HEADER TRANSFERASE 05-APR-14 4Q23 TITLE THE ROLE OF THREONINE 201 AND TYROSINE 204 IN THE HUMAN FARNESYL TITLE 2 PYROPHOSPHATE SYNTHASE CATALYTIC MECHANISM AND THE MODE OF INHIBITION TITLE 3 BY THE NITROGEN-CONTAINING BISPHOSPHONATES COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 67-419; COMPND 5 SYNONYM: FPP SYNTHASE, FPS, (2E,6E)-FARNESYL DIPHOSPHATE SYNTHASE, COMPND 6 DIMETHYLALLYLTRANSTRANSFERASE, FARNESYL DIPHOSPHATE SYNTHASE, COMPND 7 GERANYLTRANSTRANSFERASE; COMPND 8 EC: 2.5.1.10, 2.5.1.1; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FDPS, FPS, KIAA1293; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 11 DERIVATIVE KEYWDS ISOPRENE BIOSYNTHESIS, LIPID SYNTHESIS, STEROID BIOSYNTHESIS, KEYWDS 2 TRANSFERASE, ISOPRENOID PATHWAY, CHOLESTEROL SYNTHESIS, KEYWDS 3 BISPHOSPHONATES, ALPHA HELICAL PRENYLTRANSFERASE, ISOPENTYL KEYWDS 4 PYROPHOSPHATE, DIMETHYLALLYL PYROPHOSPAHTE EXPDTA X-RAY DIFFRACTION AUTHOR M.K.TSOUMPRA,J.R.C.MUNIZ,B.L.BARNETT,A.A.KWAASI,E.S.PILKA, AUTHOR 2 K.L.KAVANAGH,A.EVDOKIMOV,R.L.WALTER,F.H.EBETINO,F.VON DELFT, AUTHOR 3 U.OPPERMANN,R.G.G.RUSSELL,J.E.DUNFORD REVDAT 3 20-SEP-23 4Q23 1 REMARK SEQADV LINK REVDAT 2 31-JAN-18 4Q23 1 AUTHOR JRNL HETSYN REVDAT 1 18-MAR-15 4Q23 0 JRNL AUTH M.K.TSOUMPRA,J.R.C.MUNIZ,B.L.BARNETT,A.A.KWAASI,E.S.PILKA, JRNL AUTH 2 K.L.KAVANAGH,A.EVDOKIMOV,R.L.WALTER,F.H.EBETINO,F.VON DELFT, JRNL AUTH 3 U.OPPERMANN,R.G.G.RUSSELL,J.E.DUNFORD JRNL TITL THE ROLE OF THREONINE 201 AND TYROSINE 204 IN THE HUMAN JRNL TITL 2 FARNESYL PYROPHOSPHATE SYNTHASE CATALYTIC MECHANISM AND THE JRNL TITL 3 MODE OF INHIBITION BY THE NITROGEN-CONTAINING JRNL TITL 4 BISPHOSPHONATES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 29838 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1512 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.05 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2908 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2336 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2761 REMARK 3 BIN R VALUE (WORKING SET) : 0.2315 REMARK 3 BIN FREE R VALUE : 0.2728 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.06 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 147 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2642 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 121 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.43450 REMARK 3 B22 (A**2) : 5.43450 REMARK 3 B33 (A**2) : -10.86900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.288 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2760 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3758 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1257 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 68 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 401 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2760 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 357 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3493 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.93 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.78 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.89 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|9 - 34} REMARK 3 ORIGIN FOR THE GROUP (A): -0.8730 29.0744 -25.9506 REMARK 3 T TENSOR REMARK 3 T11: -0.2773 T22: 0.0833 REMARK 3 T33: 0.2114 T12: -0.1518 REMARK 3 T13: 0.1393 T23: 0.0585 REMARK 3 L TENSOR REMARK 3 L11: 0.3985 L22: 3.3141 REMARK 3 L33: 4.3325 L12: -1.5641 REMARK 3 L13: -1.1312 L23: -1.5366 REMARK 3 S TENSOR REMARK 3 S11: 0.1045 S12: 0.2020 S13: 0.2582 REMARK 3 S21: -0.1763 S22: -0.1367 S23: -0.1910 REMARK 3 S31: -0.2706 S32: 0.3437 S33: 0.0322 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|35 - 55} REMARK 3 ORIGIN FOR THE GROUP (A): -15.9259 27.9344 -31.1703 REMARK 3 T TENSOR REMARK 3 T11: -0.1390 T22: -0.0077 REMARK 3 T33: 0.1104 T12: -0.0484 REMARK 3 T13: 0.0926 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.6539 L22: 0.3922 REMARK 3 L33: 3.5647 L12: -2.7107 REMARK 3 L13: -1.8593 L23: 0.3210 REMARK 3 S TENSOR REMARK 3 S11: -0.0561 S12: 0.4347 S13: -0.1810 REMARK 3 S21: -0.1450 S22: -0.1724 S23: -0.2562 REMARK 3 S31: -0.0316 S32: 0.2596 S33: 0.2286 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|56 - 73} REMARK 3 ORIGIN FOR THE GROUP (A): 3.8472 27.7589 -15.0814 REMARK 3 T TENSOR REMARK 3 T11: -0.2921 T22: -0.0747 REMARK 3 T33: 0.2253 T12: -0.0827 REMARK 3 T13: -0.0165 T23: -0.0831 REMARK 3 L TENSOR REMARK 3 L11: 2.7218 L22: 0.1888 REMARK 3 L33: 5.5334 L12: 2.2449 REMARK 3 L13: 2.3130 L23: -1.8843 REMARK 3 S TENSOR REMARK 3 S11: -0.0444 S12: 0.1895 S13: 0.1425 REMARK 3 S21: -0.0639 S22: 0.1460 S23: -0.1559 REMARK 3 S31: -0.0883 S32: 0.5442 S33: -0.1016 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|74 - 83} REMARK 3 ORIGIN FOR THE GROUP (A): 11.5562 18.9292 -22.5258 REMARK 3 T TENSOR REMARK 3 T11: -0.2437 T22: 0.2936 REMARK 3 T33: 0.3040 T12: 0.0037 REMARK 3 T13: 0.0456 T23: -0.1502 REMARK 3 L TENSOR REMARK 3 L11: 2.1279 L22: 0.6188 REMARK 3 L33: 0.1188 L12: -0.3929 REMARK 3 L13: -1.0433 L23: 2.2018 REMARK 3 S TENSOR REMARK 3 S11: 0.0098 S12: 0.0228 S13: 0.0236 REMARK 3 S21: -0.0023 S22: -0.0328 S23: -0.0425 REMARK 3 S31: 0.0437 S32: 0.0523 S33: 0.0230 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|84 - 181} REMARK 3 ORIGIN FOR THE GROUP (A): -13.9317 24.7999 -16.7155 REMARK 3 T TENSOR REMARK 3 T11: -0.1615 T22: -0.1554 REMARK 3 T33: 0.0944 T12: -0.0194 REMARK 3 T13: -0.0014 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 2.5070 L22: 1.1876 REMARK 3 L33: 1.3468 L12: -0.1828 REMARK 3 L13: 0.6334 L23: 0.3426 REMARK 3 S TENSOR REMARK 3 S11: 0.0060 S12: 0.1546 S13: -0.1166 REMARK 3 S21: -0.0613 S22: 0.1143 S23: -0.1239 REMARK 3 S31: -0.0098 S32: 0.1562 S33: -0.1203 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|182 - 205} REMARK 3 ORIGIN FOR THE GROUP (A): -17.0032 29.1886 2.2435 REMARK 3 T TENSOR REMARK 3 T11: -0.1785 T22: -0.2266 REMARK 3 T33: 0.2433 T12: -0.0051 REMARK 3 T13: -0.1520 T23: 0.0415 REMARK 3 L TENSOR REMARK 3 L11: 2.6001 L22: 8.1679 REMARK 3 L33: 2.8000 L12: -1.2906 REMARK 3 L13: 2.7725 L23: 2.2633 REMARK 3 S TENSOR REMARK 3 S11: 0.1238 S12: -0.2565 S13: -0.3151 REMARK 3 S21: 0.4850 S22: 0.0424 S23: -0.5028 REMARK 3 S31: 0.1462 S32: -0.1831 S33: -0.1662 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {A|206 - 234} REMARK 3 ORIGIN FOR THE GROUP (A): 0.7820 19.7472 -4.8659 REMARK 3 T TENSOR REMARK 3 T11: -0.1799 T22: -0.0946 REMARK 3 T33: 0.2651 T12: 0.0045 REMARK 3 T13: -0.0907 T23: -0.0384 REMARK 3 L TENSOR REMARK 3 L11: 3.3187 L22: 3.3857 REMARK 3 L33: 4.8065 L12: -0.6109 REMARK 3 L13: -0.2603 L23: 2.0301 REMARK 3 S TENSOR REMARK 3 S11: 0.0737 S12: -0.0220 S13: -0.3565 REMARK 3 S21: 0.2128 S22: 0.0271 S23: -0.0584 REMARK 3 S31: 0.2938 S32: 0.2764 S33: -0.1009 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {A|235 - 273} REMARK 3 ORIGIN FOR THE GROUP (A): -14.4406 40.1496 -2.7291 REMARK 3 T TENSOR REMARK 3 T11: -0.1047 T22: -0.1651 REMARK 3 T33: 0.1117 T12: -0.0162 REMARK 3 T13: -0.0789 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 2.5259 L22: 1.7670 REMARK 3 L33: 1.9872 L12: -0.3669 REMARK 3 L13: 0.1387 L23: 0.1412 REMARK 3 S TENSOR REMARK 3 S11: -0.1095 S12: -0.2788 S13: 0.4821 REMARK 3 S21: 0.1920 S22: 0.1126 S23: -0.3368 REMARK 3 S31: -0.2605 S32: 0.1031 S33: -0.0032 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: {A|274 - 305} REMARK 3 ORIGIN FOR THE GROUP (A): -25.7915 46.2915 6.2031 REMARK 3 T TENSOR REMARK 3 T11: 0.0073 T22: -0.0053 REMARK 3 T33: 0.1031 T12: 0.0854 REMARK 3 T13: -0.0145 T23: -0.1065 REMARK 3 L TENSOR REMARK 3 L11: 1.7373 L22: 1.3707 REMARK 3 L33: 4.0085 L12: 0.2340 REMARK 3 L13: -0.1798 L23: -0.9790 REMARK 3 S TENSOR REMARK 3 S11: -0.0376 S12: -0.5442 S13: 0.5207 REMARK 3 S21: 0.5442 S22: 0.2184 S23: 0.1262 REMARK 3 S31: -0.1697 S32: -0.1883 S33: -0.1807 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: {A|306 - 349} REMARK 3 ORIGIN FOR THE GROUP (A): 0.3930 35.4883 2.5736 REMARK 3 T TENSOR REMARK 3 T11: -0.1829 T22: -0.1098 REMARK 3 T33: 0.1641 T12: -0.0444 REMARK 3 T13: -0.0917 T23: -0.0554 REMARK 3 L TENSOR REMARK 3 L11: 4.6088 L22: 3.7409 REMARK 3 L33: 1.9197 L12: -2.1278 REMARK 3 L13: -0.1996 L23: 1.5903 REMARK 3 S TENSOR REMARK 3 S11: -0.0648 S12: -0.1419 S13: 0.4354 REMARK 3 S21: 0.0284 S22: -0.0592 S23: -0.1537 REMARK 3 S31: -0.2738 S32: 0.0281 S33: 0.1241 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Q23 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085506. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29838 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 25.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3CP6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NH4CL, 20% PEG 6000, 10% GLYCOL, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.80000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.68000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.68000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.90000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.68000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.68000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.70000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.68000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.68000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 16.90000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.68000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.68000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 50.70000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 33.80000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -107.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -33.80000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 ARG A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLY A 3 REMARK 465 ASP A 4 REMARK 465 GLN A 5 REMARK 465 ASN A 6 REMARK 465 SER A 7 REMARK 465 ASP A 8 REMARK 465 GLU A 30 REMARK 465 ASP A 31 REMARK 465 GLU A 32 REMARK 465 MET A 33 REMARK 465 LYS A 350 REMARK 465 ARG A 351 REMARK 465 ARG A 352 REMARK 465 LYS A 353 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 9 CG1 CG2 REMARK 470 GLN A 12 CG CD OE1 NE2 REMARK 470 GLU A 13 OE1 OE2 REMARK 470 GLN A 15 CG CD OE1 NE2 REMARK 470 ASP A 16 CG OD1 OD2 REMARK 470 GLN A 19 CG CD OE1 NE2 REMARK 470 ARG A 26 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 35 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 38 CG1 CG2 CD1 REMARK 470 GLU A 73 CG CD OE1 OE2 REMARK 470 GLU A 149 OE1 OE2 REMARK 470 GLN A 180 CG CD OE1 NE2 REMARK 470 ASP A 184 CG OD1 OD2 REMARK 470 ARG A 187 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 LYS A 223 CG CD CE NZ REMARK 470 GLU A 281 CG CD OE1 OE2 REMARK 470 LYS A 287 NZ REMARK 470 GLU A 296 CD OE1 OE2 REMARK 470 ARG A 300 CD NE CZ NH1 NH2 REMARK 470 ARG A 346 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 36 1.36 -66.91 REMARK 500 VAL A 124 -70.83 -100.05 REMARK 500 ALA A 178 57.99 -117.90 REMARK 500 ALA A 201 -51.82 -120.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 103 OD2 REMARK 620 2 ASP A 107 OD2 85.8 REMARK 620 3 RIS A 901 O15 88.5 76.7 REMARK 620 4 RIS A 901 O12 96.1 169.3 92.8 REMARK 620 5 HOH A1090 O 167.7 84.3 96.4 94.9 REMARK 620 6 HOH A1092 O 83.1 101.1 171.5 89.6 91.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 904 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 103 OD1 REMARK 620 2 ASP A 107 OD2 89.6 REMARK 620 3 RIS A 901 O15 94.3 82.2 REMARK 620 4 HOH A1094 O 172.2 93.9 93.1 REMARK 620 5 HOH A1095 O 87.6 98.4 178.0 85.0 REMARK 620 6 HOH A1096 O 89.9 173.6 91.5 87.4 87.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 903 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 243 OD2 REMARK 620 2 RIS A 901 O11 102.2 REMARK 620 3 RIS A 901 O16 96.5 95.9 REMARK 620 4 HOH A1088 O 89.4 87.6 172.3 REMARK 620 5 HOH A1089 O 157.7 98.0 90.5 82.2 REMARK 620 6 HOH A1093 O 81.5 174.7 87.4 88.6 77.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RIS A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 905 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KFA RELATED DB: PDB REMARK 900 RELATED ID: 4KPD RELATED DB: PDB REMARK 900 RELATED ID: 4KPJ RELATED DB: PDB REMARK 900 RELATED ID: 4KQS RELATED DB: PDB REMARK 900 RELATED ID: 4KQU RELATED DB: PDB REMARK 900 RELATED ID: 4KQ5 RELATED DB: PDB DBREF 4Q23 A 1 353 UNP P14324 FPPS_HUMAN 67 419 SEQADV 4Q23 MET A -21 UNP P14324 EXPRESSION TAG SEQADV 4Q23 GLY A -20 UNP P14324 EXPRESSION TAG SEQADV 4Q23 SER A -19 UNP P14324 EXPRESSION TAG SEQADV 4Q23 SER A -18 UNP P14324 EXPRESSION TAG SEQADV 4Q23 HIS A -17 UNP P14324 EXPRESSION TAG SEQADV 4Q23 HIS A -16 UNP P14324 EXPRESSION TAG SEQADV 4Q23 HIS A -15 UNP P14324 EXPRESSION TAG SEQADV 4Q23 HIS A -14 UNP P14324 EXPRESSION TAG SEQADV 4Q23 HIS A -13 UNP P14324 EXPRESSION TAG SEQADV 4Q23 HIS A -12 UNP P14324 EXPRESSION TAG SEQADV 4Q23 SER A -11 UNP P14324 EXPRESSION TAG SEQADV 4Q23 SER A -10 UNP P14324 EXPRESSION TAG SEQADV 4Q23 GLY A -9 UNP P14324 EXPRESSION TAG SEQADV 4Q23 ARG A -8 UNP P14324 EXPRESSION TAG SEQADV 4Q23 GLU A -7 UNP P14324 EXPRESSION TAG SEQADV 4Q23 ASN A -6 UNP P14324 EXPRESSION TAG SEQADV 4Q23 LEU A -5 UNP P14324 EXPRESSION TAG SEQADV 4Q23 TYR A -4 UNP P14324 EXPRESSION TAG SEQADV 4Q23 PHE A -3 UNP P14324 EXPRESSION TAG SEQADV 4Q23 GLN A -2 UNP P14324 EXPRESSION TAG SEQADV 4Q23 GLY A -1 UNP P14324 EXPRESSION TAG SEQADV 4Q23 HIS A 0 UNP P14324 EXPRESSION TAG SEQADV 4Q23 ALA A 201 UNP P14324 THR 267 ENGINEERED MUTATION SEQRES 1 A 375 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 375 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET ASN GLY ASP SEQRES 3 A 375 GLN ASN SER ASP VAL TYR ALA GLN GLU LYS GLN ASP PHE SEQRES 4 A 375 VAL GLN HIS PHE SER GLN ILE VAL ARG VAL LEU THR GLU SEQRES 5 A 375 ASP GLU MET GLY HIS PRO GLU ILE GLY ASP ALA ILE ALA SEQRES 6 A 375 ARG LEU LYS GLU VAL LEU GLU TYR ASN ALA ILE GLY GLY SEQRES 7 A 375 LYS TYR ASN ARG GLY LEU THR VAL VAL VAL ALA PHE ARG SEQRES 8 A 375 GLU LEU VAL GLU PRO ARG LYS GLN ASP ALA ASP SER LEU SEQRES 9 A 375 GLN ARG ALA TRP THR VAL GLY TRP CYS VAL GLU LEU LEU SEQRES 10 A 375 GLN ALA PHE PHE LEU VAL ALA ASP ASP ILE MET ASP SER SEQRES 11 A 375 SER LEU THR ARG ARG GLY GLN ILE CYS TRP TYR GLN LYS SEQRES 12 A 375 PRO GLY VAL GLY LEU ASP ALA ILE ASN ASP ALA ASN LEU SEQRES 13 A 375 LEU GLU ALA CYS ILE TYR ARG LEU LEU LYS LEU TYR CYS SEQRES 14 A 375 ARG GLU GLN PRO TYR TYR LEU ASN LEU ILE GLU LEU PHE SEQRES 15 A 375 LEU GLN SER SER TYR GLN THR GLU ILE GLY GLN THR LEU SEQRES 16 A 375 ASP LEU LEU THR ALA PRO GLN GLY ASN VAL ASP LEU VAL SEQRES 17 A 375 ARG PHE THR GLU LYS ARG TYR LYS SER ILE VAL LYS TYR SEQRES 18 A 375 LYS ALA ALA PHE TYR SER PHE TYR LEU PRO ILE ALA ALA SEQRES 19 A 375 ALA MET TYR MET ALA GLY ILE ASP GLY GLU LYS GLU HIS SEQRES 20 A 375 ALA ASN ALA LYS LYS ILE LEU LEU GLU MET GLY GLU PHE SEQRES 21 A 375 PHE GLN ILE GLN ASP ASP TYR LEU ASP LEU PHE GLY ASP SEQRES 22 A 375 PRO SER VAL THR GLY LYS ILE GLY THR ASP ILE GLN ASP SEQRES 23 A 375 ASN LYS CYS SER TRP LEU VAL VAL GLN CYS LEU GLN ARG SEQRES 24 A 375 ALA THR PRO GLU GLN TYR GLN ILE LEU LYS GLU ASN TYR SEQRES 25 A 375 GLY GLN LYS GLU ALA GLU LYS VAL ALA ARG VAL LYS ALA SEQRES 26 A 375 LEU TYR GLU GLU LEU ASP LEU PRO ALA VAL PHE LEU GLN SEQRES 27 A 375 TYR GLU GLU ASP SER TYR SER HIS ILE MET ALA LEU ILE SEQRES 28 A 375 GLU GLN TYR ALA ALA PRO LEU PRO PRO ALA VAL PHE LEU SEQRES 29 A 375 GLY LEU ALA ARG LYS ILE TYR LYS ARG ARG LYS HET RIS A 901 17 HET MG A 902 1 HET MG A 903 1 HET MG A 904 1 HET SO4 A 905 5 HETNAM RIS 1-HYDROXY-2-(3-PYRIDINYL)ETHYLIDENE BIS-PHOSPHONIC ACID HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETSYN RIS RISEDRONATE FORMUL 2 RIS C7 H11 N O7 P2 FORMUL 3 MG 3(MG 2+) FORMUL 6 SO4 O4 S 2- FORMUL 7 HOH *121(H2 O) HELIX 1 1 TYR A 10 HIS A 20 1 11 HELIX 2 2 HIS A 20 THR A 29 1 10 HELIX 3 3 HIS A 35 GLU A 37 5 3 HELIX 4 4 ILE A 38 ALA A 53 1 16 HELIX 5 5 TYR A 58 VAL A 72 1 15 HELIX 6 6 GLU A 73 GLN A 77 5 5 HELIX 7 7 ASP A 78 ASP A 107 1 30 HELIX 8 8 TRP A 118 LYS A 121 5 4 HELIX 9 9 VAL A 124 LEU A 126 5 3 HELIX 10 10 ASP A 127 ARG A 148 1 22 HELIX 11 11 TYR A 152 ALA A 178 1 27 HELIX 12 12 ASP A 184 PHE A 188 5 5 HELIX 13 13 THR A 189 ALA A 201 1 13 HELIX 14 14 ALA A 201 PHE A 206 1 6 HELIX 15 15 PHE A 206 ALA A 217 1 12 HELIX 16 16 GLY A 221 GLY A 250 1 30 HELIX 17 17 ASP A 251 GLY A 256 1 6 HELIX 18 18 SER A 268 GLN A 276 1 9 HELIX 19 19 THR A 279 TYR A 290 1 12 HELIX 20 20 GLU A 294 LEU A 308 1 15 HELIX 21 21 ASP A 309 ALA A 333 1 25 HELIX 22 22 PRO A 338 TYR A 349 1 12 SHEET 1 A 2 THR A 111 ARG A 112 0 SHEET 2 A 2 GLN A 115 ILE A 116 -1 O GLN A 115 N ARG A 112 LINK OD2 ASP A 103 MG MG A 902 1555 1555 2.03 LINK OD1 ASP A 103 MG MG A 904 1555 1555 1.95 LINK OD2 ASP A 107 MG MG A 902 1555 1555 2.26 LINK OD2 ASP A 107 MG MG A 904 1555 1555 2.03 LINK OD2 ASP A 243 MG MG A 903 1555 1555 2.11 LINK O15 RIS A 901 MG MG A 902 1555 1555 2.08 LINK O12 RIS A 901 MG MG A 902 1555 1555 2.24 LINK O11 RIS A 901 MG MG A 903 1555 1555 1.92 LINK O16 RIS A 901 MG MG A 903 1555 1555 1.97 LINK O15 RIS A 901 MG MG A 904 1555 1555 2.08 LINK MG MG A 902 O HOH A1090 1555 1555 2.08 LINK MG MG A 902 O HOH A1092 1555 1555 2.13 LINK MG MG A 903 O HOH A1088 1555 1555 2.13 LINK MG MG A 903 O HOH A1089 1555 1555 2.01 LINK MG MG A 903 O HOH A1093 1555 1555 2.13 LINK MG MG A 904 O HOH A1094 1555 1555 2.03 LINK MG MG A 904 O HOH A1095 1555 1555 2.17 LINK MG MG A 904 O HOH A1096 1555 1555 2.07 CISPEP 1 ALA A 334 PRO A 335 0 7.81 SITE 1 AC1 19 LEU A 100 ASP A 103 ASP A 107 ARG A 112 SITE 2 AC1 19 GLN A 171 LYS A 200 ASP A 243 LYS A 257 SITE 3 AC1 19 MG A 902 MG A 903 MG A 904 HOH A1001 SITE 4 AC1 19 HOH A1003 HOH A1088 HOH A1089 HOH A1092 SITE 5 AC1 19 HOH A1093 HOH A1094 HOH A1096 SITE 1 AC2 6 ASP A 103 ASP A 107 RIS A 901 MG A 904 SITE 2 AC2 6 HOH A1090 HOH A1092 SITE 1 AC3 5 ASP A 243 RIS A 901 HOH A1088 HOH A1089 SITE 2 AC3 5 HOH A1093 SITE 1 AC4 7 ASP A 103 ASP A 107 RIS A 901 MG A 902 SITE 2 AC4 7 HOH A1094 HOH A1095 HOH A1096 SITE 1 AC5 8 GLY A 56 LYS A 57 GLN A 96 ARG A 113 SITE 2 AC5 8 HOH A1016 HOH A1056 HOH A1099 HOH A1119 CRYST1 111.360 111.360 67.600 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008980 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008980 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014793 0.00000