HEADER HYDROLASE/HYDROLASE INHIBITOR 04-APR-14 4Q1N TITLE STRUCTURE-BASED DESIGN OF 4-HYDROXY-3,5-SUBSTITUTED PIPERIDINES AS TITLE 2 DIRECT RENIN INHIBITORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RENIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ANGIOTENSINOGENASE; COMPND 5 EC: 3.4.23.15; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: REN; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK KEYWDS ASPARTIC PROTEASE, ANGIOTENSIN, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.SCHIERING,A.D'ARCY,O.IRIE,F.YOKOKAWA REVDAT 4 09-OCT-24 4Q1N 1 HETSYN REVDAT 3 29-JUL-20 4Q1N 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 22-NOV-17 4Q1N 1 REMARK REVDAT 1 06-AUG-14 4Q1N 0 JRNL AUTH T.EHARA,O.IRIE,T.KOSAKA,T.KANAZAWA,W.BREITENSTEIN,P.GROSCHE, JRNL AUTH 2 N.OSTERMANN,M.SUZUKI,S.KAWAKAMI,K.KONISHI,Y.HITOMI,A.TOYAO, JRNL AUTH 3 H.GUNJI,F.CUMIN,N.SCHIERING,T.WAGNER,D.F.RIGEL,R.L.WEBB, JRNL AUTH 4 J.MAIBAUM,F.YOKOKAWA JRNL TITL STRUCTURE-BASED DESIGN OF SUBSTITUTED PIPERIDINES AS A NEW JRNL TITL 2 CLASS OF HIGHLY EFFICACIOUS ORAL DIRECT RENIN INHIBITORS. JRNL REF ACS MED CHEM LETT V. 5 787 2014 JRNL REFN ISSN 1948-5875 JRNL PMID 25050166 JRNL DOI 10.1021/ML500137B REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 55184 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2759 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.14 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4055 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1883 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3852 REMARK 3 BIN R VALUE (WORKING SET) : 0.1879 REMARK 3 BIN FREE R VALUE : 0.1943 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.01 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 203 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5184 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 113 REMARK 3 SOLVENT ATOMS : 415 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.224 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.149 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5469 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7434 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1833 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 113 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 802 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5469 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 732 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6597 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.16 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.07 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.22 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 66.5947 11.6126 41.0916 REMARK 3 T TENSOR REMARK 3 T11: -0.0210 T22: -0.0815 REMARK 3 T33: -0.0347 T12: 0.0017 REMARK 3 T13: -0.0394 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 0.6594 L22: 0.6197 REMARK 3 L33: 1.1896 L12: 0.2926 REMARK 3 L13: -0.4380 L23: -0.4687 REMARK 3 S TENSOR REMARK 3 S11: -0.0908 S12: 0.0724 S13: -0.0153 REMARK 3 S21: -0.1492 S22: 0.0295 S23: 0.0333 REMARK 3 S31: 0.1361 S32: -0.0913 S33: 0.0612 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 83.1262 35.0445 17.3247 REMARK 3 T TENSOR REMARK 3 T11: -0.0212 T22: -0.0999 REMARK 3 T33: -0.0977 T12: 0.0307 REMARK 3 T13: 0.0254 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.3197 L22: 1.1266 REMARK 3 L33: 0.9512 L12: 0.1546 REMARK 3 L13: 0.1396 L23: -0.2455 REMARK 3 S TENSOR REMARK 3 S11: -0.0924 S12: 0.1229 S13: -0.0731 REMARK 3 S21: -0.1813 S22: 0.0003 S23: -0.1483 REMARK 3 S31: 0.0562 S32: 0.0792 S33: 0.0921 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Q1N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085491. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55186 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 62.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.52000 REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 0.6 M NACL, 0.05M SODIUM REMARK 280 CITRATE, PH 4.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 70.42700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.42700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 70.42700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.42700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 70.42700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 70.42700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 70.42700 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 70.42700 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 70.42700 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 70.42700 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 70.42700 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 70.42700 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 70.42700 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 70.42700 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 70.42700 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 70.42700 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 70.42700 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 70.42700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 72880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 140.85400 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -70.42700 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 70.42700 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 70.42700 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 70.42700 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 140.85400 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 158A REMARK 465 GLU A 158B REMARK 465 ASN A 158C REMARK 465 SER A 158D REMARK 465 SER B 158A REMARK 465 GLU B 158B REMARK 465 ASN B 158C REMARK 465 SER B 158D REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN B 160C CA - C - N ANGL. DEV. = -13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 67 -65.33 -136.41 REMARK 500 ALA A 285 33.21 -86.22 REMARK 500 ASN B 67 -64.89 -137.01 REMARK 500 ARG B 240 -88.69 -67.11 REMARK 500 LEU B 241 -59.52 -127.52 REMARK 500 ALA B 285 32.51 -86.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PYV RELATED DB: PDB DBREF 4Q1N A -5 326 UNP P00797 RENI_HUMAN 67 406 DBREF 4Q1N B -5 326 UNP P00797 RENI_HUMAN 67 406 SEQRES 1 A 340 LEU THR LEU GLY ASN THR THR SER SER VAL ILE LEU THR SEQRES 2 A 340 ASN TYR MET ASP THR GLN TYR TYR GLY GLU ILE GLY ILE SEQRES 3 A 340 GLY THR PRO PRO GLN THR PHE LYS VAL VAL PHE ASP THR SEQRES 4 A 340 GLY SER SER ASN VAL TRP VAL PRO SER SER LYS CYS SER SEQRES 5 A 340 ARG LEU TYR THR ALA CYS VAL TYR HIS LYS LEU PHE ASP SEQRES 6 A 340 ALA SER ASP SER SER SER TYR LYS HIS ASN GLY THR GLU SEQRES 7 A 340 LEU THR LEU ARG TYR SER THR GLY THR VAL SER GLY PHE SEQRES 8 A 340 LEU SER GLN ASP ILE ILE THR VAL GLY GLY ILE THR VAL SEQRES 9 A 340 THR GLN MET PHE GLY GLU VAL THR GLU MET PRO ALA LEU SEQRES 10 A 340 PRO PHE MET LEU ALA GLU PHE ASP GLY VAL VAL GLY MET SEQRES 11 A 340 GLY PHE ILE GLU GLN ALA ILE GLY ARG VAL THR PRO ILE SEQRES 12 A 340 PHE ASP ASN ILE ILE SER GLN GLY VAL LEU LYS GLU ASP SEQRES 13 A 340 VAL PHE SER PHE TYR TYR ASN ARG ASP SER GLU ASN SER SEQRES 14 A 340 GLN SER LEU GLY GLY GLN ILE VAL LEU GLY GLY SER ASP SEQRES 15 A 340 PRO GLN HIS TYR GLU GLY ASN PHE HIS TYR ILE ASN LEU SEQRES 16 A 340 ILE LYS THR GLY VAL TRP GLN ILE GLN MET LYS GLY VAL SEQRES 17 A 340 SER VAL GLY SER SER THR LEU LEU CYS GLU ASP GLY CYS SEQRES 18 A 340 LEU ALA LEU VAL ASP THR GLY ALA SER TYR ILE SER GLY SEQRES 19 A 340 SER THR SER SER ILE GLU LYS LEU MET GLU ALA LEU GLY SEQRES 20 A 340 ALA LYS LYS ARG LEU PHE ASP TYR VAL VAL LYS CYS ASN SEQRES 21 A 340 GLU GLY PRO THR LEU PRO ASP ILE SER PHE HIS LEU GLY SEQRES 22 A 340 GLY LYS GLU TYR THR LEU THR SER ALA ASP TYR VAL PHE SEQRES 23 A 340 GLN GLU SER TYR SER SER LYS LYS LEU CYS THR LEU ALA SEQRES 24 A 340 ILE HIS ALA MET ASP ILE PRO PRO PRO THR GLY PRO THR SEQRES 25 A 340 TRP ALA LEU GLY ALA THR PHE ILE ARG LYS PHE TYR THR SEQRES 26 A 340 GLU PHE ASP ARG ARG ASN ASN ARG ILE GLY PHE ALA LEU SEQRES 27 A 340 ALA ARG SEQRES 1 B 340 LEU THR LEU GLY ASN THR THR SER SER VAL ILE LEU THR SEQRES 2 B 340 ASN TYR MET ASP THR GLN TYR TYR GLY GLU ILE GLY ILE SEQRES 3 B 340 GLY THR PRO PRO GLN THR PHE LYS VAL VAL PHE ASP THR SEQRES 4 B 340 GLY SER SER ASN VAL TRP VAL PRO SER SER LYS CYS SER SEQRES 5 B 340 ARG LEU TYR THR ALA CYS VAL TYR HIS LYS LEU PHE ASP SEQRES 6 B 340 ALA SER ASP SER SER SER TYR LYS HIS ASN GLY THR GLU SEQRES 7 B 340 LEU THR LEU ARG TYR SER THR GLY THR VAL SER GLY PHE SEQRES 8 B 340 LEU SER GLN ASP ILE ILE THR VAL GLY GLY ILE THR VAL SEQRES 9 B 340 THR GLN MET PHE GLY GLU VAL THR GLU MET PRO ALA LEU SEQRES 10 B 340 PRO PHE MET LEU ALA GLU PHE ASP GLY VAL VAL GLY MET SEQRES 11 B 340 GLY PHE ILE GLU GLN ALA ILE GLY ARG VAL THR PRO ILE SEQRES 12 B 340 PHE ASP ASN ILE ILE SER GLN GLY VAL LEU LYS GLU ASP SEQRES 13 B 340 VAL PHE SER PHE TYR TYR ASN ARG ASP SER GLU ASN SER SEQRES 14 B 340 GLN SER LEU GLY GLY GLN ILE VAL LEU GLY GLY SER ASP SEQRES 15 B 340 PRO GLN HIS TYR GLU GLY ASN PHE HIS TYR ILE ASN LEU SEQRES 16 B 340 ILE LYS THR GLY VAL TRP GLN ILE GLN MET LYS GLY VAL SEQRES 17 B 340 SER VAL GLY SER SER THR LEU LEU CYS GLU ASP GLY CYS SEQRES 18 B 340 LEU ALA LEU VAL ASP THR GLY ALA SER TYR ILE SER GLY SEQRES 19 B 340 SER THR SER SER ILE GLU LYS LEU MET GLU ALA LEU GLY SEQRES 20 B 340 ALA LYS LYS ARG LEU PHE ASP TYR VAL VAL LYS CYS ASN SEQRES 21 B 340 GLU GLY PRO THR LEU PRO ASP ILE SER PHE HIS LEU GLY SEQRES 22 B 340 GLY LYS GLU TYR THR LEU THR SER ALA ASP TYR VAL PHE SEQRES 23 B 340 GLN GLU SER TYR SER SER LYS LYS LEU CYS THR LEU ALA SEQRES 24 B 340 ILE HIS ALA MET ASP ILE PRO PRO PRO THR GLY PRO THR SEQRES 25 B 340 TRP ALA LEU GLY ALA THR PHE ILE ARG LYS PHE TYR THR SEQRES 26 B 340 GLU PHE ASP ARG ARG ASN ASN ARG ILE GLY PHE ALA LEU SEQRES 27 B 340 ALA ARG MODRES 4Q1N ASN B 67 ASN GLYCOSYLATION SITE MODRES 4Q1N ASN A 67 ASN GLYCOSYLATION SITE HET DMS A 401 4 HET NAG A 402 14 HET PO4 A 403 5 HET 2Y9 A 404 34 HET DMS B 401 4 HET DMS B 402 4 HET NAG B 403 14 HET 2Y9 B 404 34 HETNAM DMS DIMETHYL SULFOXIDE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM PO4 PHOSPHATE ION HETNAM 2Y9 (3S,4R,5R)-N-CYCLOPROPYL-N'-[(2R)-1-ETHOXY-4- HETNAM 2 2Y9 METHYLPENTAN-2-YL]-4-HYDROXY-N-[5-(PROPAN-2-YL) HETNAM 3 2Y9 PYRIDIN-2-YL]PIPERIDINE-3,5-DICARBOXAMIDE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 DMS 3(C2 H6 O S) FORMUL 4 NAG 2(C8 H15 N O6) FORMUL 5 PO4 O4 P 3- FORMUL 6 2Y9 2(C26 H42 N4 O4) FORMUL 11 HOH *415(H2 O) HELIX 1 1 TYR A 47B TYR A 52 1 6 HELIX 2 2 ASP A 57 SER A 61 5 5 HELIX 3 3 PRO A 108 MET A 113 1 6 HELIX 4 4 PHE A 125 VAL A 133 5 9 HELIX 5 5 PRO A 135 GLN A 143 1 9 HELIX 6 6 ASP A 171 GLN A 173 5 3 HELIX 7 7 SER A 224 GLY A 236 1 13 HELIX 8 8 ASN A 250 LEU A 255 5 6 HELIX 9 9 THR A 270 VAL A 275 1 6 HELIX 10 10 GLY A 302 LYS A 308 1 7 HELIX 11 11 THR B 48 HIS B 53 1 6 HELIX 12 12 ASP B 57 SER B 61 5 5 HELIX 13 13 PRO B 108 MET B 113 1 6 HELIX 14 14 PHE B 125 VAL B 133 5 9 HELIX 15 15 PRO B 135 GLN B 143 1 9 HELIX 16 16 ASP B 171 GLN B 173 5 3 HELIX 17 17 SER B 224 GLY B 236 1 13 HELIX 18 18 ASN B 250 LEU B 255 5 6 HELIX 19 19 THR B 270 VAL B 275 1 6 HELIX 20 20 GLY B 302 LYS B 308 1 7 SHEET 1 A 9 LYS A 65 TYR A 75 0 SHEET 2 A 9 GLY A 78 VAL A 91 -1 O VAL A 80 N LEU A 73 SHEET 3 A 9 GLN A 13 ILE A 20 -1 N GLY A 19 O THR A 90 SHEET 4 A 9 SER A 2 TYR A 9 -1 N TYR A 9 O GLN A 13 SHEET 5 A 9 GLY A 163 LEU A 167 -1 O LEU A 167 N SER A 2 SHEET 6 A 9 VAL A 150 TYR A 155 -1 N TYR A 154 O GLN A 164 SHEET 7 A 9 PHE A 309 ASP A 314 -1 O PHE A 313 N PHE A 151 SHEET 8 A 9 ARG A 319 ALA A 325 -1 O GLY A 321 N GLU A 312 SHEET 9 A 9 TYR A 175 ASN A 183 -1 N ILE A 182 O ILE A 320 SHEET 1 B13 LYS A 65 TYR A 75 0 SHEET 2 B13 GLY A 78 VAL A 91 -1 O VAL A 80 N LEU A 73 SHEET 3 B13 ILE A 94 GLU A 106 -1 O GLN A 99 N ASP A 87 SHEET 4 B13 VAL A 38 PRO A 41 1 N VAL A 38 O GLY A 102 SHEET 5 B13 GLY A 119 GLY A 122 -1 O VAL A 120 N TRP A 39 SHEET 6 B13 GLN A 25 ASP A 32 1 N VAL A 30 O VAL A 121 SHEET 7 B13 GLN A 13 ILE A 20 -1 N GLY A 16 O VAL A 29 SHEET 8 B13 SER A 2 TYR A 9 -1 N TYR A 9 O GLN A 13 SHEET 9 B13 GLY A 163 LEU A 167 -1 O LEU A 167 N SER A 2 SHEET 10 B13 VAL A 150 TYR A 155 -1 N TYR A 154 O GLN A 164 SHEET 11 B13 PHE A 309 ASP A 314 -1 O PHE A 313 N PHE A 151 SHEET 12 B13 ARG A 319 ALA A 325 -1 O GLY A 321 N GLU A 312 SHEET 13 B13 TYR A 175 ASN A 183 -1 N ILE A 182 O ILE A 320 SHEET 1 C 5 GLN A 191 MET A 194 0 SHEET 2 C 5 CYS A 210 VAL A 214 -1 O CYS A 210 N MET A 194 SHEET 3 C 5 TRP A 299 LEU A 301 1 O LEU A 301 N LEU A 213 SHEET 4 C 5 ILE A 221 GLY A 223 -1 N SER A 222 O ALA A 300 SHEET 5 C 5 ILE A 286 ALA A 288 1 O HIS A 287 N ILE A 221 SHEET 1 D 4 SER A 202 LEU A 205 0 SHEET 2 D 4 GLY A 196 VAL A 199 -1 N VAL A 197 O LEU A 205 SHEET 3 D 4 ILE A 258 LEU A 262 -1 O HIS A 261 N GLY A 196 SHEET 4 D 4 LYS A 265 LEU A 269 -1 O LEU A 269 N ILE A 258 SHEET 1 E 3 LYS A 238 LYS A 239 0 SHEET 2 E 3 TYR A 245 LYS A 248 -1 O VAL A 246 N LYS A 238 SHEET 3 E 3 LEU A 281D THR A 283 -1 O CYS A 282 N VAL A 247 SHEET 1 F 9 LYS B 65 TYR B 75 0 SHEET 2 F 9 GLY B 78 VAL B 91 -1 O VAL B 80 N LEU B 73 SHEET 3 F 9 GLN B 13 ILE B 20 -1 N GLY B 19 O THR B 90 SHEET 4 F 9 SER B 2 TYR B 9 -1 N TYR B 9 O GLN B 13 SHEET 5 F 9 GLY B 163 LEU B 167 -1 O LEU B 167 N SER B 2 SHEET 6 F 9 VAL B 150 TYR B 155 -1 N TYR B 154 O GLN B 164 SHEET 7 F 9 PHE B 309 ASP B 314 -1 O PHE B 313 N PHE B 151 SHEET 8 F 9 ARG B 319 ALA B 325 -1 O GLY B 321 N GLU B 312 SHEET 9 F 9 TYR B 175 ASN B 183 -1 N GLU B 176 O LEU B 324 SHEET 1 G13 LYS B 65 TYR B 75 0 SHEET 2 G13 GLY B 78 VAL B 91 -1 O VAL B 80 N LEU B 73 SHEET 3 G13 ILE B 94 GLU B 106 -1 O GLN B 99 N ASP B 87 SHEET 4 G13 VAL B 38 PRO B 41 1 N VAL B 38 O GLY B 102 SHEET 5 G13 GLY B 119 GLY B 122 -1 O VAL B 120 N TRP B 39 SHEET 6 G13 GLN B 25 ASP B 32 1 N VAL B 30 O VAL B 121 SHEET 7 G13 GLN B 13 ILE B 20 -1 N GLY B 16 O VAL B 29 SHEET 8 G13 SER B 2 TYR B 9 -1 N TYR B 9 O GLN B 13 SHEET 9 G13 GLY B 163 LEU B 167 -1 O LEU B 167 N SER B 2 SHEET 10 G13 VAL B 150 TYR B 155 -1 N TYR B 154 O GLN B 164 SHEET 11 G13 PHE B 309 ASP B 314 -1 O PHE B 313 N PHE B 151 SHEET 12 G13 ARG B 319 ALA B 325 -1 O GLY B 321 N GLU B 312 SHEET 13 G13 TYR B 175 ASN B 183 -1 N GLU B 176 O LEU B 324 SHEET 1 H 5 GLN B 191 MET B 194 0 SHEET 2 H 5 CYS B 210 VAL B 214 -1 O CYS B 210 N MET B 194 SHEET 3 H 5 TRP B 299 LEU B 301 1 O LEU B 301 N LEU B 213 SHEET 4 H 5 ILE B 221 GLY B 223 -1 N SER B 222 O ALA B 300 SHEET 5 H 5 ILE B 286 ALA B 288 1 O HIS B 287 N ILE B 221 SHEET 1 I 4 SER B 202 LEU B 205 0 SHEET 2 I 4 GLY B 196 VAL B 199 -1 N VAL B 197 O LEU B 205 SHEET 3 I 4 ILE B 258 LEU B 262 -1 O HIS B 261 N GLY B 196 SHEET 4 I 4 LYS B 265 LEU B 269 -1 O LEU B 269 N ILE B 258 SHEET 1 J 3 LYS B 238 LYS B 239 0 SHEET 2 J 3 TYR B 245 LYS B 248 -1 O VAL B 246 N LYS B 238 SHEET 3 J 3 LEU B 281D THR B 283 -1 O CYS B 282 N VAL B 247 SSBOND 1 CYS A 45 CYS A 50 1555 1555 2.01 SSBOND 2 CYS A 206 CYS A 210 1555 1555 2.04 SSBOND 3 CYS A 249 CYS A 282 1555 1555 2.05 SSBOND 4 CYS B 45 CYS B 50 1555 1555 2.02 SSBOND 5 CYS B 206 CYS B 210 1555 1555 2.56 SSBOND 6 CYS B 249 CYS B 282 1555 1555 2.06 LINK ND2 ASN A 67 C1 NAG A 402 1555 1555 1.43 LINK ND2 ASN B 67 C1 NAG B 403 1555 1555 1.43 CISPEP 1 THR A 22 PRO A 23 0 -4.04 CISPEP 2 LEU A 110 PRO A 111 0 11.49 CISPEP 3 PRO A 293 PRO A 294 0 4.02 CISPEP 4 GLY A 296 PRO A 297 0 -1.48 CISPEP 5 THR B 22 PRO B 23 0 -4.41 CISPEP 6 LEU B 110 PRO B 111 0 10.22 CISPEP 7 PRO B 293 PRO B 294 0 4.99 CISPEP 8 GLY B 296 PRO B 297 0 -2.42 CRYST1 140.854 140.854 140.854 90.00 90.00 90.00 P 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007100 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007100 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007100 0.00000 CONECT 394 449 CONECT 449 394 CONECT 590 5231 CONECT 1644 1671 CONECT 1671 1644 CONECT 1954 2244 CONECT 2244 1954 CONECT 3001 3056 CONECT 3056 3001 CONECT 3197 5292 CONECT 4260 4287 CONECT 4287 4260 CONECT 4570 4860 CONECT 4860 4570 CONECT 5227 5228 5229 5230 CONECT 5228 5227 CONECT 5229 5227 CONECT 5230 5227 CONECT 5231 590 5232 5242 CONECT 5232 5231 5233 5239 CONECT 5233 5232 5234 5240 CONECT 5234 5233 5235 5241 CONECT 5235 5234 5236 5242 CONECT 5236 5235 5243 CONECT 5237 5238 5239 5244 CONECT 5238 5237 CONECT 5239 5232 5237 CONECT 5240 5233 CONECT 5241 5234 CONECT 5242 5231 5235 CONECT 5243 5236 CONECT 5244 5237 CONECT 5245 5246 5247 5248 5249 CONECT 5246 5245 CONECT 5247 5245 CONECT 5248 5245 CONECT 5249 5245 CONECT 5250 5251 5255 CONECT 5251 5250 5252 5256 CONECT 5252 5251 5253 5262 CONECT 5253 5252 5254 5257 CONECT 5254 5253 5255 CONECT 5255 5250 5254 CONECT 5256 5251 5259 5260 CONECT 5257 5253 5258 5261 CONECT 5258 5257 CONECT 5259 5256 5263 5264 CONECT 5260 5256 CONECT 5261 5257 5275 CONECT 5262 5252 CONECT 5263 5259 5265 5266 CONECT 5264 5259 5267 5271 CONECT 5265 5263 5266 CONECT 5266 5263 5265 CONECT 5267 5264 5268 CONECT 5268 5267 5269 CONECT 5269 5268 5270 5272 CONECT 5270 5269 5271 CONECT 5271 5264 5270 CONECT 5272 5269 5273 5274 CONECT 5273 5272 CONECT 5274 5272 CONECT 5275 5261 5276 5280 CONECT 5276 5275 5277 CONECT 5277 5276 5278 5279 CONECT 5278 5277 CONECT 5279 5277 CONECT 5280 5275 5281 CONECT 5281 5280 5282 CONECT 5282 5281 5283 CONECT 5283 5282 CONECT 5284 5285 5286 5287 CONECT 5285 5284 CONECT 5286 5284 CONECT 5287 5284 CONECT 5288 5289 5290 5291 CONECT 5289 5288 CONECT 5290 5288 CONECT 5291 5288 CONECT 5292 3197 5293 5303 CONECT 5293 5292 5294 5300 CONECT 5294 5293 5295 5301 CONECT 5295 5294 5296 5302 CONECT 5296 5295 5297 5303 CONECT 5297 5296 5304 CONECT 5298 5299 5300 5305 CONECT 5299 5298 CONECT 5300 5293 5298 CONECT 5301 5294 CONECT 5302 5295 CONECT 5303 5292 5296 CONECT 5304 5297 CONECT 5305 5298 CONECT 5306 5307 5311 CONECT 5307 5306 5308 5312 CONECT 5308 5307 5309 5318 CONECT 5309 5308 5310 5313 CONECT 5310 5309 5311 CONECT 5311 5306 5310 CONECT 5312 5307 5315 5316 CONECT 5313 5309 5314 5317 CONECT 5314 5313 CONECT 5315 5312 5319 5320 CONECT 5316 5312 CONECT 5317 5313 5331 CONECT 5318 5308 CONECT 5319 5315 5321 5322 CONECT 5320 5315 5323 5327 CONECT 5321 5319 5322 CONECT 5322 5319 5321 CONECT 5323 5320 5324 CONECT 5324 5323 5325 CONECT 5325 5324 5326 5328 CONECT 5326 5325 5327 CONECT 5327 5320 5326 CONECT 5328 5325 5329 5330 CONECT 5329 5328 CONECT 5330 5328 CONECT 5331 5317 5332 5336 CONECT 5332 5331 5333 CONECT 5333 5332 5334 5335 CONECT 5334 5333 CONECT 5335 5333 CONECT 5336 5331 5337 CONECT 5337 5336 5338 CONECT 5338 5337 5339 CONECT 5339 5338 MASTER 359 0 8 20 68 0 0 6 5712 2 127 54 END