HEADER PROTEIN TRANSPORT 30-MAR-14 4PZG
TITLE CRYSTAL STRUCTURE OF HUMAN SORTING NEXIN 10 (SNX10)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: SORTING NEXIN-10;
COMPND 3 CHAIN: A, B;
COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: SNX10;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS SORTING NEXIN, PROTEIN TRANSPORT, PHOX-HOMOLOGY DOMAIN
EXPDTA X-RAY DIFFRACTION
AUTHOR T.XU,J.XU,Q.WANG,J.LIU
REVDAT 3 20-NOV-24 4PZG 1 REMARK SEQADV HETSYN
REVDAT 2 03-DEC-14 4PZG 1 JRNL
REVDAT 1 24-SEP-14 4PZG 0
JRNL AUTH T.XU,J.XU,Y.YE,Q.WANG,X.SHU,D.PEI,J.LIU
JRNL TITL STRUCTURE OF HUMAN SNX10 REVEALS INSIGHTS INTO ITS ROLE IN
JRNL TITL 2 HUMAN AUTOSOMAL RECESSIVE OSTEOPETROSIS.
JRNL REF PROTEINS V. 82 3483 2014
JRNL REFN ISSN 0887-3585
JRNL PMID 25212774
JRNL DOI 10.1002/PROT.24689
REMARK 2
REMARK 2 RESOLUTION. 2.80 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.7.0029
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.45
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7
REMARK 3 NUMBER OF REFLECTIONS : 25133
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.197
REMARK 3 R VALUE (WORKING SET) : 0.194
REMARK 3 FREE R VALUE : 0.237
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100
REMARK 3 FREE R VALUE TEST SET COUNT : 1277
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87
REMARK 3 REFLECTION IN BIN (WORKING SET) : 1612
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.50
REMARK 3 BIN R VALUE (WORKING SET) : 0.3400
REMARK 3 BIN FREE R VALUE SET COUNT : 102
REMARK 3 BIN FREE R VALUE : 0.3700
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2558
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 87
REMARK 3 SOLVENT ATOMS : 15
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.05
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 1.14000
REMARK 3 B22 (A**2) : 1.14000
REMARK 3 B33 (A**2) : -3.69000
REMARK 3 B12 (A**2) : 1.14000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.250
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.227
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.622
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.894
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2687 ; 0.019 ; 0.019
REMARK 3 BOND LENGTHS OTHERS (A): 2531 ; 0.006 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3592 ; 1.970 ; 1.950
REMARK 3 BOND ANGLES OTHERS (DEGREES): 5778 ; 1.255 ; 3.001
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 300 ; 7.387 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;37.470 ;23.200
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 480 ;19.942 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;21.886 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 374 ; 0.102 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3008 ; 0.010 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 696 ; 0.005 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NCS TYPE: LOCAL
REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1
REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT
REMARK 3 1 A 8 156 B 8 156 8806 0.150 0.050
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY
REMARK 4
REMARK 4 4PZG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-14.
REMARK 100 THE DEPOSITION ID IS D_1000085412.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 13-MAR-14
REMARK 200 TEMPERATURE (KELVIN) : NULL
REMARK 200 PH : 7.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SSRF
REMARK 200 BEAMLINE : BL17U
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL
REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.29
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25144
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800
REMARK 200 RESOLUTION RANGE LOW (A) : 49.450
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7
REMARK 200 DATA REDUNDANCY : 6.500
REMARK 200 R MERGE (I) : 0.13600
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.5000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95
REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6
REMARK 200 DATA REDUNDANCY IN SHELL : 3.80
REMARK 200 R MERGE FOR SHELL (I) : 0.67400
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: NULL
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 76.53
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.24
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 4 M SODIUM NITRATE, 0.1 M BIS-TRIS
REMARK 280 PROPANE PH 7.0, VAPOR DIFFUSION, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+2/3
REMARK 290 3555 -X+Y,-X,Z+1/3
REMARK 290 4555 Y,X,-Z
REMARK 290 5555 X-Y,-Y,-Z+1/3
REMARK 290 6555 -X,-X+Y,-Z+2/3
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.22000
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 14.11000
REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 14.11000
REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.22000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 4370 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 17930 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 N NO3 A 302 LIES ON A SPECIAL POSITION.
REMARK 375 O2 NO3 A 302 LIES ON A SPECIAL POSITION.
REMARK 375 N NO3 A 305 LIES ON A SPECIAL POSITION.
REMARK 375 O2 NO3 A 305 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 PHE A 2
REMARK 465 PRO A 3
REMARK 465 GLU A 4
REMARK 465 GLN A 5
REMARK 465 GLN A 6
REMARK 465 LYS A 7
REMARK 465 ASP A 160
REMARK 465 GLU A 161
REMARK 465 GLU A 162
REMARK 465 GLY A 163
REMARK 465 LYS A 164
REMARK 465 LYS A 165
REMARK 465 GLU A 166
REMARK 465 ASN A 167
REMARK 465 ASP A 168
REMARK 465 ILE A 169
REMARK 465 ASP A 170
REMARK 465 TYR A 171
REMARK 465 ASP A 172
REMARK 465 SER A 173
REMARK 465 GLU A 174
REMARK 465 SER A 175
REMARK 465 SER A 176
REMARK 465 SER A 177
REMARK 465 SER A 178
REMARK 465 GLY A 179
REMARK 465 LEU A 180
REMARK 465 GLY A 181
REMARK 465 HIS A 182
REMARK 465 SER A 183
REMARK 465 SER A 184
REMARK 465 ASP A 185
REMARK 465 ASP A 186
REMARK 465 SER A 187
REMARK 465 SER A 188
REMARK 465 SER A 189
REMARK 465 HIS A 190
REMARK 465 GLY A 191
REMARK 465 CYS A 192
REMARK 465 LYS A 193
REMARK 465 VAL A 194
REMARK 465 ASN A 195
REMARK 465 THR A 196
REMARK 465 ALA A 197
REMARK 465 PRO A 198
REMARK 465 GLN A 199
REMARK 465 GLU A 200
REMARK 465 SER A 201
REMARK 465 LEU A 202
REMARK 465 GLU A 203
REMARK 465 HIS A 204
REMARK 465 HIS A 205
REMARK 465 HIS A 206
REMARK 465 HIS A 207
REMARK 465 HIS A 208
REMARK 465 HIS A 209
REMARK 465 MET B 1
REMARK 465 PHE B 2
REMARK 465 PRO B 3
REMARK 465 GLU B 4
REMARK 465 GLN B 5
REMARK 465 GLN B 6
REMARK 465 LYS B 7
REMARK 465 GLU B 158
REMARK 465 GLU B 159
REMARK 465 ASP B 160
REMARK 465 GLU B 161
REMARK 465 GLU B 162
REMARK 465 GLY B 163
REMARK 465 LYS B 164
REMARK 465 LYS B 165
REMARK 465 GLU B 166
REMARK 465 ASN B 167
REMARK 465 ASP B 168
REMARK 465 ILE B 169
REMARK 465 ASP B 170
REMARK 465 TYR B 171
REMARK 465 ASP B 172
REMARK 465 SER B 173
REMARK 465 GLU B 174
REMARK 465 SER B 175
REMARK 465 SER B 176
REMARK 465 SER B 177
REMARK 465 SER B 178
REMARK 465 GLY B 179
REMARK 465 LEU B 180
REMARK 465 GLY B 181
REMARK 465 HIS B 182
REMARK 465 SER B 183
REMARK 465 SER B 184
REMARK 465 ASP B 185
REMARK 465 ASP B 186
REMARK 465 SER B 187
REMARK 465 SER B 188
REMARK 465 SER B 189
REMARK 465 HIS B 190
REMARK 465 GLY B 191
REMARK 465 CYS B 192
REMARK 465 LYS B 193
REMARK 465 VAL B 194
REMARK 465 ASN B 195
REMARK 465 THR B 196
REMARK 465 ALA B 197
REMARK 465 PRO B 198
REMARK 465 GLN B 199
REMARK 465 GLU B 200
REMARK 465 SER B 201
REMARK 465 LEU B 202
REMARK 465 GLU B 203
REMARK 465 HIS B 204
REMARK 465 HIS B 205
REMARK 465 HIS B 206
REMARK 465 HIS B 207
REMARK 465 HIS B 208
REMARK 465 HIS B 209
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 N LYS B 79 O2 NO3 B 302 2.05
REMARK 500 NH1 ARG B 53 O1 NO3 B 304 2.06
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 TRP A 59 CB TRP A 59 CG -0.125
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ARG A 52 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES
REMARK 500 LEU A 69 CA - CB - CG ANGL. DEV. = 15.1 DEGREES
REMARK 500 ARG A 103 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES
REMARK 500 ARG B 94 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES
REMARK 500 ARG B 94 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 HIS A 27 23.55 90.85
REMARK 500 PRO A 77 -177.30 -69.06
REMARK 500 MET A 85 -9.34 -59.82
REMARK 500 GLU A 158 -91.77 90.02
REMARK 500 ASP B 24 -41.67 -18.17
REMARK 500 PHE B 25 -137.71 -86.97
REMARK 500 TRP B 26 32.50 -92.50
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS
REMARK 500
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH
REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED
REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.
REMARK 500 MODEL OMEGA
REMARK 500 ASP B 24 PHE B 25 -147.50
REMARK 500
REMARK 500 REMARK: NULL
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 PE5 A 306
REMARK 610 PE5 A 307
REMARK 610 PE5 A 308
REMARK 610 PE5 A 309
REMARK 610 PE5 A 310
REMARK 610 PE5 B 307
REMARK 610 PE5 B 308
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 302
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 303
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 304
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 305
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE5 A 306
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE5 A 307
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE5 A 308
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE5 A 309
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE5 A 310
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 302
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 303
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 304
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 305
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 306
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE5 B 307
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE5 B 308
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4ON3 RELATED DB: PDB
DBREF 4PZG A 1 201 UNP Q9Y5X0 SNX10_HUMAN 1 201
DBREF 4PZG B 1 201 UNP Q9Y5X0 SNX10_HUMAN 1 201
SEQADV 4PZG LEU A 202 UNP Q9Y5X0 EXPRESSION TAG
SEQADV 4PZG GLU A 203 UNP Q9Y5X0 EXPRESSION TAG
SEQADV 4PZG HIS A 204 UNP Q9Y5X0 EXPRESSION TAG
SEQADV 4PZG HIS A 205 UNP Q9Y5X0 EXPRESSION TAG
SEQADV 4PZG HIS A 206 UNP Q9Y5X0 EXPRESSION TAG
SEQADV 4PZG HIS A 207 UNP Q9Y5X0 EXPRESSION TAG
SEQADV 4PZG HIS A 208 UNP Q9Y5X0 EXPRESSION TAG
SEQADV 4PZG HIS A 209 UNP Q9Y5X0 EXPRESSION TAG
SEQADV 4PZG LEU B 202 UNP Q9Y5X0 EXPRESSION TAG
SEQADV 4PZG GLU B 203 UNP Q9Y5X0 EXPRESSION TAG
SEQADV 4PZG HIS B 204 UNP Q9Y5X0 EXPRESSION TAG
SEQADV 4PZG HIS B 205 UNP Q9Y5X0 EXPRESSION TAG
SEQADV 4PZG HIS B 206 UNP Q9Y5X0 EXPRESSION TAG
SEQADV 4PZG HIS B 207 UNP Q9Y5X0 EXPRESSION TAG
SEQADV 4PZG HIS B 208 UNP Q9Y5X0 EXPRESSION TAG
SEQADV 4PZG HIS B 209 UNP Q9Y5X0 EXPRESSION TAG
SEQRES 1 A 209 MET PHE PRO GLU GLN GLN LYS GLU GLU PHE VAL SER VAL
SEQRES 2 A 209 TRP VAL ARG ASP PRO ARG ILE GLN LYS GLU ASP PHE TRP
SEQRES 3 A 209 HIS SER TYR ILE ASP TYR GLU ILE CYS ILE HIS THR ASN
SEQRES 4 A 209 SER MET CYS PHE THR MET LYS THR SER CYS VAL ARG ARG
SEQRES 5 A 209 ARG TYR ARG GLU PHE VAL TRP LEU ARG GLN ARG LEU GLN
SEQRES 6 A 209 SER ASN ALA LEU LEU VAL GLN LEU PRO GLU LEU PRO SER
SEQRES 7 A 209 LYS ASN LEU PHE PHE ASN MET ASN ASN ARG GLN HIS VAL
SEQRES 8 A 209 ASP GLN ARG ARG GLN GLY LEU GLU ASP PHE LEU ARG LYS
SEQRES 9 A 209 VAL LEU GLN ASN ALA LEU LEU LEU SER ASP SER SER LEU
SEQRES 10 A 209 HIS LEU PHE LEU GLN SER HIS LEU ASN SER GLU ASP ILE
SEQRES 11 A 209 GLU ALA CYS VAL SER GLY GLN THR LYS TYR SER VAL GLU
SEQRES 12 A 209 GLU ALA ILE HIS LYS PHE ALA LEU MET ASN ARG ARG PHE
SEQRES 13 A 209 PRO GLU GLU ASP GLU GLU GLY LYS LYS GLU ASN ASP ILE
SEQRES 14 A 209 ASP TYR ASP SER GLU SER SER SER SER GLY LEU GLY HIS
SEQRES 15 A 209 SER SER ASP ASP SER SER SER HIS GLY CYS LYS VAL ASN
SEQRES 16 A 209 THR ALA PRO GLN GLU SER LEU GLU HIS HIS HIS HIS HIS
SEQRES 17 A 209 HIS
SEQRES 1 B 209 MET PHE PRO GLU GLN GLN LYS GLU GLU PHE VAL SER VAL
SEQRES 2 B 209 TRP VAL ARG ASP PRO ARG ILE GLN LYS GLU ASP PHE TRP
SEQRES 3 B 209 HIS SER TYR ILE ASP TYR GLU ILE CYS ILE HIS THR ASN
SEQRES 4 B 209 SER MET CYS PHE THR MET LYS THR SER CYS VAL ARG ARG
SEQRES 5 B 209 ARG TYR ARG GLU PHE VAL TRP LEU ARG GLN ARG LEU GLN
SEQRES 6 B 209 SER ASN ALA LEU LEU VAL GLN LEU PRO GLU LEU PRO SER
SEQRES 7 B 209 LYS ASN LEU PHE PHE ASN MET ASN ASN ARG GLN HIS VAL
SEQRES 8 B 209 ASP GLN ARG ARG GLN GLY LEU GLU ASP PHE LEU ARG LYS
SEQRES 9 B 209 VAL LEU GLN ASN ALA LEU LEU LEU SER ASP SER SER LEU
SEQRES 10 B 209 HIS LEU PHE LEU GLN SER HIS LEU ASN SER GLU ASP ILE
SEQRES 11 B 209 GLU ALA CYS VAL SER GLY GLN THR LYS TYR SER VAL GLU
SEQRES 12 B 209 GLU ALA ILE HIS LYS PHE ALA LEU MET ASN ARG ARG PHE
SEQRES 13 B 209 PRO GLU GLU ASP GLU GLU GLY LYS LYS GLU ASN ASP ILE
SEQRES 14 B 209 ASP TYR ASP SER GLU SER SER SER SER GLY LEU GLY HIS
SEQRES 15 B 209 SER SER ASP ASP SER SER SER HIS GLY CYS LYS VAL ASN
SEQRES 16 B 209 THR ALA PRO GLN GLU SER LEU GLU HIS HIS HIS HIS HIS
SEQRES 17 B 209 HIS
HET NO3 A 301 4
HET NO3 A 302 4
HET NO3 A 303 4
HET NO3 A 304 4
HET NO3 A 305 4
HET PE5 A 306 5
HET PE5 A 307 4
HET PE5 A 308 13
HET PE5 A 309 5
HET PE5 A 310 4
HET NO3 B 301 4
HET NO3 B 302 4
HET NO3 B 303 4
HET NO3 B 304 4
HET NO3 B 305 4
HET NO3 B 306 4
HET PE5 B 307 6
HET PE5 B 308 6
HETNAM NO3 NITRATE ION
HETNAM PE5 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL
HETSYN PE5 2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-
HETSYN 2 PE5 ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL; POLYETHYLENE
HETSYN 3 PE5 GLYCOL PEG400
FORMUL 3 NO3 11(N O3 1-)
FORMUL 8 PE5 7(C18 H38 O9)
FORMUL 21 HOH *15(H2 O)
HELIX 1 1 ARG A 53 ALA A 68 1 16
HELIX 2 2 LYS A 79 PHE A 83 5 5
HELIX 3 3 ASN A 87 GLN A 107 1 21
HELIX 4 4 ASN A 108 SER A 113 1 6
HELIX 5 5 ASP A 114 SER A 123 1 10
HELIX 6 6 ASN A 126 SER A 135 1 10
HELIX 7 7 SER A 141 ARG A 154 1 14
HELIX 8 8 TYR B 54 ALA B 68 1 15
HELIX 9 9 ASN B 87 GLN B 107 1 21
HELIX 10 10 ASN B 108 SER B 113 1 6
HELIX 11 11 ASP B 114 SER B 123 1 10
HELIX 12 12 ASN B 126 SER B 135 1 10
HELIX 13 13 SER B 141 ARG B 154 1 14
SHEET 1 A 3 VAL A 11 GLN A 21 0
SHEET 2 A 3 TYR A 29 THR A 38 -1 O GLU A 33 N ARG A 16
SHEET 3 A 3 THR A 47 ARG A 52 -1 O VAL A 50 N ILE A 34
SHEET 1 B 3 VAL B 11 GLU B 23 0
SHEET 2 B 3 HIS B 27 THR B 38 -1 O TYR B 29 N GLN B 21
SHEET 3 B 3 THR B 47 ARG B 53 -1 O VAL B 50 N ILE B 34
SSBOND 1 CYS A 35 CYS A 49 1555 1555 2.20
SSBOND 2 CYS B 35 CYS B 49 1555 1555 2.20
SITE 1 AC1 8 MET A 45 LYS A 46 THR A 47 ARG A 154
SITE 2 AC1 8 MET B 45 LYS B 46 THR B 47 ARG B 154
SITE 1 AC2 3 ASN A 84 ASN A 87 HIS A 90
SITE 1 AC3 5 ILE A 30 ARG A 53 TYR A 54 ARG A 55
SITE 2 AC3 5 ASN A 80
SITE 1 AC4 5 SER A 28 LYS A 79 ASN A 80 LEU A 81
SITE 2 AC4 5 PE5 A 308
SITE 1 AC5 2 ARG A 61 GLN A 65
SITE 1 AC6 7 THR A 47 SER A 48 CYS A 49 ASN A 153
SITE 2 AC6 7 ARG A 154 ARG B 154 PHE B 156
SITE 1 AC7 3 HIS A 27 ARG A 55 TRP A 59
SITE 1 AC8 5 SER A 28 ASN A 80 LEU A 81 PHE A 83
SITE 2 AC8 5 NO3 A 304
SITE 1 AC9 4 GLU A 75 LEU A 76 SER A 78 PE5 A 310
SITE 1 BC1 4 TRP A 26 ARG A 61 LEU A 76 PE5 A 309
SITE 1 BC2 7 TYR B 54 ARG B 55 ASN B 80 THR B 138
SITE 2 BC2 7 LYS B 139 TYR B 140 NO3 B 304
SITE 1 BC3 6 TYR B 54 PRO B 77 SER B 78 LYS B 79
SITE 2 BC3 6 ASN B 80 ARG B 94
SITE 1 BC4 6 TYR B 29 ILE B 30 PHE B 83 MET B 85
SITE 2 BC4 6 ARG B 94 NO3 B 304
SITE 1 BC5 5 ARG B 53 TYR B 54 ARG B 55 NO3 B 301
SITE 2 BC5 5 NO3 B 303
SITE 1 BC6 6 ALA B 68 LEU B 69 LEU B 70 ASN B 86
SITE 2 BC6 6 ASN B 87 ARG B 88
SITE 1 BC7 4 LEU B 81 PHE B 82 HIS B 124 MET B 152
SITE 1 BC8 4 ARG B 61 GLU B 75 LEU B 76 LYS B 139
SITE 1 BC9 4 ASN A 39 GLU B 143 HIS B 147 LYS B 148
CRYST1 205.859 205.859 42.330 90.00 90.00 120.00 P 32 2 1 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.004858 0.002805 0.000000 0.00000
SCALE2 0.000000 0.005609 0.000000 0.00000
SCALE3 0.000000 0.000000 0.023624 0.00000