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25941396 _citation.pdbx_database_id_DOI 10.1073/pnas.1500697112 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hover, B.M.' 1 ? primary 'Tonthat, N.K.' 2 ? primary 'Schumacher, M.A.' 3 ? primary 'Yokoyama, K.' 4 ? # _cell.length_a 89.933 _cell.length_b 89.933 _cell.length_c 62.446 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 4PYA _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.entry_id 4PYA _symmetry.Int_Tables_number 182 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Molybdenum cofactor biosynthesis protein MoaC' 17419.174 1 ? K51A MoaC ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 7 ? ? ? ? 3 non-polymer syn ;(8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate ; 523.180 1 ? ? ? ? 4 water nat water 18.015 52 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MAQLTHINAAGEAHMVDVSAKAETVREARAEAFVTMRSETLAMIIDGRHHAGDVFATARIAGIQAAKRTWDLIPLCHPLM LSKVEVNLQAEPEHNRVRIETLCRLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMVIGPVRLLAKSGGKSGDFKVEAD D ; _entity_poly.pdbx_seq_one_letter_code_can ;MAQLTHINAAGEAHMVDVSAKAETVREARAEAFVTMRSETLAMIIDGRHHAGDVFATARIAGIQAAKRTWDLIPLCHPLM LSKVEVNLQAEPEHNRVRIETLCRLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMVIGPVRLLAKSGGKSGDFKVEAD D ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 GLN n 1 4 LEU n 1 5 THR n 1 6 HIS n 1 7 ILE n 1 8 ASN n 1 9 ALA n 1 10 ALA n 1 11 GLY n 1 12 GLU n 1 13 ALA n 1 14 HIS n 1 15 MET n 1 16 VAL n 1 17 ASP n 1 18 VAL n 1 19 SER n 1 20 ALA n 1 21 LYS n 1 22 ALA n 1 23 GLU n 1 24 THR n 1 25 VAL n 1 26 ARG n 1 27 GLU n 1 28 ALA n 1 29 ARG n 1 30 ALA n 1 31 GLU n 1 32 ALA n 1 33 PHE n 1 34 VAL n 1 35 THR n 1 36 MET n 1 37 ARG n 1 38 SER n 1 39 GLU n 1 40 THR n 1 41 LEU n 1 42 ALA n 1 43 MET n 1 44 ILE n 1 45 ILE n 1 46 ASP n 1 47 GLY n 1 48 ARG n 1 49 HIS n 1 50 HIS n 1 51 ALA n 1 52 GLY n 1 53 ASP n 1 54 VAL n 1 55 PHE n 1 56 ALA n 1 57 THR n 1 58 ALA n 1 59 ARG n 1 60 ILE n 1 61 ALA n 1 62 GLY n 1 63 ILE n 1 64 GLN n 1 65 ALA n 1 66 ALA n 1 67 LYS n 1 68 ARG n 1 69 THR n 1 70 TRP n 1 71 ASP n 1 72 LEU n 1 73 ILE n 1 74 PRO n 1 75 LEU n 1 76 CYS n 1 77 HIS n 1 78 PRO n 1 79 LEU n 1 80 MET n 1 81 LEU n 1 82 SER n 1 83 LYS n 1 84 VAL n 1 85 GLU n 1 86 VAL n 1 87 ASN n 1 88 LEU n 1 89 GLN n 1 90 ALA n 1 91 GLU n 1 92 PRO n 1 93 GLU n 1 94 HIS n 1 95 ASN n 1 96 ARG n 1 97 VAL n 1 98 ARG n 1 99 ILE n 1 100 GLU n 1 101 THR n 1 102 LEU n 1 103 CYS n 1 104 ARG n 1 105 LEU n 1 106 THR n 1 107 GLY n 1 108 LYS n 1 109 THR n 1 110 GLY n 1 111 VAL n 1 112 GLU n 1 113 MET n 1 114 GLU n 1 115 ALA n 1 116 LEU n 1 117 THR n 1 118 ALA n 1 119 ALA n 1 120 SER n 1 121 VAL n 1 122 ALA n 1 123 ALA n 1 124 LEU n 1 125 THR n 1 126 ILE n 1 127 TYR n 1 128 ASP n 1 129 MET n 1 130 CYS n 1 131 LYS n 1 132 ALA n 1 133 VAL n 1 134 GLN n 1 135 LYS n 1 136 ASP n 1 137 MET n 1 138 VAL n 1 139 ILE n 1 140 GLY n 1 141 PRO n 1 142 VAL n 1 143 ARG n 1 144 LEU n 1 145 LEU n 1 146 ALA n 1 147 LYS n 1 148 SER n 1 149 GLY n 1 150 GLY n 1 151 LYS n 1 152 SER n 1 153 GLY n 1 154 ASP n 1 155 PHE n 1 156 LYS n 1 157 VAL n 1 158 GLU n 1 159 ALA n 1 160 ASP n 1 161 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain K-12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli K-12' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'C41(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code W0KCK5_ECOLX _struct_ref.pdbx_db_accession W0KCK5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSQLTHINAAGEAHMVDVSAKAETVREARAEAFVTMRSETLAMIIDGRHHKGDVFATARIAGIQAAKRTWDLIPLCHPLM LSKVEVNLQAEPEHNRVRIETLCRLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMVIGPVRLLAKSGGKSGDFKVEAD D ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4PYA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 161 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession W0KCK5 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 161 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 161 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4PYA ALA A 2 ? UNP W0KCK5 SER 2 'ENGINEERED MUTATION' 2 1 1 4PYA ALA A 51 ? UNP W0KCK5 LYS 51 'ENGINEERED MUTATION' 51 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2X3 non-polymer . ;(8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate ; ? 'C10 H16 N5 O14 P3' 523.180 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4PYA _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.09 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 41.22 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 9 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '35% PEG 1500 and 0.1 M MMT buffer (pH 9.0), VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID # _reflns.entry_id 4PYA _reflns.d_resolution_high 1.7890 _reflns.d_resolution_low 50.000 _reflns.number_obs 14516 _reflns.pdbx_Rmerge_I_obs 0.058 _reflns.pdbx_netI_over_sigmaI 15.000 _reflns.pdbx_chi_squared 1.863 _reflns.pdbx_redundancy 6.800 _reflns.percent_possible_obs 99.600 _reflns.B_iso_Wilson_estimate 34.040 _reflns.observed_criterion_sigma_F 2 _reflns.observed_criterion_sigma_I 2 _reflns.number_all 14516 _reflns.pdbx_Rsym_value ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.790 1.820 ? ? ? 0.675 ? ? 0.993 5.600 ? 689 99.600 1 1 1.820 1.850 ? ? ? 0.596 ? ? 0.971 6.600 ? 720 99.400 2 1 1.850 1.890 ? ? ? 0.459 ? ? 0.987 6.900 ? 710 100.000 3 1 1.890 1.930 ? ? ? 0.382 ? ? 0.995 7.100 ? 695 99.900 4 1 1.930 1.970 ? ? ? 0.293 ? ? 1.089 7.100 ? 711 100.000 5 1 1.970 2.020 ? ? ? 0.219 ? ? 1.083 7.100 ? 719 100.000 6 1 2.020 2.070 ? ? ? 0.187 ? ? 1.120 7.100 ? 716 100.000 7 1 2.070 2.120 ? ? ? 0.152 ? ? 1.192 7.100 ? 701 100.000 8 1 2.120 2.180 ? ? ? 0.133 ? ? 1.281 7.100 ? 728 100.000 9 1 2.180 2.260 ? ? ? 0.116 ? ? 1.463 7.100 ? 717 99.900 10 1 2.260 2.340 ? ? ? 0.102 ? ? 1.643 7.100 ? 724 100.000 11 1 2.340 2.430 ? ? ? 0.087 ? ? 1.826 7.100 ? 718 100.000 12 1 2.430 2.540 ? ? ? 0.081 ? ? 2.080 7.000 ? 719 100.000 13 1 2.540 2.670 ? ? ? 0.067 ? ? 2.163 7.000 ? 729 100.000 14 1 2.670 2.840 ? ? ? 0.061 ? ? 2.348 6.900 ? 727 100.000 15 1 2.840 3.060 ? ? ? 0.060 ? ? 2.718 6.800 ? 737 100.000 16 1 3.060 3.370 ? ? ? 0.059 ? ? 3.423 6.600 ? 733 99.700 17 1 3.370 3.860 ? ? ? 0.050 ? ? 3.441 6.400 ? 747 99.300 18 1 3.860 4.860 ? ? ? 0.046 ? ? 3.342 6.300 ? 763 99.300 19 1 4.860 50.000 ? ? ? 0.044 ? ? 3.329 5.600 ? 813 96.400 20 1 # _refine.entry_id 4PYA _refine.ls_d_res_high 1.7890 _refine.ls_d_res_low 29.4370 _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.6400 _refine.ls_number_reflns_obs 14505 _refine.ls_number_reflns_all 14505 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all 0.1758 _refine.ls_R_factor_obs 0.1758 _refine.ls_R_factor_R_work 0.1738 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1935 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 10.0000 _refine.ls_number_reflns_R_free 1450 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 47.3600 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.1500 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDBID: 1EKR' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8577 _refine.B_iso_max 157.390 _refine.B_iso_min 24.940 _refine.pdbx_overall_phase_error 20.1400 _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 949 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 60 _refine_hist.number_atoms_solvent 52 _refine_hist.number_atoms_total 1061 _refine_hist.d_res_high 1.7890 _refine_hist.d_res_low 29.4370 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 1017 0.009 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1373 1.408 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 167 0.102 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 167 0.009 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 427 16.998 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 1.7891 1.8531 10 99.0000 1258 . 0.2475 0.2971 . 139 . 1397 . . 'X-RAY DIFFRACTION' 1.8531 1.9273 10 100.0000 1265 . 0.2144 0.2419 . 142 . 1407 . . 'X-RAY DIFFRACTION' 1.9273 2.0150 10 100.0000 1284 . 0.1873 0.2007 . 142 . 1426 . . 'X-RAY DIFFRACTION' 2.0150 2.1212 10 100.0000 1280 . 0.1748 0.2086 . 143 . 1423 . . 'X-RAY DIFFRACTION' 2.1212 2.2540 10 100.0000 1296 . 0.1789 0.2346 . 143 . 1439 . . 'X-RAY DIFFRACTION' 2.2540 2.4280 10 100.0000 1304 . 0.1812 0.2196 . 145 . 1449 . . 'X-RAY DIFFRACTION' 2.4280 2.6722 10 100.0000 1297 . 0.1844 0.2192 . 144 . 1441 . . 'X-RAY DIFFRACTION' 2.6722 3.0585 10 100.0000 1318 . 0.1775 0.1915 . 147 . 1465 . . 'X-RAY DIFFRACTION' 3.0585 3.8520 10 100.0000 1334 . 0.1753 0.1931 . 148 . 1482 . . 'X-RAY DIFFRACTION' 3.8520 29.4415 10 98.0000 1419 . 0.1586 0.1665 . 157 . 1576 . . 'X-RAY DIFFRACTION' # _struct.entry_id 4PYA _struct.title ;MoaC K51A in complex with 3',8-cH2GTP ; _struct.pdbx_descriptor 'Molybdenum cofactor biosynthesis protein MoaC' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4PYA _struct_keywords.pdbx_keywords TRANSLATION _struct_keywords.text 'MoaC, Molybdenum Cofactor, Moco, TRANSLATION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 37 ? GLY A 47 ? ARG A 37 GLY A 47 1 ? 11 HELX_P HELX_P2 2 ASP A 53 ? ARG A 68 ? ASP A 53 ARG A 68 1 ? 16 HELX_P HELX_P3 3 ARG A 68 ? ILE A 73 ? ARG A 68 ILE A 73 1 ? 6 HELX_P HELX_P4 4 PRO A 92 ? HIS A 94 ? PRO A 92 HIS A 94 5 ? 3 HELX_P HELX_P5 5 VAL A 111 ? LYS A 131 ? VAL A 111 LYS A 131 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 140 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 140 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 141 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 141 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.39 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 83 ? GLU A 91 ? LYS A 83 GLU A 91 A 2 ARG A 96 ? GLY A 107 ? ARG A 96 GLY A 107 A 3 THR A 24 ? THR A 35 ? THR A 24 THR A 35 A 4 VAL A 138 ? LEU A 145 ? VAL A 138 LEU A 145 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 91 ? N GLU A 91 O ARG A 96 ? O ARG A 96 A 2 3 O ILE A 99 ? O ILE A 99 N ALA A 32 ? N ALA A 32 A 3 4 N ARG A 29 ? N ARG A 29 O LEU A 145 ? O LEU A 145 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE EDO A 201' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE EDO A 202' AC3 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE EDO A 203' AC4 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE EDO A 204' AC5 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE EDO A 205' AC6 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE EDO A 206' AC7 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE EDO A 207' AC8 Software ? ? ? ? 10 'BINDING SITE FOR RESIDUE 2X3 A 208' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASN A 87 ? ASN A 87 . ? 1_555 ? 2 AC1 5 GLN A 89 ? GLN A 89 . ? 1_555 ? 3 AC1 5 ARG A 98 ? ARG A 98 . ? 1_555 ? 4 AC1 5 GLU A 100 ? GLU A 100 . ? 1_555 ? 5 AC1 5 HOH J . ? HOH A 333 . ? 1_555 ? 6 AC2 2 ALA A 146 ? ALA A 146 . ? 1_555 ? 7 AC2 2 HOH J . ? HOH A 309 . ? 1_555 ? 8 AC3 3 MET A 43 ? MET A 43 . ? 1_555 ? 9 AC3 3 MET A 129 ? MET A 129 . ? 1_555 ? 10 AC3 3 CYS A 130 ? CYS A 130 . ? 1_555 ? 11 AC4 7 LYS A 67 ? LYS A 67 . ? 2_565 ? 12 AC4 7 LEU A 75 ? LEU A 75 . ? 1_555 ? 13 AC4 7 CYS A 76 ? CYS A 76 . ? 1_555 ? 14 AC4 7 HIS A 77 ? HIS A 77 . ? 1_555 ? 15 AC4 7 PRO A 78 ? PRO A 78 . ? 1_555 ? 16 AC4 7 LEU A 81 ? LEU A 81 . ? 2_565 ? 17 AC4 7 HOH J . ? HOH A 336 . ? 1_555 ? 18 AC5 2 ARG A 96 ? ARG A 96 . ? 1_555 ? 19 AC5 2 ARG A 143 ? ARG A 143 . ? 1_555 ? 20 AC6 3 GLY A 140 ? GLY A 140 . ? 1_555 ? 21 AC6 3 PRO A 141 ? PRO A 141 . ? 1_555 ? 22 AC6 3 HOH J . ? HOH A 339 . ? 1_555 ? 23 AC7 1 GLY A 52 ? GLY A 52 . ? 1_555 ? 24 AC8 10 LEU A 75 ? LEU A 75 . ? 1_555 ? 25 AC8 10 CYS A 76 ? CYS A 76 . ? 1_555 ? 26 AC8 10 HIS A 77 ? HIS A 77 . ? 1_555 ? 27 AC8 10 LEU A 79 ? LEU A 79 . ? 1_555 ? 28 AC8 10 THR A 109 ? THR A 109 . ? 1_555 ? 29 AC8 10 GLY A 110 ? GLY A 110 . ? 1_555 ? 30 AC8 10 GLU A 112 ? GLU A 112 . ? 1_555 ? 31 AC8 10 MET A 113 ? MET A 113 . ? 1_555 ? 32 AC8 10 GLU A 114 ? GLU A 114 . ? 1_555 ? 33 AC8 10 HOH J . ? HOH A 351 . ? 1_555 ? # _atom_sites.entry_id 4PYA _atom_sites.fract_transf_matrix[1][1] 0.011119 _atom_sites.fract_transf_matrix[1][2] 0.006420 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012840 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016014 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ALA 2 2 ? ? ? A . n A 1 3 GLN 3 3 ? ? ? A . n A 1 4 LEU 4 4 ? ? ? A . n A 1 5 THR 5 5 ? ? ? A . n A 1 6 HIS 6 6 ? ? ? A . n A 1 7 ILE 7 7 ? ? ? A . n A 1 8 ASN 8 8 ? ? ? A . n A 1 9 ALA 9 9 ? ? ? A . n A 1 10 ALA 10 10 ? ? ? A . n A 1 11 GLY 11 11 ? ? ? A . n A 1 12 GLU 12 12 ? ? ? A . n A 1 13 ALA 13 13 ? ? ? A . n A 1 14 HIS 14 14 ? ? ? A . n A 1 15 MET 15 15 ? ? ? A . n A 1 16 VAL 16 16 ? ? ? A . n A 1 17 ASP 17 17 ? ? ? A . n A 1 18 VAL 18 18 ? ? ? A . n A 1 19 SER 19 19 ? ? ? A . n A 1 20 ALA 20 20 ? ? ? A . n A 1 21 LYS 21 21 ? ? ? A . n A 1 22 ALA 22 22 ? ? ? A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 MET 36 36 36 MET MET A . n A 1 37 ARG 37 37 37 ARG ARG A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 MET 43 43 43 MET MET A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 ASP 46 46 46 ASP ASP A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 HIS 49 49 49 HIS HIS A . n A 1 50 HIS 50 50 50 HIS HIS A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 PHE 55 55 55 PHE PHE A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 GLN 64 64 64 GLN GLN A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 TRP 70 70 70 TRP TRP A . n A 1 71 ASP 71 71 71 ASP ASP A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 PRO 74 74 74 PRO PRO A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 CYS 76 76 76 CYS CYS A . n A 1 77 HIS 77 77 77 HIS HIS A . n A 1 78 PRO 78 78 78 PRO PRO A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 MET 80 80 80 MET MET A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 SER 82 82 82 SER SER A . n A 1 83 LYS 83 83 83 LYS LYS A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 VAL 86 86 86 VAL VAL A . n A 1 87 ASN 87 87 87 ASN ASN A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 GLN 89 89 89 GLN GLN A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 PRO 92 92 92 PRO PRO A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 HIS 94 94 94 HIS HIS A . n A 1 95 ASN 95 95 95 ASN ASN A . n A 1 96 ARG 96 96 96 ARG ARG A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 ARG 98 98 98 ARG ARG A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 THR 101 101 101 THR THR A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 CYS 103 103 103 CYS CYS A . n A 1 104 ARG 104 104 104 ARG ARG A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 LYS 108 108 108 LYS LYS A . n A 1 109 THR 109 109 109 THR THR A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 GLU 112 112 112 GLU GLU A . n A 1 113 MET 113 113 113 MET MET A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 ALA 115 115 115 ALA ALA A . n A 1 116 LEU 116 116 116 LEU LEU A . n A 1 117 THR 117 117 117 THR THR A . n A 1 118 ALA 118 118 118 ALA ALA A . n A 1 119 ALA 119 119 119 ALA ALA A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 VAL 121 121 121 VAL VAL A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 ALA 123 123 123 ALA ALA A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 THR 125 125 125 THR THR A . n A 1 126 ILE 126 126 126 ILE ILE A . n A 1 127 TYR 127 127 127 TYR TYR A . n A 1 128 ASP 128 128 128 ASP ASP A . n A 1 129 MET 129 129 129 MET MET A . n A 1 130 CYS 130 130 130 CYS CYS A . n A 1 131 LYS 131 131 131 LYS LYS A . n A 1 132 ALA 132 132 132 ALA ALA A . n A 1 133 VAL 133 133 133 VAL VAL A . n A 1 134 GLN 134 134 134 GLN GLN A . n A 1 135 LYS 135 135 135 LYS LYS A . n A 1 136 ASP 136 136 136 ASP ASP A . n A 1 137 MET 137 137 137 MET MET A . n A 1 138 VAL 138 138 138 VAL VAL A . n A 1 139 ILE 139 139 139 ILE ILE A . n A 1 140 GLY 140 140 140 GLY GLY A . n A 1 141 PRO 141 141 141 PRO PRO A . n A 1 142 VAL 142 142 142 VAL VAL A . n A 1 143 ARG 143 143 143 ARG ARG A . n A 1 144 LEU 144 144 144 LEU LEU A . n A 1 145 LEU 145 145 145 LEU LEU A . n A 1 146 ALA 146 146 146 ALA ALA A . n A 1 147 LYS 147 147 ? ? ? A . n A 1 148 SER 148 148 ? ? ? A . n A 1 149 GLY 149 149 ? ? ? A . n A 1 150 GLY 150 150 ? ? ? A . n A 1 151 LYS 151 151 ? ? ? A . n A 1 152 SER 152 152 ? ? ? A . n A 1 153 GLY 153 153 ? ? ? A . n A 1 154 ASP 154 154 ? ? ? A . n A 1 155 PHE 155 155 ? ? ? A . n A 1 156 LYS 156 156 ? ? ? A . n A 1 157 VAL 157 157 ? ? ? A . n A 1 158 GLU 158 158 ? ? ? A . n A 1 159 ALA 159 159 ? ? ? A . n A 1 160 ASP 160 160 ? ? ? A . n A 1 161 ASP 161 161 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO 1 201 1 EDO EDO A . C 2 EDO 1 202 3 EDO EDO A . D 2 EDO 1 203 5 EDO EDO A . E 2 EDO 1 204 6 EDO EDO A . F 2 EDO 1 205 8 EDO EDO A . G 2 EDO 1 206 9 EDO EDO A . H 2 EDO 1 207 10 EDO EDO A . I 3 2X3 1 208 1 2X3 CDG A . J 4 HOH 1 301 1 HOH HOH A . J 4 HOH 2 302 2 HOH HOH A . J 4 HOH 3 303 3 HOH HOH A . J 4 HOH 4 304 4 HOH HOH A . J 4 HOH 5 305 5 HOH HOH A . J 4 HOH 6 306 6 HOH HOH A . J 4 HOH 7 307 7 HOH HOH A . J 4 HOH 8 308 8 HOH HOH A . J 4 HOH 9 309 9 HOH HOH A . J 4 HOH 10 310 10 HOH HOH A . J 4 HOH 11 311 11 HOH HOH A . J 4 HOH 12 312 12 HOH HOH A . J 4 HOH 13 313 13 HOH HOH A . J 4 HOH 14 314 15 HOH HOH A . J 4 HOH 15 315 16 HOH HOH A . J 4 HOH 16 316 17 HOH HOH A . J 4 HOH 17 317 18 HOH HOH A . J 4 HOH 18 318 19 HOH HOH A . J 4 HOH 19 319 20 HOH HOH A . J 4 HOH 20 320 21 HOH HOH A . J 4 HOH 21 321 22 HOH HOH A . J 4 HOH 22 322 23 HOH HOH A . J 4 HOH 23 323 24 HOH HOH A . J 4 HOH 24 324 25 HOH HOH A . J 4 HOH 25 325 26 HOH HOH A . J 4 HOH 26 326 27 HOH HOH A . J 4 HOH 27 327 28 HOH HOH A . J 4 HOH 28 328 29 HOH HOH A . J 4 HOH 29 329 30 HOH HOH A . J 4 HOH 30 330 31 HOH HOH A . J 4 HOH 31 331 32 HOH HOH A . J 4 HOH 32 332 33 HOH HOH A . J 4 HOH 33 333 34 HOH HOH A . J 4 HOH 34 334 35 HOH HOH A . J 4 HOH 35 335 36 HOH HOH A . J 4 HOH 36 336 37 HOH HOH A . J 4 HOH 37 337 38 HOH HOH A . J 4 HOH 38 338 39 HOH HOH A . J 4 HOH 39 339 40 HOH HOH A . J 4 HOH 40 340 41 HOH HOH A . J 4 HOH 41 341 42 HOH HOH A . J 4 HOH 42 342 43 HOH HOH A . J 4 HOH 43 343 44 HOH HOH A . J 4 HOH 44 344 45 HOH HOH A . J 4 HOH 45 345 46 HOH HOH A . J 4 HOH 46 346 47 HOH HOH A . J 4 HOH 47 347 48 HOH HOH A . J 4 HOH 48 348 49 HOH HOH A . J 4 HOH 49 349 51 HOH HOH A . J 4 HOH 50 350 54 HOH HOH A . J 4 HOH 51 351 55 HOH HOH A . J 4 HOH 52 352 57 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2670 ? 1 MORE -15 ? 1 'SSA (A^2)' 18640 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 -44.9665000000 0.8660254038 -0.5000000000 0.0000000000 77.8842626385 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5000000000 0.8660254038 0.0000000000 -89.9330000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id EDO _pdbx_struct_special_symmetry.auth_seq_id 206 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id G _pdbx_struct_special_symmetry.label_comp_id EDO _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-04-29 2 'Structure model' 1 1 2015-05-06 3 'Structure model' 1 2 2015-06-03 4 'Structure model' 1 3 2017-11-22 5 'Structure model' 1 4 2018-08-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Source and taxonomy' 6 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' entity 3 5 'Structure model' entity_src_gen 4 5 'Structure model' entity_src_nat # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 5 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_entity.src_method' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -70.1062 23.7900 199.6618 0.2001 0.3336 0.2497 0.0504 -0.0736 0.0121 6.8108 3.6347 6.5664 -0.2165 -4.3408 1.0174 0.0176 -0.1184 0.0441 0.5302 0.0036 0.3785 -0.1451 -0.2105 -0.4684 'X-RAY DIFFRACTION' 2 ? refined -71.0088 37.8030 206.1517 1.2735 0.9330 1.3019 0.4213 -0.0495 0.0689 5.9249 0.5902 8.2084 -0.5407 -6.8882 0.9562 -0.6856 0.9576 -0.0573 -0.2282 3.9452 1.9872 0.1261 -3.8283 -3.4782 'X-RAY DIFFRACTION' 3 ? refined -54.6116 24.3834 196.4280 0.2770 0.2837 0.3125 -0.0661 -0.0068 -0.0038 4.8398 9.0695 4.4901 -5.3859 -2.2223 2.2941 0.0012 0.0251 0.0099 0.1310 0.4155 -0.6727 -0.1845 -0.1246 0.3017 'X-RAY DIFFRACTION' 4 ? refined -72.4099 26.2113 197.0093 0.4272 0.4680 0.3977 0.0209 -0.0185 -0.0215 9.2971 4.9542 5.8425 6.1691 -3.4461 -4.2860 -0.6584 0.6194 0.0238 1.9152 0.3665 0.4095 -0.5100 0.2065 -1.7309 'X-RAY DIFFRACTION' 5 ? refined -65.0621 20.6636 199.5754 0.1696 0.2078 0.2420 0.0004 -0.0164 -0.0226 5.3033 2.7754 8.4374 -0.9656 -3.2871 0.4128 -0.0346 -0.0110 0.0635 0.3508 0.0510 0.1614 -0.1992 -0.0102 -0.1278 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 0 ;chain 'A' and (resid 23 through 47 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 0 A 0 ;chain 'A' and (resid 48 through 53 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 0 A 0 ;chain 'A' and (resid 54 through 82 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 0 A 0 ;chain 'A' and (resid 83 through 94 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 0 A 0 ;chain 'A' and (resid 95 through 146 ) ; ? ? ? ? ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHENIX 1.8.4_1496 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 4 PDB_EXTRACT 3.14 'Dec. 10, 2013' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 7 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 8 PHASER . ? ? ? ? phasing ? ? ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ALA 2 ? A ALA 2 3 1 Y 1 A GLN 3 ? A GLN 3 4 1 Y 1 A LEU 4 ? A LEU 4 5 1 Y 1 A THR 5 ? A THR 5 6 1 Y 1 A HIS 6 ? A HIS 6 7 1 Y 1 A ILE 7 ? A ILE 7 8 1 Y 1 A ASN 8 ? A ASN 8 9 1 Y 1 A ALA 9 ? A ALA 9 10 1 Y 1 A ALA 10 ? A ALA 10 11 1 Y 1 A GLY 11 ? A GLY 11 12 1 Y 1 A GLU 12 ? A GLU 12 13 1 Y 1 A ALA 13 ? A ALA 13 14 1 Y 1 A HIS 14 ? A HIS 14 15 1 Y 1 A MET 15 ? A MET 15 16 1 Y 1 A VAL 16 ? A VAL 16 17 1 Y 1 A ASP 17 ? A ASP 17 18 1 Y 1 A VAL 18 ? A VAL 18 19 1 Y 1 A SER 19 ? A SER 19 20 1 Y 1 A ALA 20 ? A ALA 20 21 1 Y 1 A LYS 21 ? A LYS 21 22 1 Y 1 A ALA 22 ? A ALA 22 23 1 Y 1 A LYS 147 ? A LYS 147 24 1 Y 1 A SER 148 ? A SER 148 25 1 Y 1 A GLY 149 ? A GLY 149 26 1 Y 1 A GLY 150 ? A GLY 150 27 1 Y 1 A LYS 151 ? A LYS 151 28 1 Y 1 A SER 152 ? A SER 152 29 1 Y 1 A GLY 153 ? A GLY 153 30 1 Y 1 A ASP 154 ? A ASP 154 31 1 Y 1 A PHE 155 ? A PHE 155 32 1 Y 1 A LYS 156 ? A LYS 156 33 1 Y 1 A VAL 157 ? A VAL 157 34 1 Y 1 A GLU 158 ? A GLU 158 35 1 Y 1 A ALA 159 ? A ALA 159 36 1 Y 1 A ASP 160 ? A ASP 160 37 1 Y 1 A ASP 161 ? A ASP 161 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 ;(8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate ; 2X3 4 water HOH #