HEADER OXIDOREDUCTASE 29-MAR-14 4PZC TITLE CRYSTAL STRUCTURE OF (S)-3-HYDROXYBUTYRYL-COA DEHYDROGENASE PAAH1 FROM TITLE 2 RALSTONIA EUTROPHA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-HYDROXYACYL-COA DEHYDROGENASE; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 1.1.1.35; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RALSTONIA EUTROPHA H16; SOURCE 3 ORGANISM_TAXID: 381666; SOURCE 4 STRAIN: ATCC 17699 / H16 / DSM 428 / STANIER 337; SOURCE 5 GENE: PAAH1, H16_A0282; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ROSSMANN FOLD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.KIM,J.H.CHANG,K.J.KIM REVDAT 3 20-MAR-24 4PZC 1 REMARK REVDAT 2 18-FEB-15 4PZC 1 REVDAT 1 11-FEB-15 4PZC 0 JRNL AUTH J.KIM,J.H.CHANG,K.J.KIM JRNL TITL CRYSTAL STRUCTURE AND BIOCHEMICAL PROPERTIES OF THE JRNL TITL 2 (S)-3-HYDROXYBUTYRYL-COA DEHYDROGENASE PAAH1 FROM RALSTONIA JRNL TITL 3 EUTROPHA JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 448 163 2014 JRNL REFN ISSN 0006-291X JRNL PMID 24792376 JRNL DOI 10.1016/J.BBRC.2014.04.101 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 29327 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1564 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2102 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.3250 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6306 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 78 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.22000 REMARK 3 B22 (A**2) : 2.22000 REMARK 3 B33 (A**2) : -7.20000 REMARK 3 B12 (A**2) : 1.11000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.733 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.339 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.295 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.658 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6384 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6441 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8637 ; 1.576 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14829 ; 0.816 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 846 ; 7.201 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 219 ;42.068 ;24.658 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1155 ;18.615 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;19.113 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1056 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7119 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1260 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3393 ; 3.944 ; 5.929 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3392 ; 3.945 ; 5.929 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4236 ; 6.125 ; 8.872 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4237 ; 6.124 ; 8.873 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2991 ; 3.680 ; 6.257 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2992 ; 3.679 ; 6.258 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4402 ; 5.815 ; 9.231 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7686 ; 9.304 ;47.043 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7685 ; 9.304 ;47.052 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4PZC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085408. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30900 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M (NH4)2SO4, 0.1M CACODYLATE PH 6.5, REMARK 280 0.2M SODIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.77733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.38867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.38867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 64.77733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -64.77733 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 336 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 253 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 253 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 47 -72.62 -55.05 REMARK 500 GLU A 57 19.63 58.75 REMARK 500 LYS A 64 -86.54 -59.07 REMARK 500 ALA A 65 -45.94 -23.68 REMARK 500 ALA A 89 37.62 -149.53 REMARK 500 ALA A 127 -45.18 -29.27 REMARK 500 ALA A 149 45.84 -99.44 REMARK 500 PHE A 187 -126.95 49.78 REMARK 500 ARG A 257 123.54 -30.54 REMARK 500 SER A 283 -72.99 -38.90 REMARK 500 ALA B 11 13.58 -147.53 REMARK 500 THR B 13 -38.45 -30.78 REMARK 500 MET B 14 -74.39 -81.98 REMARK 500 GLU B 57 0.30 91.84 REMARK 500 THR B 75 14.53 -150.66 REMARK 500 LYS B 81 1.69 -59.54 REMARK 500 ALA B 89 10.47 -156.57 REMARK 500 ALA B 90 -83.03 -62.62 REMARK 500 THR B 118 146.59 171.41 REMARK 500 SER B 120 35.84 -157.37 REMARK 500 HIS B 140 91.61 -165.67 REMARK 500 THR B 159 107.97 -44.90 REMARK 500 SER B 184 138.74 -178.14 REMARK 500 PHE B 187 -120.49 37.88 REMARK 500 TYR B 270 84.53 -68.01 REMARK 500 ARG B 277 123.72 -171.15 REMARK 500 ALA C 82 40.90 -88.67 REMARK 500 ALA C 89 53.73 -143.92 REMARK 500 SER C 120 -13.82 -175.05 REMARK 500 ARG C 132 35.30 -153.46 REMARK 500 ASN C 143 113.21 -19.40 REMARK 500 PHE C 187 -128.50 52.09 REMARK 500 ALA C 209 149.73 -179.57 REMARK 500 PRO C 254 -8.48 -59.87 REMARK 500 LYS C 274 -25.79 -31.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 142 ASN A 143 -143.29 REMARK 500 ASN C 143 PRO C 144 -31.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PZE RELATED DB: PDB REMARK 900 RELATED ID: 4PZD RELATED DB: PDB DBREF 4PZC A 1 284 UNP Q0KEY8 Q0KEY8_CUPNH 1 284 DBREF 4PZC B 1 284 UNP Q0KEY8 Q0KEY8_CUPNH 1 284 DBREF 4PZC C 1 284 UNP Q0KEY8 Q0KEY8_CUPNH 1 284 SEQRES 1 A 284 MET SER ILE ARG THR VAL GLY ILE VAL GLY ALA GLY THR SEQRES 2 A 284 MET GLY ASN GLY ILE ALA GLN ALA CYS ALA VAL VAL GLY SEQRES 3 A 284 LEU ASN VAL VAL MET VAL ASP ILE SER ASP ALA ALA VAL SEQRES 4 A 284 GLN LYS GLY VAL ALA THR VAL ALA SER SER LEU ASP ARG SEQRES 5 A 284 LEU ILE LYS LYS GLU LYS LEU THR GLU ALA ASP LYS ALA SEQRES 6 A 284 SER ALA LEU ALA ARG ILE LYS GLY SER THR SER TYR ASP SEQRES 7 A 284 ASP LEU LYS ALA THR ASP ILE VAL ILE GLU ALA ALA THR SEQRES 8 A 284 GLU ASN TYR ASP LEU LYS VAL LYS ILE LEU LYS GLN ILE SEQRES 9 A 284 ASP GLY ILE VAL GLY GLU ASN VAL ILE ILE ALA SER ASN SEQRES 10 A 284 THR SER SER ILE SER ILE THR LYS LEU ALA ALA VAL THR SEQRES 11 A 284 SER ARG ALA ASP ARG PHE ILE GLY MET HIS PHE PHE ASN SEQRES 12 A 284 PRO VAL PRO VAL MET ALA LEU VAL GLU LEU ILE ARG GLY SEQRES 13 A 284 LEU GLN THR SER ASP THR THR HIS ALA ALA VAL GLU ALA SEQRES 14 A 284 LEU SER LYS GLN LEU GLY LYS TYR PRO ILE THR VAL LYS SEQRES 15 A 284 ASN SER PRO GLY PHE VAL VAL ASN ARG ILE LEU CYS PRO SEQRES 16 A 284 MET ILE ASN GLU ALA PHE CYS VAL LEU GLY GLU GLY LEU SEQRES 17 A 284 ALA SER PRO GLU GLU ILE ASP GLU GLY MET LYS LEU GLY SEQRES 18 A 284 CYS ASN HIS PRO ILE GLY PRO LEU ALA LEU ALA ASP MET SEQRES 19 A 284 ILE GLY LEU ASP THR MET LEU ALA VAL MET GLU VAL LEU SEQRES 20 A 284 TYR THR GLU PHE ALA ASP PRO LYS TYR ARG PRO ALA MET SEQRES 21 A 284 LEU MET ARG GLU MET VAL ALA ALA GLY TYR LEU GLY ARG SEQRES 22 A 284 LYS THR GLY ARG GLY VAL TYR VAL TYR SER LYS SEQRES 1 B 284 MET SER ILE ARG THR VAL GLY ILE VAL GLY ALA GLY THR SEQRES 2 B 284 MET GLY ASN GLY ILE ALA GLN ALA CYS ALA VAL VAL GLY SEQRES 3 B 284 LEU ASN VAL VAL MET VAL ASP ILE SER ASP ALA ALA VAL SEQRES 4 B 284 GLN LYS GLY VAL ALA THR VAL ALA SER SER LEU ASP ARG SEQRES 5 B 284 LEU ILE LYS LYS GLU LYS LEU THR GLU ALA ASP LYS ALA SEQRES 6 B 284 SER ALA LEU ALA ARG ILE LYS GLY SER THR SER TYR ASP SEQRES 7 B 284 ASP LEU LYS ALA THR ASP ILE VAL ILE GLU ALA ALA THR SEQRES 8 B 284 GLU ASN TYR ASP LEU LYS VAL LYS ILE LEU LYS GLN ILE SEQRES 9 B 284 ASP GLY ILE VAL GLY GLU ASN VAL ILE ILE ALA SER ASN SEQRES 10 B 284 THR SER SER ILE SER ILE THR LYS LEU ALA ALA VAL THR SEQRES 11 B 284 SER ARG ALA ASP ARG PHE ILE GLY MET HIS PHE PHE ASN SEQRES 12 B 284 PRO VAL PRO VAL MET ALA LEU VAL GLU LEU ILE ARG GLY SEQRES 13 B 284 LEU GLN THR SER ASP THR THR HIS ALA ALA VAL GLU ALA SEQRES 14 B 284 LEU SER LYS GLN LEU GLY LYS TYR PRO ILE THR VAL LYS SEQRES 15 B 284 ASN SER PRO GLY PHE VAL VAL ASN ARG ILE LEU CYS PRO SEQRES 16 B 284 MET ILE ASN GLU ALA PHE CYS VAL LEU GLY GLU GLY LEU SEQRES 17 B 284 ALA SER PRO GLU GLU ILE ASP GLU GLY MET LYS LEU GLY SEQRES 18 B 284 CYS ASN HIS PRO ILE GLY PRO LEU ALA LEU ALA ASP MET SEQRES 19 B 284 ILE GLY LEU ASP THR MET LEU ALA VAL MET GLU VAL LEU SEQRES 20 B 284 TYR THR GLU PHE ALA ASP PRO LYS TYR ARG PRO ALA MET SEQRES 21 B 284 LEU MET ARG GLU MET VAL ALA ALA GLY TYR LEU GLY ARG SEQRES 22 B 284 LYS THR GLY ARG GLY VAL TYR VAL TYR SER LYS SEQRES 1 C 284 MET SER ILE ARG THR VAL GLY ILE VAL GLY ALA GLY THR SEQRES 2 C 284 MET GLY ASN GLY ILE ALA GLN ALA CYS ALA VAL VAL GLY SEQRES 3 C 284 LEU ASN VAL VAL MET VAL ASP ILE SER ASP ALA ALA VAL SEQRES 4 C 284 GLN LYS GLY VAL ALA THR VAL ALA SER SER LEU ASP ARG SEQRES 5 C 284 LEU ILE LYS LYS GLU LYS LEU THR GLU ALA ASP LYS ALA SEQRES 6 C 284 SER ALA LEU ALA ARG ILE LYS GLY SER THR SER TYR ASP SEQRES 7 C 284 ASP LEU LYS ALA THR ASP ILE VAL ILE GLU ALA ALA THR SEQRES 8 C 284 GLU ASN TYR ASP LEU LYS VAL LYS ILE LEU LYS GLN ILE SEQRES 9 C 284 ASP GLY ILE VAL GLY GLU ASN VAL ILE ILE ALA SER ASN SEQRES 10 C 284 THR SER SER ILE SER ILE THR LYS LEU ALA ALA VAL THR SEQRES 11 C 284 SER ARG ALA ASP ARG PHE ILE GLY MET HIS PHE PHE ASN SEQRES 12 C 284 PRO VAL PRO VAL MET ALA LEU VAL GLU LEU ILE ARG GLY SEQRES 13 C 284 LEU GLN THR SER ASP THR THR HIS ALA ALA VAL GLU ALA SEQRES 14 C 284 LEU SER LYS GLN LEU GLY LYS TYR PRO ILE THR VAL LYS SEQRES 15 C 284 ASN SER PRO GLY PHE VAL VAL ASN ARG ILE LEU CYS PRO SEQRES 16 C 284 MET ILE ASN GLU ALA PHE CYS VAL LEU GLY GLU GLY LEU SEQRES 17 C 284 ALA SER PRO GLU GLU ILE ASP GLU GLY MET LYS LEU GLY SEQRES 18 C 284 CYS ASN HIS PRO ILE GLY PRO LEU ALA LEU ALA ASP MET SEQRES 19 C 284 ILE GLY LEU ASP THR MET LEU ALA VAL MET GLU VAL LEU SEQRES 20 C 284 TYR THR GLU PHE ALA ASP PRO LYS TYR ARG PRO ALA MET SEQRES 21 C 284 LEU MET ARG GLU MET VAL ALA ALA GLY TYR LEU GLY ARG SEQRES 22 C 284 LYS THR GLY ARG GLY VAL TYR VAL TYR SER LYS FORMUL 4 HOH *78(H2 O) HELIX 1 1 GLY A 12 VAL A 24 1 13 HELIX 2 2 SER A 35 LYS A 55 1 21 HELIX 3 3 THR A 60 ARG A 70 1 11 HELIX 4 4 SER A 76 THR A 83 5 8 HELIX 5 5 ASN A 93 VAL A 108 1 16 HELIX 6 6 SER A 122 ALA A 128 1 7 HELIX 7 7 ARG A 132 ASP A 134 5 3 HELIX 8 8 SER A 160 LEU A 174 1 15 HELIX 9 9 VAL A 188 GLU A 206 1 19 HELIX 10 10 SER A 210 ASN A 223 1 14 HELIX 11 11 GLY A 227 GLY A 236 1 10 HELIX 12 12 GLY A 236 ALA A 252 1 17 HELIX 13 13 ASP A 253 ARG A 257 5 5 HELIX 14 14 ALA A 259 GLY A 269 1 11 HELIX 15 15 GLY A 272 GLY A 276 5 5 HELIX 16 16 GLY B 12 VAL B 25 1 14 HELIX 17 17 ASP B 36 LYS B 56 1 21 HELIX 18 18 THR B 60 ILE B 71 1 12 HELIX 19 19 SER B 76 LYS B 81 5 6 HELIX 20 20 ASN B 93 VAL B 108 1 16 HELIX 21 21 SER B 122 ALA B 128 1 7 HELIX 22 22 ARG B 132 PHE B 136 5 5 HELIX 23 23 SER B 160 LEU B 174 1 15 HELIX 24 24 VAL B 188 GLU B 206 1 19 HELIX 25 25 SER B 210 ASN B 223 1 14 HELIX 26 26 GLY B 227 GLY B 236 1 10 HELIX 27 27 GLY B 236 ALA B 252 1 17 HELIX 28 28 ASP B 253 ARG B 257 5 5 HELIX 29 29 ALA B 259 ALA B 268 1 10 HELIX 30 30 GLY B 272 GLY B 276 5 5 HELIX 31 31 GLY C 12 VAL C 25 1 14 HELIX 32 32 SER C 35 LYS C 56 1 22 HELIX 33 33 THR C 60 ARG C 70 1 11 HELIX 34 34 ASP C 78 THR C 83 5 6 HELIX 35 35 ASN C 93 VAL C 108 1 16 HELIX 36 36 SER C 122 VAL C 129 1 8 HELIX 37 37 ARG C 132 ASP C 134 5 3 HELIX 38 38 SER C 160 LEU C 174 1 15 HELIX 39 39 VAL C 188 GLU C 206 1 19 HELIX 40 40 SER C 210 ASN C 223 1 14 HELIX 41 41 GLY C 227 GLY C 236 1 10 HELIX 42 42 GLY C 236 ALA C 252 1 17 HELIX 43 43 ASP C 253 ARG C 257 5 5 HELIX 44 44 ALA C 259 ALA C 268 1 10 HELIX 45 45 GLY C 272 GLY C 276 5 5 SHEET 1 A 8 ILE A 71 LYS A 72 0 SHEET 2 A 8 ASN A 28 VAL A 32 1 N VAL A 29 O LYS A 72 SHEET 3 A 8 THR A 5 VAL A 9 1 N VAL A 6 O ASN A 28 SHEET 4 A 8 ILE A 85 GLU A 88 1 O ILE A 85 N GLY A 7 SHEET 5 A 8 ILE A 113 ASN A 117 1 O ALA A 115 N VAL A 86 SHEET 6 A 8 PHE A 136 PHE A 141 1 O MET A 139 N SER A 116 SHEET 7 A 8 LEU A 150 ARG A 155 -1 O ILE A 154 N GLY A 138 SHEET 8 A 8 TYR A 177 LYS A 182 1 O ILE A 179 N LEU A 153 SHEET 1 B 3 VAL B 6 GLY B 7 0 SHEET 2 B 3 ILE B 85 GLU B 88 1 O ILE B 85 N GLY B 7 SHEET 3 B 3 ILE B 113 SER B 116 1 O ALA B 115 N VAL B 86 SHEET 1 C 2 LEU B 150 ARG B 155 0 SHEET 2 C 2 TYR B 177 LYS B 182 1 O ILE B 179 N LEU B 153 SHEET 1 D 8 ILE C 71 SER C 74 0 SHEET 2 D 8 ASN C 28 VAL C 32 1 N MET C 31 O LYS C 72 SHEET 3 D 8 THR C 5 VAL C 9 1 N ILE C 8 O VAL C 30 SHEET 4 D 8 ILE C 85 GLU C 88 1 O ILE C 85 N GLY C 7 SHEET 5 D 8 ILE C 113 SER C 116 1 O ILE C 113 N VAL C 86 SHEET 6 D 8 PHE C 136 HIS C 140 1 O MET C 139 N SER C 116 SHEET 7 D 8 LEU C 150 ARG C 155 -1 O GLU C 152 N HIS C 140 SHEET 8 D 8 TYR C 177 LYS C 182 1 O VAL C 181 N LEU C 153 CISPEP 1 LEU A 59 THR A 60 0 -18.15 CISPEP 2 ASN B 143 PRO B 144 0 -2.73 CISPEP 3 SER B 283 LYS B 284 0 6.27 CRYST1 135.427 135.427 97.166 90.00 90.00 120.00 P 32 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007384 0.004263 0.000000 0.00000 SCALE2 0.000000 0.008526 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010292 0.00000