HEADER ISOMERASE 02-APR-14 4Q0Q TITLE CRYSTAL STRUCTURE OF ACINETOBACTER SP. DL28 L-RIBOSE ISOMERASE IN TITLE 2 COMPLEX WITH L-RIBULOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-RIBOSE ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 5.3.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER; SOURCE 3 ORGANISM_TAXID: 160971; SOURCE 4 STRAIN: DL-28; SOURCE 5 GENE: L-RI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS CUPIN BARREL, ISOMERASE, SUGAR BINDING EXPDTA X-RAY DIFFRACTION AUTHOR H.YOSHIDA,A.YOSHIHARA,M.TERAOKA,K.IZUMORI,S.KAMITORI REVDAT 5 08-NOV-23 4Q0Q 1 REMARK REVDAT 4 24-AUG-22 4Q0Q 1 JRNL HETSYN REVDAT 3 29-JUL-20 4Q0Q 1 REMARK SEQADV LINK SITE REVDAT 2 11-JUN-14 4Q0Q 1 JRNL REVDAT 1 28-MAY-14 4Q0Q 0 JRNL AUTH H.YOSHIDA,A.YOSHIHARA,M.TERAOKA,Y.TERAMI,G.TAKATA,K.IZUMORI, JRNL AUTH 2 S.KAMITORI JRNL TITL X-RAY STRUCTURE OF A NOVEL L-RIBOSE ISOMERASE ACTING ON A JRNL TITL 2 NON-NATURAL SUGAR L-RIBOSE AS ITS IDEAL SUBSTRATE. JRNL REF FEBS J. V. 281 3150 2014 JRNL REFN ISSN 1742-464X JRNL PMID 24846739 JRNL DOI 10.1111/FEBS.12850 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.YOSHIDA,M.TERAOKA,A.YOSHIHARA,K.IZUMORI,S.KAMITORI REMARK 1 TITL OVEREXPRESSION, CRYSTALLIZATION AND PRELIMINARY X-RAY REMARK 1 TITL 2 DIFFRACTION ANALYSIS OF L-RIBOSE ISOMERASE FROM REMARK 1 TITL 3 ACINETOBACTER SP. STRAIN DL-28 REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 67 1281 2011 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 22102048 REMARK 1 DOI 10.1107/S1744309111030351 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 7042759.740 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 22932 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2276 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.93 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2076 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 211 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.023 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1930 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.00000 REMARK 3 B22 (A**2) : -4.95000 REMARK 3 B33 (A**2) : 8.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.31 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.34 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.900 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.240 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.890 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.980 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.720 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.50 REMARK 3 BSOL : 64.62 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : LIGAND.PARAM REMARK 3 PARAMETER FILE 7 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 6 : LIGAND.TOP REMARK 3 TOPOLOGY FILE 7 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 4Q0Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085458. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS VII REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22933 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 20.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.36300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4Q0P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-16%(V/V) PEG400, 0.2M NACL, 0.1M REMARK 280 HEPES, 0.02M HEXAAMMINE COBALT(III) CHLORIDE, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.71000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 59.06000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.71000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.06000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.71000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.06000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.71000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.06000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 47.71000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 59.06000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 47.71000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 59.06000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 47.71000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 59.06000 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 47.71000 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 59.06000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 47.71000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 53.71000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 47.71000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 53.71000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 47.71000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 53.71000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 47.71000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 53.71000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 53.71000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 59.06000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 47.71000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 59.06000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 47.71000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 53.71000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 ARG A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 103 N - CA - C ANGL. DEV. = -20.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 70 77.78 -152.40 REMARK 500 SER A 88 -148.22 -108.42 REMARK 500 SER A 134 122.91 -38.19 REMARK 500 PHE A 141 -64.06 -145.05 REMARK 500 ALA A 217 102.98 -56.93 REMARK 500 ASP A 231 30.42 -82.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 501 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 106 NE2 REMARK 620 2 HIS A 108 NE2 91.8 REMARK 620 3 GLU A 113 OE2 176.9 85.2 REMARK 620 4 HIS A 188 NE2 84.3 117.0 96.8 REMARK 620 5 RUU A 502 O2 98.7 85.9 81.3 156.9 REMARK 620 6 RUU A 502 O1 91.7 160.9 91.2 82.1 75.0 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Q0P RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF WILD-TYPE ENZYME COMPLEXED WITH L-RIBOSE REMARK 900 RELATED ID: 4Q0S RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF WILD-TYPE ENZYME COMPLEXED WITH RIBITOL REMARK 900 RELATED ID: 4Q0U RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF E204Q MUTANT COMPLEXED WITH L-RIBOSE REMARK 900 RELATED ID: 4Q0V RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF E204Q MUTANT COMPLEXED WITH L-RIBULOSE DBREF 4Q0Q A 3 249 UNP Q93UQ5 Q93UQ5_9GAMM 3 249 SEQADV 4Q0Q MET A -10 UNP Q93UQ5 EXPRESSION TAG SEQADV 4Q0Q ARG A -9 UNP Q93UQ5 EXPRESSION TAG SEQADV 4Q0Q GLY A -8 UNP Q93UQ5 EXPRESSION TAG SEQADV 4Q0Q SER A -7 UNP Q93UQ5 EXPRESSION TAG SEQADV 4Q0Q HIS A -6 UNP Q93UQ5 EXPRESSION TAG SEQADV 4Q0Q HIS A -5 UNP Q93UQ5 EXPRESSION TAG SEQADV 4Q0Q HIS A -4 UNP Q93UQ5 EXPRESSION TAG SEQADV 4Q0Q HIS A -3 UNP Q93UQ5 EXPRESSION TAG SEQADV 4Q0Q HIS A -2 UNP Q93UQ5 EXPRESSION TAG SEQADV 4Q0Q HIS A -1 UNP Q93UQ5 EXPRESSION TAG SEQADV 4Q0Q GLY A 0 UNP Q93UQ5 EXPRESSION TAG SEQADV 4Q0Q SER A 1 UNP Q93UQ5 EXPRESSION TAG SEQADV 4Q0Q ALA A 2 UNP Q93UQ5 EXPRESSION TAG SEQRES 1 A 260 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ALA SEQRES 2 A 260 ARG THR SER ILE THR ARG ARG GLU TYR ASP GLU TRP VAL SEQRES 3 A 260 ARG GLU ALA ALA ALA LEU GLY LYS ALA LEU ARG TYR PRO SEQRES 4 A 260 ILE THR GLU LYS MET VAL ASN ASP SER ALA GLY ILE VAL SEQRES 5 A 260 PHE GLY ALA ASP GLN TYR ASP ALA PHE LYS ASN GLY MET SEQRES 6 A 260 TRP SER GLY GLU PRO TYR GLU ALA MET ILE ILE PHE GLU SEQRES 7 A 260 SER LEU ASN GLU PRO ALA VAL ASP GLY LEU PRO THR GLY SEQRES 8 A 260 ALA ALA PRO TYR ALA GLU TYR SER GLY LEU CYS ASP LYS SEQRES 9 A 260 LEU MET ILE VAL HIS PRO GLY LYS PHE CYS PRO PRO HIS SEQRES 10 A 260 HIS HIS GLY ARG LYS THR GLU SER TYR GLU VAL VAL LEU SEQRES 11 A 260 GLY GLU MET GLU VAL PHE TYR SER PRO THR PRO SER ALA SEQRES 12 A 260 GLU SER GLY VAL GLU LEU LEU ASN PHE SER GLY MET PRO SEQRES 13 A 260 VAL GLY SER PRO TRP PRO GLU GLY VAL ALA LEU PRO LYS SEQRES 14 A 260 GLY ARG GLU SER SER TYR GLU LYS LEU THR SER TYR VAL SEQRES 15 A 260 ARG LEU ARG ALA GLY ASP PRO LYS PHE VAL MET HIS ARG SEQRES 16 A 260 LYS HIS LEU HIS ALA PHE ARG CYS PRO PRO ASP SER ASP SEQRES 17 A 260 VAL PRO LEU VAL VAL ARG GLU VAL SER THR TYR SER HIS SEQRES 18 A 260 GLU PRO THR GLU ALA ALA ALA GLY ASN HIS ALA PRO ILE SEQRES 19 A 260 PRO SER TRP LEU GLY MET HIS ASP ASN ASP PHE VAL SER SEQRES 20 A 260 ASP ALA ALA ASN THR GLY ARG LEU GLN THR ALA ILE SER HET CO A 501 1 HET RUU A 502 10 HET RUU A 503 10 HET QDK A 504 10 HET RUU A 505 10 HET RUU A 506 10 HET RUU A 507 10 HET RUU A 508 10 HET RUU A 509 10 HET NCO A 510 7 HETNAM CO COBALT (II) ION HETNAM RUU ALPHA-L-RIBULOFURANOSE HETNAM QDK L-RIBULOSE HETNAM NCO COBALT HEXAMMINE(III) HETSYN RUU ALPHA-L-RIBULOSE; L-RIBULOSE; RIBULOSE FORMUL 2 CO CO 2+ FORMUL 3 RUU 7(C5 H10 O5) FORMUL 5 QDK C5 H10 O5 FORMUL 11 NCO CO H18 N6 3+ FORMUL 12 HOH *91(H2 O) HELIX 1 1 THR A 7 LEU A 25 1 19 HELIX 2 2 THR A 30 VAL A 34 5 5 HELIX 3 3 GLY A 43 TYR A 47 5 5 HELIX 4 4 ASP A 48 GLY A 53 1 6 HELIX 5 5 PRO A 78 SER A 88 5 11 HELIX 6 6 ARG A 160 GLU A 165 5 6 HELIX 7 7 THR A 213 ALA A 217 5 5 HELIX 8 8 ILE A 223 LEU A 227 5 5 HELIX 9 9 SER A 236 LEU A 244 1 9 SHEET 1 A 6 GLY A 39 VAL A 41 0 SHEET 2 A 6 ALA A 62 GLU A 71 -1 O MET A 63 N ILE A 40 SHEET 3 A 6 LEU A 90 VAL A 97 -1 O LEU A 90 N GLU A 71 SHEET 4 A 6 LEU A 200 SER A 206 -1 O LEU A 200 N VAL A 97 SHEET 5 A 6 GLU A 113 LEU A 119 -1 N VAL A 118 O VAL A 201 SHEET 6 A 6 PHE A 180 MET A 182 -1 O MET A 182 N GLU A 113 SHEET 1 B 5 SER A 169 ARG A 174 0 SHEET 2 B 5 GLU A 121 TYR A 126 -1 N MET A 122 O LEU A 173 SHEET 3 B 5 HIS A 188 ARG A 191 -1 O ALA A 189 N PHE A 125 SHEET 4 B 5 PHE A 102 HIS A 107 -1 N CYS A 103 O PHE A 190 SHEET 5 B 5 ASP A 233 PHE A 234 -1 O ASP A 233 N HIS A 107 LINK NE2 HIS A 106 CO CO A 501 1555 1555 2.32 LINK NE2 HIS A 108 CO CO A 501 1555 1555 2.20 LINK OE2 GLU A 113 CO CO A 501 1555 1555 2.14 LINK NE2 HIS A 188 CO CO A 501 1555 1555 2.18 LINK CO CO A 501 O2 RUU A 502 1555 1555 2.31 LINK CO CO A 501 O1 RUU A 502 1555 1555 2.31 CRYST1 95.420 107.420 118.120 90.00 90.00 90.00 F 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010480 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009309 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008466 0.00000