HEADER DNA BINDING PROTEIN 31-MAR-14 4Q04 TITLE CRYSTAL STRUCTURE OF URE3-BP FROM ENTOMAEBA HISTOLYTICA WITHOUT TITLE 2 CALCIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: URE3-BP SEQUENCE SPECIFIC DNA BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTAMOEBA HISTOLYTICA; SOURCE 3 ORGANISM_TAXID: 5759; SOURCE 4 GENE: URE3-BP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PBADSMT KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, SSGCID, DNA BINDING PROTEIN, SEQUENCE SPECIFIC, KEYWDS 4 CALCIUM DEPENDENT INHIBITION, TRANSCRIPTION FACTOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 20-SEP-23 4Q04 1 REMARK LINK REVDAT 1 23-APR-14 4Q04 0 JRNL AUTH T.E.EDWARDS,J.ABENDROTH, JRNL AUTH 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL TITL CRYSTAL STRUCTURE OF URE3-BP FROM ENTOMAEBA HISTOLYTICA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 3 NUMBER OF REFLECTIONS : 33961 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1720 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2275 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3449 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 285 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.47000 REMARK 3 B22 (A**2) : -0.47000 REMARK 3 B33 (A**2) : 0.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.170 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.163 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.247 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3603 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3327 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4897 ; 1.649 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7623 ; 0.869 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 436 ; 5.530 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 169 ;33.022 ;23.254 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 584 ;13.898 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;21.251 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 510 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4092 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 921 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1714 ; 1.075 ; 1.391 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1713 ; 1.075 ; 1.390 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2142 ; 1.680 ; 2.080 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 220 REMARK 3 ORIGIN FOR THE GROUP (A): 17.1471 3.8711 65.5373 REMARK 3 T TENSOR REMARK 3 T11: 0.0172 T22: 0.0169 REMARK 3 T33: 0.0337 T12: -0.0041 REMARK 3 T13: 0.0107 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.3997 L22: 0.7878 REMARK 3 L33: 0.5334 L12: -0.1268 REMARK 3 L13: 0.0330 L23: 0.1641 REMARK 3 S TENSOR REMARK 3 S11: -0.0537 S12: 0.0174 S13: 0.0105 REMARK 3 S21: -0.0126 S22: 0.0844 S23: -0.0546 REMARK 3 S31: 0.0319 S32: 0.0423 S33: -0.0307 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 220 REMARK 3 ORIGIN FOR THE GROUP (A): -14.4461 1.4236 76.0740 REMARK 3 T TENSOR REMARK 3 T11: 0.0058 T22: 0.0413 REMARK 3 T33: 0.0163 T12: -0.0078 REMARK 3 T13: 0.0042 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.5026 L22: 0.5426 REMARK 3 L33: 0.1722 L12: 0.0539 REMARK 3 L13: -0.0285 L23: -0.0760 REMARK 3 S TENSOR REMARK 3 S11: -0.0292 S12: 0.0609 S13: 0.0339 REMARK 3 S21: -0.0126 S22: 0.0134 S23: 0.0137 REMARK 3 S31: 0.0204 S32: -0.0569 S33: 0.0158 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4Q04 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085436. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33977 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.23900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: PDB ENTRY 3SJS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ENHIA.01648.A.D11.PD00049 AT 11.96 REMARK 280 MG/ML AGAINST PRECIPITANT SYNERGY BLOCK 2, 20.1% PEG 1500, 2.01% REMARK 280 MPD, 0.2 M MAGNESIUM SULFATE, 0.1 M SODIUM ACETATE PH 5.5, REMARK 280 CRYSTAL TRACKING ID 248792C5, UNIQUE PUCK ID CJW8-9, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.68000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.71000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.71000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 140.52000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.71000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.71000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.84000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.71000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.71000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 140.52000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.71000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.71000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.84000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 93.68000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 416 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 PRO A 3 REMARK 465 PRO A 4 REMARK 465 VAL A 5 REMARK 465 ALA A 6 REMARK 465 ASN A 7 REMARK 465 PHE A 8 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 PRO B 3 REMARK 465 PRO B 4 REMARK 465 VAL B 5 REMARK 465 ALA B 6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 14 CG CD OE1 NE2 REMARK 470 GLN A 17 CG CD OE1 NE2 REMARK 470 TYR A 27 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 62 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 64 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 128 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 7 CG OD1 ND2 REMARK 470 GLN B 14 CG CD OE1 NE2 REMARK 470 GLN B 17 CG CD OE1 NE2 REMARK 470 ARG B 62 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 83 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 152 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 MG MG A 302 O HOH A 511 1.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 69 CD GLU B 69 OE2 0.088 REMARK 500 GLU B 117 CD GLU B 117 OE1 -0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 160 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 35 45.92 -97.26 REMARK 500 ASN B 12 53.43 -154.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 61 OD1 REMARK 620 2 ASP A 63 OD1 83.6 REMARK 620 3 SER A 65 OG 94.9 102.7 REMARK 620 4 HOH A 512 O 168.4 85.3 91.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 127 OD1 REMARK 620 2 ASN A 129 OD1 89.0 REMARK 620 3 SER A 131 OG 85.0 93.3 REMARK 620 4 THR A 133 O 94.6 164.9 72.5 REMARK 620 5 HOH A 496 O 170.8 86.3 87.4 88.0 REMARK 620 6 HOH A 497 O 104.8 94.5 167.6 98.7 83.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 127 OD1 REMARK 620 2 ASN B 129 OD1 77.4 REMARK 620 3 SER B 131 OG 88.8 77.9 REMARK 620 4 THR B 133 O 95.6 155.9 78.9 REMARK 620 5 HOH B 405 O 99.3 97.1 169.4 106.9 REMARK 620 6 HOH B 432 O 166.0 89.3 84.2 94.9 86.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SIA RELATED DB: PDB REMARK 900 D127A, N129A DELETION FOR ONE CALCIUM BINDING SITE, IODIDE REMARK 900 RELATED ID: 3SIB RELATED DB: PDB REMARK 900 WILD-TYPE, CALCIUM BOUND REMARK 900 RELATED ID: 3SJS RELATED DB: PDB REMARK 900 D127A, N129A DELETION FOR ONE CALCIUM BINDING SITE, NATIVE REMARK 900 RELATED ID: SSGCID-ENHIA.01648.A RELATED DB: TARGETTRACK DBREF 4Q04 A 1 220 UNP Q9GSV7 Q9GSV7_ENTHI 1 220 DBREF 4Q04 B 1 220 UNP Q9GSV7 Q9GSV7_ENTHI 1 220 SEQRES 1 A 220 MET GLN PRO PRO VAL ALA ASN PHE CYS LEU TRP ASN LEU SEQRES 2 A 220 GLN PRO ILE GLN GLY SER TRP MET GLY ALA ALA CYS ILE SEQRES 3 A 220 TYR GLN MET PRO PRO SER VAL ARG ASN THR TRP TRP PHE SEQRES 4 A 220 PRO LEU LEU ASN THR ILE PRO LEU ASP GLN TYR THR ARG SEQRES 5 A 220 ILE TYR GLN TRP PHE MET GLY VAL ASP ARG ASP ARG SER SEQRES 6 A 220 GLY THR LEU GLU ILE ASN GLU LEU MET MET GLY GLN PHE SEQRES 7 A 220 PRO GLY GLY ILE ARG LEU SER PRO GLN THR ALA LEU ARG SEQRES 8 A 220 MET MET ARG ILE PHE ASP THR ASP PHE ASN GLY HIS ILE SEQRES 9 A 220 SER PHE TYR GLU PHE MET ALA MET TYR LYS PHE MET GLU SEQRES 10 A 220 LEU ALA TYR ASN LEU PHE VAL MET ASN ASP ARG ASN ARG SEQRES 11 A 220 SER GLY THR LEU GLU PRO HIS GLU ILE LEU PRO ALA LEU SEQRES 12 A 220 GLN GLN LEU GLY PHE TYR ILE ASN GLN ARG THR SER LEU SEQRES 13 A 220 LEU LEU HIS ARG LEU PHE ALA ARG GLY MET ALA PHE CYS SEQRES 14 A 220 ASP LEU ASN CYS TRP ILE ALA ILE CYS ALA PHE ALA ALA SEQRES 15 A 220 GLN THR ARG SER ALA TYR GLN MET ILE PHE MET ASN PRO SEQRES 16 A 220 TYR TYR GLY PRO MET LYS PRO PHE ASN PRO MET GLU PHE SEQRES 17 A 220 GLY LYS PHE LEU ASP VAL VAL THR SER LEU LEU GLU SEQRES 1 B 220 MET GLN PRO PRO VAL ALA ASN PHE CYS LEU TRP ASN LEU SEQRES 2 B 220 GLN PRO ILE GLN GLY SER TRP MET GLY ALA ALA CYS ILE SEQRES 3 B 220 TYR GLN MET PRO PRO SER VAL ARG ASN THR TRP TRP PHE SEQRES 4 B 220 PRO LEU LEU ASN THR ILE PRO LEU ASP GLN TYR THR ARG SEQRES 5 B 220 ILE TYR GLN TRP PHE MET GLY VAL ASP ARG ASP ARG SER SEQRES 6 B 220 GLY THR LEU GLU ILE ASN GLU LEU MET MET GLY GLN PHE SEQRES 7 B 220 PRO GLY GLY ILE ARG LEU SER PRO GLN THR ALA LEU ARG SEQRES 8 B 220 MET MET ARG ILE PHE ASP THR ASP PHE ASN GLY HIS ILE SEQRES 9 B 220 SER PHE TYR GLU PHE MET ALA MET TYR LYS PHE MET GLU SEQRES 10 B 220 LEU ALA TYR ASN LEU PHE VAL MET ASN ASP ARG ASN ARG SEQRES 11 B 220 SER GLY THR LEU GLU PRO HIS GLU ILE LEU PRO ALA LEU SEQRES 12 B 220 GLN GLN LEU GLY PHE TYR ILE ASN GLN ARG THR SER LEU SEQRES 13 B 220 LEU LEU HIS ARG LEU PHE ALA ARG GLY MET ALA PHE CYS SEQRES 14 B 220 ASP LEU ASN CYS TRP ILE ALA ILE CYS ALA PHE ALA ALA SEQRES 15 B 220 GLN THR ARG SER ALA TYR GLN MET ILE PHE MET ASN PRO SEQRES 16 B 220 TYR TYR GLY PRO MET LYS PRO PHE ASN PRO MET GLU PHE SEQRES 17 B 220 GLY LYS PHE LEU ASP VAL VAL THR SER LEU LEU GLU HET NA A 301 1 HET MG A 302 1 HET NA B 301 1 HET SO4 B 302 5 HET GOL B 303 6 HETNAM NA SODIUM ION HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NA 2(NA 1+) FORMUL 4 MG MG 2+ FORMUL 6 SO4 O4 S 2- FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *285(H2 O) HELIX 1 1 GLY A 22 GLN A 28 1 7 HELIX 2 2 PRO A 30 ASN A 35 1 6 HELIX 3 3 TRP A 38 ILE A 45 5 8 HELIX 4 4 PRO A 46 ASP A 61 1 16 HELIX 5 5 GLU A 69 MET A 74 1 6 HELIX 6 6 PHE A 78 ILE A 82 5 5 HELIX 7 7 SER A 85 ASP A 97 1 13 HELIX 8 8 PHE A 106 ASP A 127 1 22 HELIX 9 9 GLU A 135 HIS A 137 5 3 HELIX 10 10 GLU A 138 GLY A 147 1 10 HELIX 11 11 ASN A 151 ALA A 163 1 13 HELIX 12 12 LEU A 171 MET A 193 1 23 HELIX 13 13 ASN A 194 GLY A 198 5 5 HELIX 14 14 ASN A 204 LEU A 218 1 15 HELIX 15 15 CYS B 9 LEU B 13 5 5 HELIX 16 16 ALA B 24 MET B 29 1 6 HELIX 17 17 PRO B 30 ASN B 35 1 6 HELIX 18 18 TRP B 38 ASN B 43 1 6 HELIX 19 19 PRO B 46 ASP B 61 1 16 HELIX 20 20 ILE B 70 MET B 74 1 5 HELIX 21 21 PHE B 78 ILE B 82 5 5 HELIX 22 22 SER B 85 ASP B 97 1 13 HELIX 23 23 PHE B 106 ASP B 127 1 22 HELIX 24 24 GLU B 135 HIS B 137 5 3 HELIX 25 25 GLU B 138 GLY B 147 1 10 HELIX 26 26 ASN B 151 ALA B 163 1 13 HELIX 27 27 ASP B 170 MET B 193 1 24 HELIX 28 28 ASN B 194 GLY B 198 5 5 HELIX 29 29 ASN B 204 LEU B 219 1 16 SHEET 1 A 2 THR A 67 LEU A 68 0 SHEET 2 A 2 ILE A 104 SER A 105 -1 O ILE A 104 N LEU A 68 SHEET 1 B 2 THR A 133 LEU A 134 0 SHEET 2 B 2 CYS A 169 ASP A 170 -1 O CYS A 169 N LEU A 134 SHEET 1 C 2 THR B 67 GLU B 69 0 SHEET 2 C 2 HIS B 103 SER B 105 -1 O ILE B 104 N LEU B 68 LINK OD1 ASP A 61 MG MG A 302 1555 1555 2.09 LINK OD1 ASP A 63 MG MG A 302 1555 1555 2.27 LINK OG SER A 65 MG MG A 302 1555 1555 2.00 LINK OD1 ASP A 127 NA NA A 301 1555 1555 2.23 LINK OD1 ASN A 129 NA NA A 301 1555 1555 2.27 LINK OG SER A 131 NA NA A 301 1555 1555 2.50 LINK O THR A 133 NA NA A 301 1555 1555 2.44 LINK NA NA A 301 O HOH A 496 1555 1555 2.02 LINK NA NA A 301 O HOH A 497 1555 1555 2.29 LINK MG MG A 302 O HOH A 512 1555 1555 2.22 LINK OD1 ASP B 127 NA NA B 301 1555 1555 2.43 LINK OD1 ASN B 129 NA NA B 301 1555 1555 2.42 LINK OG SER B 131 NA NA B 301 1555 1555 2.47 LINK O THR B 133 NA NA B 301 1555 1555 2.28 LINK NA NA B 301 O HOH B 405 1555 1555 2.22 LINK NA NA B 301 O HOH B 432 1555 1555 2.38 SITE 1 AC1 6 ASP A 127 ASN A 129 SER A 131 THR A 133 SITE 2 AC1 6 HOH A 496 HOH A 497 SITE 1 AC2 6 ASP A 61 ASP A 63 SER A 65 THR A 67 SITE 2 AC2 6 HOH A 511 HOH A 512 SITE 1 AC3 6 ASP B 127 ASN B 129 SER B 131 THR B 133 SITE 2 AC3 6 HOH B 405 HOH B 432 SITE 1 AC4 4 ARG A 130 GLN B 49 ARG B 52 TYR B 113 SITE 1 AC5 7 PHE B 96 ASP B 97 ASP B 99 ASN B 101 SITE 2 AC5 7 HIS B 103 ILE B 104 GLU B 108 CRYST1 69.420 69.420 187.360 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014405 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014405 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005337 0.00000