HEADER PROTEIN BINDING/ALLERGEN 28-MAR-14 4PYU TITLE THE CONSERVED UBIQUITIN-LIKE PROTEIN HUB1 PLAYS A CRITICAL ROLE IN TITLE 2 SPLICING IN HUMAN CELLS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-LIKE PROTEIN 5; COMPND 3 CHAIN: A, B, G, K, O, S; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: U4/U6.U5 TRI-SNRNP-ASSOCIATED PROTEIN 1; COMPND 7 CHAIN: C, D, H, L, P, T; COMPND 8 FRAGMENT: UBL5 BINDING MOTIF (UNP RESIDUES 117-135); COMPND 9 SYNONYM: SNU66 HOMOLOG, HSNU66, SQUAMOUS CELL CARCINOMA ANTIGEN COMPND 10 RECOGNIZED BY T-CELLS 1, SART-1, HSART-1, U4/U6.U5 TRI-SNRNP- COMPND 11 ASSOCIATED 110 KDA PROTEIN; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBL5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS UBIQUITIN-LIKE, PRE-MRNA SPLICING, PROTEIN BINDING-ALLERGEN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.AMMON,S.K.MISHRA,K.KOWALSKA,G.M.POPOWICZ,T.A.HOLAK,S.JENTSCH REVDAT 4 28-FEB-24 4PYU 1 SEQADV REVDAT 3 22-NOV-17 4PYU 1 REMARK REVDAT 2 06-AUG-14 4PYU 1 JRNL REVDAT 1 16-JUL-14 4PYU 0 JRNL AUTH T.AMMON,S.K.MISHRA,K.KOWALSKA,G.M.POPOWICZ,T.A.HOLAK, JRNL AUTH 2 S.JENTSCH JRNL TITL THE CONSERVED UBIQUITIN-LIKE PROTEIN HUB1 PLAYS A CRITICAL JRNL TITL 2 ROLE IN SPLICING IN HUMAN CELLS. JRNL REF J MOL CELL BIOL V. 6 312 2014 JRNL REFN ISSN 1674-2788 JRNL PMID 24872507 JRNL DOI 10.1093/JMCB/MJU026 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 3 NUMBER OF REFLECTIONS : 34641 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1840 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1726 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 60.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.1890 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4454 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 287 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.217 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.194 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.568 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4517 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4423 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6091 ; 1.847 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10168 ; 0.889 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 551 ; 6.468 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 187 ;36.555 ;25.187 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 860 ;17.610 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;19.130 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 710 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4956 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 959 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4PYU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085390. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41837 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.34800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.480 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 0.15 M SODIUM ACETATE, REMARK 280 20% W/V PEG4000, PH 9.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.75500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.81500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.75500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.81500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: O, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: S, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -2 REMARK 465 GLY G -2 REMARK 465 SER G -1 REMARK 465 GLY K -2 REMARK 465 SER K -1 REMARK 465 GLY O -2 REMARK 465 GLY S -2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CE REMARK 470 ARG A 9 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 13 NZ REMARK 470 ARG A 38 CD NE CZ NH1 NH2 REMARK 470 LYS A 41 CE NZ REMARK 470 LYS A 45 NZ REMARK 470 LYS A 52 CD CE NZ REMARK 470 ARG B 9 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 13 CE NZ REMARK 470 LYS B 29 NZ REMARK 470 ARG B 38 CD NE CZ NH1 NH2 REMARK 470 LYS B 52 CD CE NZ REMARK 470 GLU B 61 CG CD OE1 OE2 REMARK 470 LYS C 12 CD CE REMARK 470 LYS D 12 CD CE NZ REMARK 470 MET G 1 CE REMARK 470 ARG G 38 CD NE CZ NH1 NH2 REMARK 470 LYS G 41 CG CD CE NZ REMARK 470 LYS G 45 CE NZ REMARK 470 LYS H 8 NZ REMARK 470 LYS H 12 CD CE NZ REMARK 470 ARG K 9 CG CD NE CZ NH1 NH2 REMARK 470 LEU K 10 CG CD1 CD2 REMARK 470 ARG K 38 CG CD NE CZ NH1 NH2 REMARK 470 LYS K 41 CG CD CE NZ REMARK 470 LYS K 45 CE NZ REMARK 470 LYS L 8 CE NZ REMARK 470 LEU O 10 CG CD1 CD2 REMARK 470 ARG O 38 NE CZ NH1 NH2 REMARK 470 LYS O 52 CD CE NZ REMARK 470 GLU P 4 CD OE1 OE2 REMARK 470 LYS P 12 NZ REMARK 470 LYS P 16 CD NZ REMARK 470 ARG S 9 CG CD NE CZ NH1 NH2 REMARK 470 LYS S 13 NZ REMARK 470 LYS S 45 CE NZ REMARK 470 LYS S 52 CD CE NZ REMARK 470 LYS T 8 NZ REMARK 470 LYS T 16 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH S 111 O HOH S 126 1.95 REMARK 500 N SER P 0 O HOH P 103 2.13 REMARK 500 O GLY A -2 O HOH A 131 2.15 REMARK 500 OG SER C 0 O HOH C 106 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 14 CB - CA - C ANGL. DEV. = -17.4 DEGREES REMARK 500 ARG A 15 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 15 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 VAL B 14 CB - CA - C ANGL. DEV. = -12.9 DEGREES REMARK 500 ARG B 15 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 15 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP G 8 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG O 9 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 37 -164.07 -113.90 REMARK 500 TRP A 47 -105.20 56.10 REMARK 500 THR B 37 -159.03 -136.92 REMARK 500 TRP B 47 -105.78 51.02 REMARK 500 THR G 37 -168.36 -111.05 REMARK 500 TRP G 47 -101.81 68.33 REMARK 500 TRP K 39 36.94 -67.66 REMARK 500 ASN K 40 -40.74 -142.40 REMARK 500 LYS K 41 4.18 -66.35 REMARK 500 TRP K 47 -105.70 59.21 REMARK 500 TRP O 47 -107.28 63.91 REMARK 500 TRP S 47 -98.72 68.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PLU RELATED DB: PDB REMARK 900 YEAST HOMOLOG DBREF 4PYU A 1 73 UNP Q9BZL1 UBL5_HUMAN 1 73 DBREF 4PYU B 1 73 UNP Q9BZL1 UBL5_HUMAN 1 73 DBREF 4PYU C 0 18 UNP O43290 SNUT1_HUMAN 117 135 DBREF 4PYU D 0 18 UNP O43290 SNUT1_HUMAN 117 135 DBREF 4PYU G 1 73 UNP Q9BZL1 UBL5_HUMAN 1 73 DBREF 4PYU H 0 18 UNP O43290 SNUT1_HUMAN 117 135 DBREF 4PYU K 1 73 UNP Q9BZL1 UBL5_HUMAN 1 73 DBREF 4PYU L 0 18 UNP O43290 SNUT1_HUMAN 117 135 DBREF 4PYU O 1 73 UNP Q9BZL1 UBL5_HUMAN 1 73 DBREF 4PYU P 0 18 UNP O43290 SNUT1_HUMAN 117 135 DBREF 4PYU S 1 73 UNP Q9BZL1 UBL5_HUMAN 1 73 DBREF 4PYU T 0 18 UNP O43290 SNUT1_HUMAN 117 135 SEQADV 4PYU GLY A -2 UNP Q9BZL1 EXPRESSION TAG SEQADV 4PYU SER A -1 UNP Q9BZL1 EXPRESSION TAG SEQADV 4PYU HIS A 0 UNP Q9BZL1 EXPRESSION TAG SEQADV 4PYU GLY B -2 UNP Q9BZL1 EXPRESSION TAG SEQADV 4PYU SER B -1 UNP Q9BZL1 EXPRESSION TAG SEQADV 4PYU HIS B 0 UNP Q9BZL1 EXPRESSION TAG SEQADV 4PYU GLY G -2 UNP Q9BZL1 EXPRESSION TAG SEQADV 4PYU SER G -1 UNP Q9BZL1 EXPRESSION TAG SEQADV 4PYU HIS G 0 UNP Q9BZL1 EXPRESSION TAG SEQADV 4PYU GLY K -2 UNP Q9BZL1 EXPRESSION TAG SEQADV 4PYU SER K -1 UNP Q9BZL1 EXPRESSION TAG SEQADV 4PYU HIS K 0 UNP Q9BZL1 EXPRESSION TAG SEQADV 4PYU GLY O -2 UNP Q9BZL1 EXPRESSION TAG SEQADV 4PYU SER O -1 UNP Q9BZL1 EXPRESSION TAG SEQADV 4PYU HIS O 0 UNP Q9BZL1 EXPRESSION TAG SEQADV 4PYU GLY S -2 UNP Q9BZL1 EXPRESSION TAG SEQADV 4PYU SER S -1 UNP Q9BZL1 EXPRESSION TAG SEQADV 4PYU HIS S 0 UNP Q9BZL1 EXPRESSION TAG SEQRES 1 A 76 GLY SER HIS MET ILE GLU VAL VAL CYS ASN ASP ARG LEU SEQRES 2 A 76 GLY LYS LYS VAL ARG VAL LYS CYS ASN THR ASP ASP THR SEQRES 3 A 76 ILE GLY ASP LEU LYS LYS LEU ILE ALA ALA GLN THR GLY SEQRES 4 A 76 THR ARG TRP ASN LYS ILE VAL LEU LYS LYS TRP TYR THR SEQRES 5 A 76 ILE PHE LYS ASP HIS VAL SER LEU GLY ASP TYR GLU ILE SEQRES 6 A 76 HIS ASP GLY MET ASN LEU GLU LEU TYR TYR GLN SEQRES 1 B 76 GLY SER HIS MET ILE GLU VAL VAL CYS ASN ASP ARG LEU SEQRES 2 B 76 GLY LYS LYS VAL ARG VAL LYS CYS ASN THR ASP ASP THR SEQRES 3 B 76 ILE GLY ASP LEU LYS LYS LEU ILE ALA ALA GLN THR GLY SEQRES 4 B 76 THR ARG TRP ASN LYS ILE VAL LEU LYS LYS TRP TYR THR SEQRES 5 B 76 ILE PHE LYS ASP HIS VAL SER LEU GLY ASP TYR GLU ILE SEQRES 6 B 76 HIS ASP GLY MET ASN LEU GLU LEU TYR TYR GLN SEQRES 1 C 19 SER LEU SER ILE GLU GLU THR ASN LYS LEU ARG ALA LYS SEQRES 2 C 19 LEU GLY LEU LYS PRO LEU SEQRES 1 D 19 SER LEU SER ILE GLU GLU THR ASN LYS LEU ARG ALA LYS SEQRES 2 D 19 LEU GLY LEU LYS PRO LEU SEQRES 1 G 76 GLY SER HIS MET ILE GLU VAL VAL CYS ASN ASP ARG LEU SEQRES 2 G 76 GLY LYS LYS VAL ARG VAL LYS CYS ASN THR ASP ASP THR SEQRES 3 G 76 ILE GLY ASP LEU LYS LYS LEU ILE ALA ALA GLN THR GLY SEQRES 4 G 76 THR ARG TRP ASN LYS ILE VAL LEU LYS LYS TRP TYR THR SEQRES 5 G 76 ILE PHE LYS ASP HIS VAL SER LEU GLY ASP TYR GLU ILE SEQRES 6 G 76 HIS ASP GLY MET ASN LEU GLU LEU TYR TYR GLN SEQRES 1 H 19 SER LEU SER ILE GLU GLU THR ASN LYS LEU ARG ALA LYS SEQRES 2 H 19 LEU GLY LEU LYS PRO LEU SEQRES 1 K 76 GLY SER HIS MET ILE GLU VAL VAL CYS ASN ASP ARG LEU SEQRES 2 K 76 GLY LYS LYS VAL ARG VAL LYS CYS ASN THR ASP ASP THR SEQRES 3 K 76 ILE GLY ASP LEU LYS LYS LEU ILE ALA ALA GLN THR GLY SEQRES 4 K 76 THR ARG TRP ASN LYS ILE VAL LEU LYS LYS TRP TYR THR SEQRES 5 K 76 ILE PHE LYS ASP HIS VAL SER LEU GLY ASP TYR GLU ILE SEQRES 6 K 76 HIS ASP GLY MET ASN LEU GLU LEU TYR TYR GLN SEQRES 1 L 19 SER LEU SER ILE GLU GLU THR ASN LYS LEU ARG ALA LYS SEQRES 2 L 19 LEU GLY LEU LYS PRO LEU SEQRES 1 O 76 GLY SER HIS MET ILE GLU VAL VAL CYS ASN ASP ARG LEU SEQRES 2 O 76 GLY LYS LYS VAL ARG VAL LYS CYS ASN THR ASP ASP THR SEQRES 3 O 76 ILE GLY ASP LEU LYS LYS LEU ILE ALA ALA GLN THR GLY SEQRES 4 O 76 THR ARG TRP ASN LYS ILE VAL LEU LYS LYS TRP TYR THR SEQRES 5 O 76 ILE PHE LYS ASP HIS VAL SER LEU GLY ASP TYR GLU ILE SEQRES 6 O 76 HIS ASP GLY MET ASN LEU GLU LEU TYR TYR GLN SEQRES 1 P 19 SER LEU SER ILE GLU GLU THR ASN LYS LEU ARG ALA LYS SEQRES 2 P 19 LEU GLY LEU LYS PRO LEU SEQRES 1 S 76 GLY SER HIS MET ILE GLU VAL VAL CYS ASN ASP ARG LEU SEQRES 2 S 76 GLY LYS LYS VAL ARG VAL LYS CYS ASN THR ASP ASP THR SEQRES 3 S 76 ILE GLY ASP LEU LYS LYS LEU ILE ALA ALA GLN THR GLY SEQRES 4 S 76 THR ARG TRP ASN LYS ILE VAL LEU LYS LYS TRP TYR THR SEQRES 5 S 76 ILE PHE LYS ASP HIS VAL SER LEU GLY ASP TYR GLU ILE SEQRES 6 S 76 HIS ASP GLY MET ASN LEU GLU LEU TYR TYR GLN SEQRES 1 T 19 SER LEU SER ILE GLU GLU THR ASN LYS LEU ARG ALA LYS SEQRES 2 T 19 LEU GLY LEU LYS PRO LEU FORMUL 13 HOH *287(H2 O) HELIX 1 1 THR A 23 THR A 35 1 13 HELIX 2 2 ARG A 38 ASN A 40 5 3 HELIX 3 3 THR B 23 THR B 35 1 13 HELIX 4 4 ARG B 38 ASN B 40 5 3 HELIX 5 5 SER C 2 LEU C 13 1 12 HELIX 6 6 SER D 2 LEU D 13 1 12 HELIX 7 7 THR G 23 GLY G 36 1 14 HELIX 8 8 ARG G 38 ASN G 40 5 3 HELIX 9 9 LEU G 57 GLU G 61 5 5 HELIX 10 10 SER H 2 LEU H 13 1 12 HELIX 11 11 THR K 23 THR K 35 1 13 HELIX 12 12 LEU K 57 GLU K 61 5 5 HELIX 13 13 SER L 2 LEU L 13 1 12 HELIX 14 14 THR O 23 GLY O 36 1 14 HELIX 15 15 ARG O 38 ASN O 40 5 3 HELIX 16 16 LEU O 57 GLU O 61 5 5 HELIX 17 17 SER P 2 GLY P 14 1 13 HELIX 18 18 THR S 23 GLY S 36 1 14 HELIX 19 19 ARG S 38 ASN S 40 5 3 HELIX 20 20 LEU S 57 GLU S 61 5 5 HELIX 21 21 SER T 2 GLY T 14 1 13 SHEET 1 A 5 LYS A 13 ASN A 19 0 SHEET 2 A 5 MET A 1 ASN A 7 -1 N ILE A 2 O CYS A 18 SHEET 3 A 5 ASN A 67 TYR A 72 1 O LEU A 68 N VAL A 5 SHEET 4 A 5 ILE A 42 LYS A 46 -1 N VAL A 43 O TYR A 71 SHEET 5 A 5 THR A 49 ILE A 50 -1 O THR A 49 N LYS A 46 SHEET 1 B 5 LYS B 13 ASN B 19 0 SHEET 2 B 5 MET B 1 ASN B 7 -1 N VAL B 4 O VAL B 16 SHEET 3 B 5 ASN B 67 TYR B 72 1 O LEU B 68 N VAL B 5 SHEET 4 B 5 ILE B 42 LYS B 46 -1 N LYS B 45 O GLU B 69 SHEET 5 B 5 THR B 49 ILE B 50 -1 O THR B 49 N LYS B 46 SHEET 1 C 5 LYS G 13 ASN G 19 0 SHEET 2 C 5 MET G 1 ASP G 8 -1 N ILE G 2 O CYS G 18 SHEET 3 C 5 ASN G 67 TYR G 72 1 O LEU G 68 N VAL G 5 SHEET 4 C 5 ILE G 42 LYS G 46 -1 N VAL G 43 O TYR G 71 SHEET 5 C 5 THR G 49 ILE G 50 -1 O THR G 49 N LYS G 46 SHEET 1 D 5 LYS K 13 ASN K 19 0 SHEET 2 D 5 MET K 1 ASP K 8 -1 N CYS K 6 O VAL K 14 SHEET 3 D 5 ASN K 67 TYR K 72 1 O LEU K 68 N VAL K 5 SHEET 4 D 5 ILE K 42 LYS K 46 -1 N VAL K 43 O TYR K 71 SHEET 5 D 5 THR K 49 ILE K 50 -1 O THR K 49 N LYS K 46 SHEET 1 E 5 LYS O 13 ASN O 19 0 SHEET 2 E 5 MET O 1 ASP O 8 -1 N ILE O 2 O CYS O 18 SHEET 3 E 5 ASN O 67 TYR O 72 1 O LEU O 70 N ASN O 7 SHEET 4 E 5 ILE O 42 LYS O 46 -1 N LYS O 45 O GLU O 69 SHEET 5 E 5 THR O 49 ILE O 50 -1 O THR O 49 N LYS O 46 SHEET 1 F 5 LYS S 13 ASN S 19 0 SHEET 2 F 5 MET S 1 ASP S 8 -1 N CYS S 6 O VAL S 14 SHEET 3 F 5 ASN S 67 TYR S 72 1 O LEU S 68 N VAL S 5 SHEET 4 F 5 ILE S 42 LYS S 46 -1 N VAL S 43 O TYR S 71 SHEET 5 F 5 THR S 49 ILE S 50 -1 O THR S 49 N LYS S 46 CISPEP 1 GLY A -2 SER A -1 0 -12.88 CRYST1 87.510 103.630 67.000 90.00 90.00 90.00 P 21 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011427 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009650 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014925 0.00000