HEADER ONCOGENE PROTEIN 25-SEP-91 4Q21 TITLE MOLECULAR SWITCH FOR SIGNAL TRANSDUCTION: STRUCTURAL DIFFERENCES TITLE 2 BETWEEN ACTIVE AND INACTIVE FORMS OF PROTOONCOGENIC RAS PROTEINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-H-RAS P21 PROTEIN CATALYTIC DOMAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ONCOGENE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.-H.KIM REVDAT 5 28-FEB-24 4Q21 1 REMARK LINK REVDAT 4 29-NOV-17 4Q21 1 HELIX REVDAT 3 24-FEB-09 4Q21 1 VERSN REVDAT 2 01-APR-03 4Q21 1 JRNL REVDAT 1 15-JUL-92 4Q21 0 JRNL AUTH M.V.MILBURN,L.TONG,A.M.DEVOS,A.BRUNGER,Z.YAMAIZUMI, JRNL AUTH 2 S.NISHIMURA,S.H.KIM JRNL TITL MOLECULAR SWITCH FOR SIGNAL TRANSDUCTION: STRUCTURAL JRNL TITL 2 DIFFERENCES BETWEEN ACTIVE AND INACTIVE FORMS OF JRNL TITL 3 PROTOONCOGENIC RAS PROTEINS. JRNL REF SCIENCE V. 247 939 1990 JRNL REFN ISSN 0036-8075 JRNL PMID 2406906 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.G.PRIVE,M.V.MILBURN,L.TONG,A.M.DEVOS,Z.YAMAIZUMI, REMARK 1 AUTH 2 S.NISHIMURA,S.-H.KIM REMARK 1 TITL X-RAY CRYSTAL STRUCTURES OF TRANSFORMING P21 RAS MUTANTS REMARK 1 TITL 2 SUGGEST A TRANSITION-STATE STABILIZATION MECHANISM FOR GTP REMARK 1 TITL 3 HYDROLYSIS REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 89 3649 1992 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.T.BRUNGER,M.V.MILBURN,L.TONG,A.M.DEVOS,J.JANCARIK, REMARK 1 AUTH 2 Z.YAMAIZUMI,S.NISHIMURA,E.OHTSUKA,S.-H.KIM REMARK 1 TITL CRYSTAL STRUCTURE OF AN ACTIVE FORM OF RAS PROTEIN, A REMARK 1 TITL 2 COMPLEX OF A GTP ANALOG AND THE HRAS P21 CATALYTIC DOMAIN REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 87 4849 1990 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 3 REMARK 1 AUTH L.TONG,M.V.MILBURN,A.M.DEVOS,S.-H.KIM REMARK 1 TITL STRUCTURE OF RAS PROTEIN REMARK 1 REF SCIENCE V. 245 244 1989 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 4 REMARK 1 AUTH A.M.DEVOS,L.TONG,M.V.MILBURN,P.M.MATIAS,J.JANCARIK, REMARK 1 AUTH 2 S.NOGUCHI,S.NISHIMURA,K.MIURA,E.OHTSUKA,S.-H.KIM REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF AN ONCOGENE PROTEIN. REMARK 1 TITL 2 CATALYTIC DOMAIN OF HUMAN C-H-RAS P21 REMARK 1 REF SCIENCE V. 239 888 1988 REMARK 1 REFN ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1340 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 78 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.019 REMARK 3 BOND ANGLES (DEGREES) : 2.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Q21 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000179401. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.15000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.15000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 20.68500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.15000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.15000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.68500 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 48.15000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 48.15000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 20.68500 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 48.15000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 48.15000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 20.68500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 170 REMARK 465 LEU A 171 REMARK 465 ASN A 172 REMARK 465 PRO A 173 REMARK 465 PRO A 174 REMARK 465 ASP A 175 REMARK 465 GLU A 176 REMARK 465 SER A 177 REMARK 465 GLY A 178 REMARK 465 PRO A 179 REMARK 465 GLY A 180 REMARK 465 CYS A 181 REMARK 465 MET A 182 REMARK 465 SER A 183 REMARK 465 CYS A 184 REMARK 465 LYS A 185 REMARK 465 CYS A 186 REMARK 465 VAL A 187 REMARK 465 LEU A 188 REMARK 465 SER A 189 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 169 CA C O CB CG CD NE REMARK 470 ARG A 169 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN A 165 O HOH A 455 3655 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 31 CD GLU A 31 OE2 0.087 REMARK 500 GLU A 49 CD GLU A 49 OE2 0.075 REMARK 500 GLU A 62 CD GLU A 62 OE2 0.072 REMARK 500 GLU A 63 CD GLU A 63 OE2 0.067 REMARK 500 GLU A 91 CD GLU A 91 OE1 0.069 REMARK 500 GLU A 98 CD GLU A 98 OE2 0.083 REMARK 500 GLU A 126 CD GLU A 126 OE2 0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 30 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 33 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 33 CB - CG - OD2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ASP A 38 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 38 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP A 47 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP A 69 CB - CG - OD1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 97 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 105 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 105 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ASP A 107 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP A 108 CB - CG - OD1 ANGL. DEV. = -6.6 DEGREES REMARK 500 ASP A 108 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 132 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 TYR A 137 CB - CG - CD1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 161 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 31 2.63 83.81 REMARK 500 GLU A 62 -80.29 91.78 REMARK 500 LYS A 117 31.70 75.59 REMARK 500 CYS A 118 2.29 -66.48 REMARK 500 ALA A 122 34.15 -58.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 273 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GDP A 274 O3B 83.9 REMARK 620 3 HOH A 401 O 166.6 97.8 REMARK 620 4 HOH A 403 O 70.6 103.1 96.1 REMARK 620 5 HOH A 404 O 73.7 156.4 105.7 76.7 REMARK 620 6 HOH A 405 O 85.9 86.2 107.5 153.3 84.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 273 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 274 DBREF 4Q21 A 1 189 UNP P01112 RASH_HUMAN 1 189 SEQRES 1 A 189 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY GLY SEQRES 2 A 189 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 A 189 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 A 189 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 A 189 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 A 189 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 A 189 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 A 189 ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 A 189 ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 A 189 CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN ALA SEQRES 11 A 189 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE GLU SEQRES 12 A 189 THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA PHE SEQRES 13 A 189 TYR THR LEU VAL ARG GLU ILE ARG GLN HIS LYS LEU ARG SEQRES 14 A 189 LYS LEU ASN PRO PRO ASP GLU SER GLY PRO GLY CYS MET SEQRES 15 A 189 SER CYS LYS CYS VAL LEU SER HET MG A 273 1 HET GDP A 274 28 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 2 MG MG 2+ FORMUL 3 GDP C10 H15 N5 O11 P2 FORMUL 4 HOH *78(H2 O) HELIX 1 A1 GLY A 15 ASN A 26 1 12 HELIX 2 A2 ASP A 69 GLY A 75 1 7 HELIX 3 A3 THR A 87 LYS A 104 1 18 HELIX 4 A4 GLU A 126 TYR A 137 1 12 SHEET 1 S1 6 ASP A 38 ILE A 46 0 SHEET 2 S1 6 GLU A 49 ASP A 57 -1 N LYS A 42 O LEU A 53 SHEET 3 S1 6 THR A 2 VAL A 9 1 O LEU A 6 N LEU A 56 SHEET 4 S1 6 GLY A 77 ILE A 84 1 O LEU A 79 N VAL A 9 SHEET 5 S1 6 PRO A 110 LYS A 117 1 O VAL A 112 N CYS A 80 SHEET 6 S1 6 PRO A 140 THR A 144 1 O ILE A 142 N GLY A 115 LINK OG SER A 17 MG MG A 273 1555 1555 2.31 LINK MG MG A 273 O3B GDP A 274 1555 1555 1.95 LINK MG MG A 273 O HOH A 401 1555 1555 2.09 LINK MG MG A 273 O HOH A 403 1555 1555 1.93 LINK MG MG A 273 O HOH A 404 1555 1555 2.14 LINK MG MG A 273 O HOH A 405 1555 1555 1.92 SITE 1 AC1 6 SER A 17 GDP A 274 HOH A 401 HOH A 403 SITE 2 AC1 6 HOH A 404 HOH A 405 SITE 1 AC2 22 GLY A 12 GLY A 13 GLY A 15 LYS A 16 SITE 2 AC2 22 SER A 17 ALA A 18 PHE A 28 ASP A 30 SITE 3 AC2 22 ASN A 116 LYS A 117 ASP A 119 LEU A 120 SITE 4 AC2 22 SER A 145 ALA A 146 LYS A 147 MG A 273 SITE 5 AC2 22 HOH A 401 HOH A 402 HOH A 403 HOH A 405 SITE 6 AC2 22 HOH A 414 HOH A 443 CRYST1 96.300 96.300 41.370 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010384 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010384 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024172 0.00000