HEADER TRANSFERASE 05-APR-14 4Q23
TITLE THE ROLE OF THREONINE 201 AND TYROSINE 204 IN THE HUMAN FARNESYL
TITLE 2 PYROPHOSPHATE SYNTHASE CATALYTIC MECHANISM AND THE MODE OF INHIBITION
TITLE 3 BY THE NITROGEN-CONTAINING BISPHOSPHONATES
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: FARNESYL PYROPHOSPHATE SYNTHASE;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: UNP RESIDUES 67-419;
COMPND 5 SYNONYM: FPP SYNTHASE, FPS, (2E,6E)-FARNESYL DIPHOSPHATE SYNTHASE,
COMPND 6 DIMETHYLALLYLTRANSTRANSFERASE, FARNESYL DIPHOSPHATE SYNTHASE,
COMPND 7 GERANYLTRANSTRANSFERASE;
COMPND 8 EC: 2.5.1.10, 2.5.1.1;
COMPND 9 ENGINEERED: YES;
COMPND 10 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: FDPS, FPS, KIAA1293;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 11 DERIVATIVE
KEYWDS ISOPRENE BIOSYNTHESIS, LIPID SYNTHESIS, STEROID BIOSYNTHESIS,
KEYWDS 2 TRANSFERASE, ISOPRENOID PATHWAY, CHOLESTEROL SYNTHESIS,
KEYWDS 3 BISPHOSPHONATES, ALPHA HELICAL PRENYLTRANSFERASE, ISOPENTYL
KEYWDS 4 PYROPHOSPHATE, DIMETHYLALLYL PYROPHOSPAHTE
EXPDTA X-RAY DIFFRACTION
AUTHOR M.K.TSOUMPRA,J.R.C.MUNIZ,B.L.BARNETT,A.A.KWAASI,E.S.PILKA,
AUTHOR 2 K.L.KAVANAGH,A.EVDOKIMOV,R.L.WALTER,F.H.EBETINO,F.VON DELFT,
AUTHOR 3 U.OPPERMANN,R.G.G.RUSSELL,J.E.DUNFORD
REVDAT 3 20-SEP-23 4Q23 1 REMARK SEQADV LINK
REVDAT 2 31-JAN-18 4Q23 1 AUTHOR JRNL HETSYN
REVDAT 1 18-MAR-15 4Q23 0
JRNL AUTH M.K.TSOUMPRA,J.R.C.MUNIZ,B.L.BARNETT,A.A.KWAASI,E.S.PILKA,
JRNL AUTH 2 K.L.KAVANAGH,A.EVDOKIMOV,R.L.WALTER,F.H.EBETINO,F.VON DELFT,
JRNL AUTH 3 U.OPPERMANN,R.G.G.RUSSELL,J.E.DUNFORD
JRNL TITL THE ROLE OF THREONINE 201 AND TYROSINE 204 IN THE HUMAN
JRNL TITL 2 FARNESYL PYROPHOSPHATE SYNTHASE CATALYTIC MECHANISM AND THE
JRNL TITL 3 MODE OF INHIBITION BY THE NITROGEN-CONTAINING
JRNL TITL 4 BISPHOSPHONATES
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. 1.98 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.8.0
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.02
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : NULL
REMARK 3 NUMBER OF REFLECTIONS : 29838
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.193
REMARK 3 R VALUE (WORKING SET) : 0.192
REMARK 3 FREE R VALUE : 0.223
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070
REMARK 3 FREE R VALUE TEST SET COUNT : 1512
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 15
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.05
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2908
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2336
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2761
REMARK 3 BIN R VALUE (WORKING SET) : 0.2315
REMARK 3 BIN FREE R VALUE : 0.2728
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.06
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 147
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2642
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 25
REMARK 3 SOLVENT ATOMS : 121
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 39.05
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.76
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 5.43450
REMARK 3 B22 (A**2) : 5.43450
REMARK 3 B33 (A**2) : -10.86900
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.288
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 2760 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 3758 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 1257 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 68 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 401 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 2760 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 5.000 ; SEMIHARMONIC
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 357 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 3493 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 0.93
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.78
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.89
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 10
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: {A|9 - 34}
REMARK 3 ORIGIN FOR THE GROUP (A): -0.8730 29.0744 -25.9506
REMARK 3 T TENSOR
REMARK 3 T11: -0.2773 T22: 0.0833
REMARK 3 T33: 0.2114 T12: -0.1518
REMARK 3 T13: 0.1393 T23: 0.0585
REMARK 3 L TENSOR
REMARK 3 L11: 0.3985 L22: 3.3141
REMARK 3 L33: 4.3325 L12: -1.5641
REMARK 3 L13: -1.1312 L23: -1.5366
REMARK 3 S TENSOR
REMARK 3 S11: 0.1045 S12: 0.2020 S13: 0.2582
REMARK 3 S21: -0.1763 S22: -0.1367 S23: -0.1910
REMARK 3 S31: -0.2706 S32: 0.3437 S33: 0.0322
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: {A|35 - 55}
REMARK 3 ORIGIN FOR THE GROUP (A): -15.9259 27.9344 -31.1703
REMARK 3 T TENSOR
REMARK 3 T11: -0.1390 T22: -0.0077
REMARK 3 T33: 0.1104 T12: -0.0484
REMARK 3 T13: 0.0926 T23: -0.0023
REMARK 3 L TENSOR
REMARK 3 L11: 0.6539 L22: 0.3922
REMARK 3 L33: 3.5647 L12: -2.7107
REMARK 3 L13: -1.8593 L23: 0.3210
REMARK 3 S TENSOR
REMARK 3 S11: -0.0561 S12: 0.4347 S13: -0.1810
REMARK 3 S21: -0.1450 S22: -0.1724 S23: -0.2562
REMARK 3 S31: -0.0316 S32: 0.2596 S33: 0.2286
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: {A|56 - 73}
REMARK 3 ORIGIN FOR THE GROUP (A): 3.8472 27.7589 -15.0814
REMARK 3 T TENSOR
REMARK 3 T11: -0.2921 T22: -0.0747
REMARK 3 T33: 0.2253 T12: -0.0827
REMARK 3 T13: -0.0165 T23: -0.0831
REMARK 3 L TENSOR
REMARK 3 L11: 2.7218 L22: 0.1888
REMARK 3 L33: 5.5334 L12: 2.2449
REMARK 3 L13: 2.3130 L23: -1.8843
REMARK 3 S TENSOR
REMARK 3 S11: -0.0444 S12: 0.1895 S13: 0.1425
REMARK 3 S21: -0.0639 S22: 0.1460 S23: -0.1559
REMARK 3 S31: -0.0883 S32: 0.5442 S33: -0.1016
REMARK 3
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: {A|74 - 83}
REMARK 3 ORIGIN FOR THE GROUP (A): 11.5562 18.9292 -22.5258
REMARK 3 T TENSOR
REMARK 3 T11: -0.2437 T22: 0.2936
REMARK 3 T33: 0.3040 T12: 0.0037
REMARK 3 T13: 0.0456 T23: -0.1502
REMARK 3 L TENSOR
REMARK 3 L11: 2.1279 L22: 0.6188
REMARK 3 L33: 0.1188 L12: -0.3929
REMARK 3 L13: -1.0433 L23: 2.2018
REMARK 3 S TENSOR
REMARK 3 S11: 0.0098 S12: 0.0228 S13: 0.0236
REMARK 3 S21: -0.0023 S22: -0.0328 S23: -0.0425
REMARK 3 S31: 0.0437 S32: 0.0523 S33: 0.0230
REMARK 3
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: {A|84 - 181}
REMARK 3 ORIGIN FOR THE GROUP (A): -13.9317 24.7999 -16.7155
REMARK 3 T TENSOR
REMARK 3 T11: -0.1615 T22: -0.1554
REMARK 3 T33: 0.0944 T12: -0.0194
REMARK 3 T13: -0.0014 T23: -0.0109
REMARK 3 L TENSOR
REMARK 3 L11: 2.5070 L22: 1.1876
REMARK 3 L33: 1.3468 L12: -0.1828
REMARK 3 L13: 0.6334 L23: 0.3426
REMARK 3 S TENSOR
REMARK 3 S11: 0.0060 S12: 0.1546 S13: -0.1166
REMARK 3 S21: -0.0613 S22: 0.1143 S23: -0.1239
REMARK 3 S31: -0.0098 S32: 0.1562 S33: -0.1203
REMARK 3
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: {A|182 - 205}
REMARK 3 ORIGIN FOR THE GROUP (A): -17.0032 29.1886 2.2435
REMARK 3 T TENSOR
REMARK 3 T11: -0.1785 T22: -0.2266
REMARK 3 T33: 0.2433 T12: -0.0051
REMARK 3 T13: -0.1520 T23: 0.0415
REMARK 3 L TENSOR
REMARK 3 L11: 2.6001 L22: 8.1679
REMARK 3 L33: 2.8000 L12: -1.2906
REMARK 3 L13: 2.7725 L23: 2.2633
REMARK 3 S TENSOR
REMARK 3 S11: 0.1238 S12: -0.2565 S13: -0.3151
REMARK 3 S21: 0.4850 S22: 0.0424 S23: -0.5028
REMARK 3 S31: 0.1462 S32: -0.1831 S33: -0.1662
REMARK 3
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: {A|206 - 234}
REMARK 3 ORIGIN FOR THE GROUP (A): 0.7820 19.7472 -4.8659
REMARK 3 T TENSOR
REMARK 3 T11: -0.1799 T22: -0.0946
REMARK 3 T33: 0.2651 T12: 0.0045
REMARK 3 T13: -0.0907 T23: -0.0384
REMARK 3 L TENSOR
REMARK 3 L11: 3.3187 L22: 3.3857
REMARK 3 L33: 4.8065 L12: -0.6109
REMARK 3 L13: -0.2603 L23: 2.0301
REMARK 3 S TENSOR
REMARK 3 S11: 0.0737 S12: -0.0220 S13: -0.3565
REMARK 3 S21: 0.2128 S22: 0.0271 S23: -0.0584
REMARK 3 S31: 0.2938 S32: 0.2764 S33: -0.1009
REMARK 3
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: {A|235 - 273}
REMARK 3 ORIGIN FOR THE GROUP (A): -14.4406 40.1496 -2.7291
REMARK 3 T TENSOR
REMARK 3 T11: -0.1047 T22: -0.1651
REMARK 3 T33: 0.1117 T12: -0.0162
REMARK 3 T13: -0.0789 T23: -0.0341
REMARK 3 L TENSOR
REMARK 3 L11: 2.5259 L22: 1.7670
REMARK 3 L33: 1.9872 L12: -0.3669
REMARK 3 L13: 0.1387 L23: 0.1412
REMARK 3 S TENSOR
REMARK 3 S11: -0.1095 S12: -0.2788 S13: 0.4821
REMARK 3 S21: 0.1920 S22: 0.1126 S23: -0.3368
REMARK 3 S31: -0.2605 S32: 0.1031 S33: -0.0032
REMARK 3
REMARK 3 TLS GROUP : 9
REMARK 3 SELECTION: {A|274 - 305}
REMARK 3 ORIGIN FOR THE GROUP (A): -25.7915 46.2915 6.2031
REMARK 3 T TENSOR
REMARK 3 T11: 0.0073 T22: -0.0053
REMARK 3 T33: 0.1031 T12: 0.0854
REMARK 3 T13: -0.0145 T23: -0.1065
REMARK 3 L TENSOR
REMARK 3 L11: 1.7373 L22: 1.3707
REMARK 3 L33: 4.0085 L12: 0.2340
REMARK 3 L13: -0.1798 L23: -0.9790
REMARK 3 S TENSOR
REMARK 3 S11: -0.0376 S12: -0.5442 S13: 0.5207
REMARK 3 S21: 0.5442 S22: 0.2184 S23: 0.1262
REMARK 3 S31: -0.1697 S32: -0.1883 S33: -0.1807
REMARK 3
REMARK 3 TLS GROUP : 10
REMARK 3 SELECTION: {A|306 - 349}
REMARK 3 ORIGIN FOR THE GROUP (A): 0.3930 35.4883 2.5736
REMARK 3 T TENSOR
REMARK 3 T11: -0.1829 T22: -0.1098
REMARK 3 T33: 0.1641 T12: -0.0444
REMARK 3 T13: -0.0917 T23: -0.0554
REMARK 3 L TENSOR
REMARK 3 L11: 4.6088 L22: 3.7409
REMARK 3 L33: 1.9197 L12: -2.1278
REMARK 3 L13: -0.1996 L23: 1.5903
REMARK 3 S TENSOR
REMARK 3 S11: -0.0648 S12: -0.1419 S13: 0.4354
REMARK 3 S21: 0.0284 S22: -0.0592 S23: -0.1537
REMARK 3 S31: -0.2738 S32: 0.0281 S33: 0.1241
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 4Q23 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-APR-14.
REMARK 100 THE DEPOSITION ID IS D_1000085506.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 15-MAY-09
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I02
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796
REMARK 200 MONOCHROMATOR : GRAPHITE
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM
REMARK 200 DATA SCALING SOFTWARE : SCALA
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29838
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980
REMARK 200 RESOLUTION RANGE LOW (A) : 25.020
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3
REMARK 200 DATA REDUNDANCY : NULL
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 3CP6
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 49.39
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NH4CL, 20% PEG 6000, 10% GLYCOL,
REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4
REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4
REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4
REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 -Y,-X,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.80000
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.68000
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.68000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.90000
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.68000
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.68000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.70000
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.68000
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.68000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 16.90000
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.68000
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.68000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 50.70000
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 33.80000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 6520 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 25950 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -107.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000
REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -33.80000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A -21
REMARK 465 GLY A -20
REMARK 465 SER A -19
REMARK 465 SER A -18
REMARK 465 HIS A -17
REMARK 465 HIS A -16
REMARK 465 HIS A -15
REMARK 465 HIS A -14
REMARK 465 HIS A -13
REMARK 465 HIS A -12
REMARK 465 SER A -11
REMARK 465 SER A -10
REMARK 465 GLY A -9
REMARK 465 ARG A -8
REMARK 465 GLU A -7
REMARK 465 ASN A -6
REMARK 465 LEU A -5
REMARK 465 TYR A -4
REMARK 465 PHE A -3
REMARK 465 GLN A -2
REMARK 465 GLY A -1
REMARK 465 HIS A 0
REMARK 465 MET A 1
REMARK 465 ASN A 2
REMARK 465 GLY A 3
REMARK 465 ASP A 4
REMARK 465 GLN A 5
REMARK 465 ASN A 6
REMARK 465 SER A 7
REMARK 465 ASP A 8
REMARK 465 GLU A 30
REMARK 465 ASP A 31
REMARK 465 GLU A 32
REMARK 465 MET A 33
REMARK 465 LYS A 350
REMARK 465 ARG A 351
REMARK 465 ARG A 352
REMARK 465 LYS A 353
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 VAL A 9 CG1 CG2
REMARK 470 GLN A 12 CG CD OE1 NE2
REMARK 470 GLU A 13 OE1 OE2
REMARK 470 GLN A 15 CG CD OE1 NE2
REMARK 470 ASP A 16 CG OD1 OD2
REMARK 470 GLN A 19 CG CD OE1 NE2
REMARK 470 ARG A 26 CG CD NE CZ NH1 NH2
REMARK 470 HIS A 35 CG ND1 CD2 CE1 NE2
REMARK 470 ILE A 38 CG1 CG2 CD1
REMARK 470 GLU A 73 CG CD OE1 OE2
REMARK 470 GLU A 149 OE1 OE2
REMARK 470 GLN A 180 CG CD OE1 NE2
REMARK 470 ASP A 184 CG OD1 OD2
REMARK 470 ARG A 187 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 191 CG CD CE NZ
REMARK 470 LYS A 223 CG CD CE NZ
REMARK 470 GLU A 281 CG CD OE1 OE2
REMARK 470 LYS A 287 NZ
REMARK 470 GLU A 296 CD OE1 OE2
REMARK 470 ARG A 300 CD NE CZ NH1 NH2
REMARK 470 ARG A 346 CG CD NE CZ NH1 NH2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 PRO A 36 1.36 -66.91
REMARK 500 VAL A 124 -70.83 -100.05
REMARK 500 ALA A 178 57.99 -117.90
REMARK 500 ALA A 201 -51.82 -120.48
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 902 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 103 OD2
REMARK 620 2 ASP A 107 OD2 85.8
REMARK 620 3 RIS A 901 O15 88.5 76.7
REMARK 620 4 RIS A 901 O12 96.1 169.3 92.8
REMARK 620 5 HOH A1090 O 167.7 84.3 96.4 94.9
REMARK 620 6 HOH A1092 O 83.1 101.1 171.5 89.6 91.6
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 904 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 103 OD1
REMARK 620 2 ASP A 107 OD2 89.6
REMARK 620 3 RIS A 901 O15 94.3 82.2
REMARK 620 4 HOH A1094 O 172.2 93.9 93.1
REMARK 620 5 HOH A1095 O 87.6 98.4 178.0 85.0
REMARK 620 6 HOH A1096 O 89.9 173.6 91.5 87.4 87.9
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 903 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 243 OD2
REMARK 620 2 RIS A 901 O11 102.2
REMARK 620 3 RIS A 901 O16 96.5 95.9
REMARK 620 4 HOH A1088 O 89.4 87.6 172.3
REMARK 620 5 HOH A1089 O 157.7 98.0 90.5 82.2
REMARK 620 6 HOH A1093 O 81.5 174.7 87.4 88.6 77.7
REMARK 620 N 1 2 3 4 5
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RIS A 901
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 902
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 903
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 904
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 905
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4KFA RELATED DB: PDB
REMARK 900 RELATED ID: 4KPD RELATED DB: PDB
REMARK 900 RELATED ID: 4KPJ RELATED DB: PDB
REMARK 900 RELATED ID: 4KQS RELATED DB: PDB
REMARK 900 RELATED ID: 4KQU RELATED DB: PDB
REMARK 900 RELATED ID: 4KQ5 RELATED DB: PDB
DBREF 4Q23 A 1 353 UNP P14324 FPPS_HUMAN 67 419
SEQADV 4Q23 MET A -21 UNP P14324 EXPRESSION TAG
SEQADV 4Q23 GLY A -20 UNP P14324 EXPRESSION TAG
SEQADV 4Q23 SER A -19 UNP P14324 EXPRESSION TAG
SEQADV 4Q23 SER A -18 UNP P14324 EXPRESSION TAG
SEQADV 4Q23 HIS A -17 UNP P14324 EXPRESSION TAG
SEQADV 4Q23 HIS A -16 UNP P14324 EXPRESSION TAG
SEQADV 4Q23 HIS A -15 UNP P14324 EXPRESSION TAG
SEQADV 4Q23 HIS A -14 UNP P14324 EXPRESSION TAG
SEQADV 4Q23 HIS A -13 UNP P14324 EXPRESSION TAG
SEQADV 4Q23 HIS A -12 UNP P14324 EXPRESSION TAG
SEQADV 4Q23 SER A -11 UNP P14324 EXPRESSION TAG
SEQADV 4Q23 SER A -10 UNP P14324 EXPRESSION TAG
SEQADV 4Q23 GLY A -9 UNP P14324 EXPRESSION TAG
SEQADV 4Q23 ARG A -8 UNP P14324 EXPRESSION TAG
SEQADV 4Q23 GLU A -7 UNP P14324 EXPRESSION TAG
SEQADV 4Q23 ASN A -6 UNP P14324 EXPRESSION TAG
SEQADV 4Q23 LEU A -5 UNP P14324 EXPRESSION TAG
SEQADV 4Q23 TYR A -4 UNP P14324 EXPRESSION TAG
SEQADV 4Q23 PHE A -3 UNP P14324 EXPRESSION TAG
SEQADV 4Q23 GLN A -2 UNP P14324 EXPRESSION TAG
SEQADV 4Q23 GLY A -1 UNP P14324 EXPRESSION TAG
SEQADV 4Q23 HIS A 0 UNP P14324 EXPRESSION TAG
SEQADV 4Q23 ALA A 201 UNP P14324 THR 267 ENGINEERED MUTATION
SEQRES 1 A 375 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY
SEQRES 2 A 375 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET ASN GLY ASP
SEQRES 3 A 375 GLN ASN SER ASP VAL TYR ALA GLN GLU LYS GLN ASP PHE
SEQRES 4 A 375 VAL GLN HIS PHE SER GLN ILE VAL ARG VAL LEU THR GLU
SEQRES 5 A 375 ASP GLU MET GLY HIS PRO GLU ILE GLY ASP ALA ILE ALA
SEQRES 6 A 375 ARG LEU LYS GLU VAL LEU GLU TYR ASN ALA ILE GLY GLY
SEQRES 7 A 375 LYS TYR ASN ARG GLY LEU THR VAL VAL VAL ALA PHE ARG
SEQRES 8 A 375 GLU LEU VAL GLU PRO ARG LYS GLN ASP ALA ASP SER LEU
SEQRES 9 A 375 GLN ARG ALA TRP THR VAL GLY TRP CYS VAL GLU LEU LEU
SEQRES 10 A 375 GLN ALA PHE PHE LEU VAL ALA ASP ASP ILE MET ASP SER
SEQRES 11 A 375 SER LEU THR ARG ARG GLY GLN ILE CYS TRP TYR GLN LYS
SEQRES 12 A 375 PRO GLY VAL GLY LEU ASP ALA ILE ASN ASP ALA ASN LEU
SEQRES 13 A 375 LEU GLU ALA CYS ILE TYR ARG LEU LEU LYS LEU TYR CYS
SEQRES 14 A 375 ARG GLU GLN PRO TYR TYR LEU ASN LEU ILE GLU LEU PHE
SEQRES 15 A 375 LEU GLN SER SER TYR GLN THR GLU ILE GLY GLN THR LEU
SEQRES 16 A 375 ASP LEU LEU THR ALA PRO GLN GLY ASN VAL ASP LEU VAL
SEQRES 17 A 375 ARG PHE THR GLU LYS ARG TYR LYS SER ILE VAL LYS TYR
SEQRES 18 A 375 LYS ALA ALA PHE TYR SER PHE TYR LEU PRO ILE ALA ALA
SEQRES 19 A 375 ALA MET TYR MET ALA GLY ILE ASP GLY GLU LYS GLU HIS
SEQRES 20 A 375 ALA ASN ALA LYS LYS ILE LEU LEU GLU MET GLY GLU PHE
SEQRES 21 A 375 PHE GLN ILE GLN ASP ASP TYR LEU ASP LEU PHE GLY ASP
SEQRES 22 A 375 PRO SER VAL THR GLY LYS ILE GLY THR ASP ILE GLN ASP
SEQRES 23 A 375 ASN LYS CYS SER TRP LEU VAL VAL GLN CYS LEU GLN ARG
SEQRES 24 A 375 ALA THR PRO GLU GLN TYR GLN ILE LEU LYS GLU ASN TYR
SEQRES 25 A 375 GLY GLN LYS GLU ALA GLU LYS VAL ALA ARG VAL LYS ALA
SEQRES 26 A 375 LEU TYR GLU GLU LEU ASP LEU PRO ALA VAL PHE LEU GLN
SEQRES 27 A 375 TYR GLU GLU ASP SER TYR SER HIS ILE MET ALA LEU ILE
SEQRES 28 A 375 GLU GLN TYR ALA ALA PRO LEU PRO PRO ALA VAL PHE LEU
SEQRES 29 A 375 GLY LEU ALA ARG LYS ILE TYR LYS ARG ARG LYS
HET RIS A 901 17
HET MG A 902 1
HET MG A 903 1
HET MG A 904 1
HET SO4 A 905 5
HETNAM RIS 1-HYDROXY-2-(3-PYRIDINYL)ETHYLIDENE BIS-PHOSPHONIC ACID
HETNAM MG MAGNESIUM ION
HETNAM SO4 SULFATE ION
HETSYN RIS RISEDRONATE
FORMUL 2 RIS C7 H11 N O7 P2
FORMUL 3 MG 3(MG 2+)
FORMUL 6 SO4 O4 S 2-
FORMUL 7 HOH *121(H2 O)
HELIX 1 1 TYR A 10 HIS A 20 1 11
HELIX 2 2 HIS A 20 THR A 29 1 10
HELIX 3 3 HIS A 35 GLU A 37 5 3
HELIX 4 4 ILE A 38 ALA A 53 1 16
HELIX 5 5 TYR A 58 VAL A 72 1 15
HELIX 6 6 GLU A 73 GLN A 77 5 5
HELIX 7 7 ASP A 78 ASP A 107 1 30
HELIX 8 8 TRP A 118 LYS A 121 5 4
HELIX 9 9 VAL A 124 LEU A 126 5 3
HELIX 10 10 ASP A 127 ARG A 148 1 22
HELIX 11 11 TYR A 152 ALA A 178 1 27
HELIX 12 12 ASP A 184 PHE A 188 5 5
HELIX 13 13 THR A 189 ALA A 201 1 13
HELIX 14 14 ALA A 201 PHE A 206 1 6
HELIX 15 15 PHE A 206 ALA A 217 1 12
HELIX 16 16 GLY A 221 GLY A 250 1 30
HELIX 17 17 ASP A 251 GLY A 256 1 6
HELIX 18 18 SER A 268 GLN A 276 1 9
HELIX 19 19 THR A 279 TYR A 290 1 12
HELIX 20 20 GLU A 294 LEU A 308 1 15
HELIX 21 21 ASP A 309 ALA A 333 1 25
HELIX 22 22 PRO A 338 TYR A 349 1 12
SHEET 1 A 2 THR A 111 ARG A 112 0
SHEET 2 A 2 GLN A 115 ILE A 116 -1 O GLN A 115 N ARG A 112
LINK OD2 ASP A 103 MG MG A 902 1555 1555 2.03
LINK OD1 ASP A 103 MG MG A 904 1555 1555 1.95
LINK OD2 ASP A 107 MG MG A 902 1555 1555 2.26
LINK OD2 ASP A 107 MG MG A 904 1555 1555 2.03
LINK OD2 ASP A 243 MG MG A 903 1555 1555 2.11
LINK O15 RIS A 901 MG MG A 902 1555 1555 2.08
LINK O12 RIS A 901 MG MG A 902 1555 1555 2.24
LINK O11 RIS A 901 MG MG A 903 1555 1555 1.92
LINK O16 RIS A 901 MG MG A 903 1555 1555 1.97
LINK O15 RIS A 901 MG MG A 904 1555 1555 2.08
LINK MG MG A 902 O HOH A1090 1555 1555 2.08
LINK MG MG A 902 O HOH A1092 1555 1555 2.13
LINK MG MG A 903 O HOH A1088 1555 1555 2.13
LINK MG MG A 903 O HOH A1089 1555 1555 2.01
LINK MG MG A 903 O HOH A1093 1555 1555 2.13
LINK MG MG A 904 O HOH A1094 1555 1555 2.03
LINK MG MG A 904 O HOH A1095 1555 1555 2.17
LINK MG MG A 904 O HOH A1096 1555 1555 2.07
CISPEP 1 ALA A 334 PRO A 335 0 7.81
SITE 1 AC1 19 LEU A 100 ASP A 103 ASP A 107 ARG A 112
SITE 2 AC1 19 GLN A 171 LYS A 200 ASP A 243 LYS A 257
SITE 3 AC1 19 MG A 902 MG A 903 MG A 904 HOH A1001
SITE 4 AC1 19 HOH A1003 HOH A1088 HOH A1089 HOH A1092
SITE 5 AC1 19 HOH A1093 HOH A1094 HOH A1096
SITE 1 AC2 6 ASP A 103 ASP A 107 RIS A 901 MG A 904
SITE 2 AC2 6 HOH A1090 HOH A1092
SITE 1 AC3 5 ASP A 243 RIS A 901 HOH A1088 HOH A1089
SITE 2 AC3 5 HOH A1093
SITE 1 AC4 7 ASP A 103 ASP A 107 RIS A 901 MG A 902
SITE 2 AC4 7 HOH A1094 HOH A1095 HOH A1096
SITE 1 AC5 8 GLY A 56 LYS A 57 GLN A 96 ARG A 113
SITE 2 AC5 8 HOH A1016 HOH A1056 HOH A1099 HOH A1119
CRYST1 111.360 111.360 67.600 90.00 90.00 90.00 P 41 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008980 0.000000 0.000000 0.00000
SCALE2 0.000000 0.008980 0.000000 0.00000
SCALE3 0.000000 0.000000 0.014793 0.00000