HEADER IMMUNE SYSTEM/VIRAL PROTEIN 02-APR-14 4Q0X TITLE CRYSTAL STRUCTURE OF NON-NEUTRALIZING ANTIBODY IN COMPLEX WITH EPITOPE TITLE 2 II OF HCV E2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAB 12 HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 FRAGMENT: FAB; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MAB 12 LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 FRAGMENT: FAB; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: ENVELOPE GLYCOPROTEIN E2; COMPND 11 CHAIN: E; COMPND 12 FRAGMENT: EPITOPE II (UNP RESIDUES 421-446); COMPND 13 SYNONYM: NS1, GP68, GP70 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: MOUSE; SOURCE 8 ORGANISM_TAXID: 10090; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; SOURCE 11 ORGANISM_COMMON: HCV; SOURCE 12 ORGANISM_TAXID: 11103 KEYWDS ANTIBODY, ANTI-HCV E2, HCV E2, IMMUNE SYSTEM-VIRAL PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.DENG,P.ZHANG REVDAT 3 06-AUG-14 4Q0X 1 JRNL REVDAT 2 23-JUL-14 4Q0X 1 JRNL REVDAT 1 09-JUL-14 4Q0X 0 JRNL AUTH L.DENG,L.MA,M.L.VIRATA-THEIMER,L.ZHONG,H.YAN,Z.ZHAO, JRNL AUTH 2 E.STRUBLE,S.FEINSTONE,H.ALTER,P.ZHANG JRNL TITL DISCRETE CONFORMATIONS OF EPITOPE II ON THE HEPATITIS C JRNL TITL 2 VIRUS E2 PROTEIN FOR ANTIBODY-MEDIATED NEUTRALIZATION AND JRNL TITL 3 NONNEUTRALIZATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 10690 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 25002515 JRNL DOI 10.1073/PNAS.1411317111 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 11454 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 606 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 826 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.3370 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.4360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3398 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.45000 REMARK 3 B22 (A**2) : 1.45000 REMARK 3 B33 (A**2) : -2.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.459 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.379 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 44.623 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.887 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3489 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4756 ; 1.222 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 439 ;12.255 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 137 ;34.695 ;24.161 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 546 ;16.759 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;21.435 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 530 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2633 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1768 ; 0.981 ; 5.011 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2203 ; 1.797 ; 7.502 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1717 ; 0.657 ; 5.008 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5049 ; 5.019 ;42.177 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 117 REMARK 3 RESIDUE RANGE : L 1 L 112 REMARK 3 ORIGIN FOR THE GROUP (A): 2.9876 13.4151 17.0542 REMARK 3 T TENSOR REMARK 3 T11: 0.4646 T22: 0.0564 REMARK 3 T33: 0.0303 T12: -0.0363 REMARK 3 T13: -0.0149 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 1.8667 L22: 4.0824 REMARK 3 L33: 2.7444 L12: 0.4699 REMARK 3 L13: 0.8429 L23: -0.5057 REMARK 3 S TENSOR REMARK 3 S11: -0.0658 S12: 0.1221 S13: 0.0434 REMARK 3 S21: -0.6257 S22: 0.1024 S23: 0.2112 REMARK 3 S31: -0.2303 S32: -0.1706 S33: -0.0366 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 123 H 218 REMARK 3 RESIDUE RANGE : L 115 L 217 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9172 -5.9579 44.7724 REMARK 3 T TENSOR REMARK 3 T11: 0.0727 T22: 0.0715 REMARK 3 T33: 0.1716 T12: -0.0320 REMARK 3 T13: 0.0425 T23: -0.0402 REMARK 3 L TENSOR REMARK 3 L11: 3.4601 L22: 2.7127 REMARK 3 L33: 2.5446 L12: 0.9980 REMARK 3 L13: 1.1802 L23: 0.4889 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: -0.2810 S13: -0.1696 REMARK 3 S21: -0.3743 S22: 0.0804 S23: -0.1808 REMARK 3 S31: -0.0786 S32: 0.1346 S33: -0.0880 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Q0X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-APR-14. REMARK 100 THE RCSB ID CODE IS RCSB085465. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12050 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 97.646 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M IMIDAZOLE, 14% W/V PEG550 MME, REMARK 280 PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 195.29250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 292.93875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 97.64625 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 195.29250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 97.64625 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 292.93875 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN H 137 REMARK 465 THR H 138 REMARK 465 ASN H 139 REMARK 465 HIS E 421 REMARK 465 ILE E 422 REMARK 465 ASN E 423 REMARK 465 SER E 424 REMARK 465 THR E 425 REMARK 465 ALA E 426 REMARK 465 LEU E 427 REMARK 465 ASN E 428 REMARK 465 CYS E 429 REMARK 465 ASN E 430 REMARK 465 GLU E 431 REMARK 465 SER E 432 REMARK 465 LEU E 433 REMARK 465 TYR E 443 REMARK 465 GLN E 444 REMARK 465 HIS E 445 REMARK 465 LYS E 446 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE H 152 C PRO H 153 N 0.203 REMARK 500 GLU H 154 C PRO H 155 N 0.124 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO H 153 C - N - CA ANGL. DEV. = -15.7 DEGREES REMARK 500 PRO H 155 C - N - CA ANGL. DEV. = -19.6 DEGREES REMARK 500 PRO H 195 C - N - CD ANGL. DEV. = 19.5 DEGREES REMARK 500 PRO L 146 C - N - CD ANGL. DEV. = 18.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL H 56 7.18 54.50 REMARK 500 SER H 84 -83.28 -104.01 REMARK 500 ASP H 102 18.18 58.67 REMARK 500 ALA H 135 -132.80 -102.55 REMARK 500 SER H 162 10.23 59.61 REMARK 500 SER H 178 67.34 61.68 REMARK 500 VAL L 56 -58.28 70.41 REMARK 500 ALA L 85 -51.12 66.44 REMARK 500 LYS L 174 -61.76 -107.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE H 152 PRO H 153 -67.15 REMARK 500 GLU H 154 PRO H 155 62.88 REMARK 500 TRP H 194 PRO H 195 32.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PHE H 152 -15.10 REMARK 500 GLU H 154 10.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HZL RELATED DB: PDB REMARK 900 STRUCTURAL EVIDENCE FOR A BIFURCATED MODE OF ACTION IN THE REMARK 900 ANTIBODY-MEDIATED NEUTRALIZATION OF HEPATITIS C VIRUS DBREF 4Q0X E 421 446 UNP P27958 POLG_HCVH 421 446 DBREF 4Q0X H 1 219 PDB 4Q0X 4Q0X 1 219 DBREF 4Q0X L 1 218 PDB 4Q0X 4Q0X 1 218 SEQRES 1 H 219 GLN VAL GLN LEU ARG GLN SER GLY PRO GLU LEU VAL LYS SEQRES 2 H 219 PRO GLY ALA SER VAL ARG ILE SER CYS LYS ALA SER GLY SEQRES 3 H 219 TYR THR PHE THR SER TYR TYR ILE HIS TRP VAL LYS GLN SEQRES 4 H 219 ARG PRO GLY GLN GLY LEU GLU TRP ILE GLY TRP ILE TYR SEQRES 5 H 219 PRO GLY ASN VAL ASN THR LYS TYR ASN GLU LYS PHE LYS SEQRES 6 H 219 GLY LYS ALA THR LEU THR ALA ASP LYS SER SER SER THR SEQRES 7 H 219 ALA TYR MET GLN LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 H 219 ALA VAL TYR PHE CYS ALA ARG ASP ASP TYR ASP GLY ALA SEQRES 9 H 219 TRP PHE ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 H 219 SER ALA ALA LYS THR THR PRO PRO SER VAL TYR PRO LEU SEQRES 11 H 219 ALA PRO GLY SER ALA ALA GLN THR ASN SER MET VAL THR SEQRES 12 H 219 LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL SEQRES 13 H 219 THR VAL THR TRP ASN SER GLY SER LEU SER SER GLY VAL SEQRES 14 H 219 HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR SEQRES 15 H 219 LEU SER SER SER VAL THR VAL PRO SER SER THR TRP PRO SEQRES 16 H 219 SER GLN THR VAL THR CYS ASN VAL ALA HIS PRO ALA SER SEQRES 17 H 219 SER THR LYS VAL ASP LYS LYS ILE VAL PRO ARG SEQRES 1 L 218 ASP VAL LEU MET THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 L 218 SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 218 GLN SER ILE VAL HIS ASN ASN GLY ASN THR TYR LEU ASP SEQRES 4 L 218 TRP SER LEU GLN LYS PRO GLY GLN SER PRO LYS LEU LEU SEQRES 5 L 218 ILE TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 L 218 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 218 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR SEQRES 8 L 218 TYR CYS PHE GLN GLY SER HIS VAL PRO PRO THR PHE GLY SEQRES 9 L 218 GLY GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA SEQRES 10 L 218 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 L 218 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 L 218 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 L 218 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 L 218 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 L 218 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 L 218 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 L 218 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU SEQRES 1 E 26 HIS ILE ASN SER THR ALA LEU ASN CYS ASN GLU SER LEU SEQRES 2 E 26 ASN THR GLY TRP LEU ALA GLY LEU PHE TYR GLN HIS LYS FORMUL 4 HOH *23(H2 O) HELIX 1 1 THR H 28 TYR H 32 5 5 HELIX 2 2 GLU H 62 LYS H 65 5 4 HELIX 3 3 THR H 87 SER H 91 5 5 HELIX 4 4 SER H 162 SER H 164 5 3 HELIX 5 5 SER L 126 THR L 131 1 6 HELIX 6 6 LYS L 188 GLU L 192 1 5 HELIX 7 7 GLY E 436 PHE E 442 1 7 SHEET 1 A 4 GLN H 3 GLN H 6 0 SHEET 2 A 4 VAL H 18 SER H 25 -1 O LYS H 23 N ARG H 5 SHEET 3 A 4 THR H 78 LEU H 83 -1 O ALA H 79 N CYS H 22 SHEET 4 A 4 ALA H 68 ASP H 73 -1 N THR H 71 O TYR H 80 SHEET 1 B 6 GLU H 10 VAL H 12 0 SHEET 2 B 6 THR H 113 VAL H 117 1 O LEU H 114 N GLU H 10 SHEET 3 B 6 ALA H 92 ASP H 100 -1 N ALA H 92 O VAL H 115 SHEET 4 B 6 ILE H 34 ARG H 40 -1 N HIS H 35 O ALA H 97 SHEET 5 B 6 GLY H 44 TYR H 52 -1 O GLU H 46 N LYS H 38 SHEET 6 B 6 ASN H 57 TYR H 60 -1 O ASN H 57 N TYR H 52 SHEET 1 C 4 GLU H 10 VAL H 12 0 SHEET 2 C 4 THR H 113 VAL H 117 1 O LEU H 114 N GLU H 10 SHEET 3 C 4 ALA H 92 ASP H 100 -1 N ALA H 92 O VAL H 115 SHEET 4 C 4 ALA H 104 TRP H 109 -1 O ALA H 107 N ARG H 98 SHEET 1 D 4 SER H 126 LEU H 130 0 SHEET 2 D 4 MET H 141 TYR H 151 -1 O GLY H 145 N LEU H 130 SHEET 3 D 4 TYR H 181 PRO H 190 -1 O LEU H 183 N VAL H 148 SHEET 4 D 4 VAL H 169 THR H 171 -1 N HIS H 170 O SER H 186 SHEET 1 E 4 SER H 126 LEU H 130 0 SHEET 2 E 4 MET H 141 TYR H 151 -1 O GLY H 145 N LEU H 130 SHEET 3 E 4 TYR H 181 PRO H 190 -1 O LEU H 183 N VAL H 148 SHEET 4 E 4 VAL H 175 LEU H 176 -1 N VAL H 175 O THR H 182 SHEET 1 F 3 THR H 157 TRP H 160 0 SHEET 2 F 3 THR H 200 HIS H 205 -1 O ALA H 204 N THR H 157 SHEET 3 F 3 THR H 210 LYS H 215 -1 O VAL H 212 N VAL H 203 SHEET 1 G 4 MET L 4 THR L 5 0 SHEET 2 G 4 ALA L 19 SER L 25 -1 O ARG L 24 N THR L 5 SHEET 3 G 4 ASP L 75 ILE L 80 -1 O LEU L 78 N ILE L 21 SHEET 4 G 4 PHE L 67 SER L 72 -1 N SER L 68 O LYS L 79 SHEET 1 H 6 SER L 10 VAL L 13 0 SHEET 2 H 6 THR L 107 ILE L 111 1 O LYS L 108 N LEU L 11 SHEET 3 H 6 GLY L 89 GLN L 95 -1 N TYR L 91 O THR L 107 SHEET 4 H 6 LEU L 38 GLN L 43 -1 N GLN L 43 O VAL L 90 SHEET 5 H 6 PRO L 49 TYR L 54 -1 O LEU L 52 N TRP L 40 SHEET 6 H 6 ASN L 58 ARG L 59 -1 O ASN L 58 N TYR L 54 SHEET 1 I 4 SER L 10 VAL L 13 0 SHEET 2 I 4 THR L 107 ILE L 111 1 O LYS L 108 N LEU L 11 SHEET 3 I 4 GLY L 89 GLN L 95 -1 N TYR L 91 O THR L 107 SHEET 4 I 4 THR L 102 PHE L 103 -1 O THR L 102 N GLN L 95 SHEET 1 J 4 THR L 119 PHE L 123 0 SHEET 2 J 4 GLY L 134 PHE L 144 -1 O VAL L 138 N PHE L 123 SHEET 3 J 4 TYR L 178 THR L 187 -1 O MET L 180 N LEU L 141 SHEET 4 J 4 VAL L 164 TRP L 168 -1 N SER L 167 O SER L 181 SHEET 1 K 4 SER L 158 ARG L 160 0 SHEET 2 K 4 ASN L 150 ILE L 155 -1 N ILE L 155 O SER L 158 SHEET 3 K 4 SER L 196 THR L 202 -1 O THR L 198 N LYS L 154 SHEET 4 K 4 ILE L 210 ASN L 215 -1 O LYS L 212 N CYS L 199 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.04 SSBOND 2 CYS H 146 CYS H 201 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 93 1555 1555 2.04 SSBOND 4 CYS L 139 CYS L 199 1555 1555 2.03 CISPEP 1 TYR L 145 PRO L 146 0 -9.91 CRYST1 49.991 49.991 390.585 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020004 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020004 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002560 0.00000