HEADER DNA BINDING PROTEIN 08-APR-14 4Q2J TITLE A NOVEL STRUCTURE-BASED MECHANISM FOR DNA-BINDING OF SATB1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-BINDING PROTEIN SATB1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, UNP RESIDUES; COMPND 5 SYNONYM: SPECIAL AT-RICH SEQUENCE-BINDING PROTEIN 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SATB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.WANG,J.LONG,X.YANG,Y.SHEN REVDAT 2 20-MAR-24 4Q2J 1 SEQADV REVDAT 1 11-MAR-15 4Q2J 0 JRNL AUTH Z.WANG,X.YANG,S.GUO,Y.YANG,X.C.SU,Y.SHEN,J.LONG JRNL TITL CRYSTAL STRUCTURE OF THE UBIQUITIN-LIKE DOMAIN-CUT JRNL TITL 2 REPEAT-LIKE TANDEM OF SPECIAL AT-RICH SEQUENCE BINDING JRNL TITL 3 PROTEIN 1 (SATB1) REVEALS A COORDINATING DNA-BINDING JRNL TITL 4 MECHANISM. JRNL REF J.BIOL.CHEM. V. 289 27376 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 25124042 JRNL DOI 10.1074/JBC.M114.562314 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 3 NUMBER OF REFLECTIONS : 19988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1266 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.4778 - 5.4116 0.99 2991 158 0.2165 0.2467 REMARK 3 2 5.4116 - 4.2967 0.99 2935 171 0.1988 0.2062 REMARK 3 3 4.2967 - 3.7540 0.98 2909 142 0.1990 0.2728 REMARK 3 4 3.7540 - 3.4109 0.97 2876 148 0.2328 0.2716 REMARK 3 5 3.4109 - 3.1665 0.96 2834 130 0.2463 0.2710 REMARK 3 6 3.1665 - 2.9799 0.91 2695 136 0.2609 0.3707 REMARK 3 7 2.9799 - 2.8307 0.84 2471 119 0.2778 0.3651 REMARK 3 8 2.8307 - 2.7075 0.80 2377 138 0.3017 0.4002 REMARK 3 9 2.7075 - 2.6032 0.72 2100 124 0.3202 0.4215 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 40.61 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -17.21910 REMARK 3 B22 (A**2) : 35.90660 REMARK 3 B33 (A**2) : -18.68750 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.76620 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4108 REMARK 3 ANGLE : 1.309 5581 REMARK 3 CHIRALITY : 0.085 657 REMARK 3 PLANARITY : 0.005 702 REMARK 3 DIHEDRAL : 19.358 1474 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Q2J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085522. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25454 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 72.1 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : 0.07700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% POLYETHYLENE GLYCOL 3350, 0.1M REMARK 280 SODIUM MALONATE PH 7.0, 0.2M GLYCINE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 64.48900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.98550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 64.48900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.98550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 83 REMARK 465 GLU A 84 REMARK 465 ASN A 85 REMARK 465 ALA A 86 REMARK 465 ILE A 87 REMARK 465 GLU A 88 REMARK 465 TYR A 89 REMARK 465 ASP A 90 REMARK 465 CYS A 91 REMARK 465 LYS A 245 REMARK 465 THR A 246 REMARK 465 GLY B 67 REMARK 465 TYR B 83 REMARK 465 GLU B 84 REMARK 465 ASN B 85 REMARK 465 ALA B 86 REMARK 465 ILE B 87 REMARK 465 GLU B 88 REMARK 465 TYR B 89 REMARK 465 ASP B 90 REMARK 465 CYS B 91 REMARK 465 LYS B 92 REMARK 465 SER B 172 REMARK 465 CYS B 173 REMARK 465 PRO B 174 REMARK 465 LYS B 175 REMARK 465 LEU B 176 REMARK 465 GLU B 177 REMARK 465 ASP B 178 REMARK 465 LEU B 179 REMARK 465 PRO B 180 REMARK 465 PRO B 181 REMARK 465 GLU B 182 REMARK 465 GLN B 183 REMARK 465 TRP B 184 REMARK 465 SER B 185 REMARK 465 HIS B 186 REMARK 465 THR B 187 REMARK 465 THR B 188 REMARK 465 VAL B 189 REMARK 465 ARG B 190 REMARK 465 ASN B 191 REMARK 465 ALA B 192 REMARK 465 LEU B 193 REMARK 465 LYS B 194 REMARK 465 ASP B 195 REMARK 465 LEU B 196 REMARK 465 LEU B 197 REMARK 465 LYS B 198 REMARK 465 ASP B 199 REMARK 465 MET B 200 REMARK 465 ASN B 201 REMARK 465 GLN B 202 REMARK 465 SER B 203 REMARK 465 SER B 204 REMARK 465 LEU B 205 REMARK 465 ALA B 206 REMARK 465 LYS B 207 REMARK 465 GLU B 208 REMARK 465 CYS B 209 REMARK 465 PRO B 210 REMARK 465 LEU B 211 REMARK 465 SER B 212 REMARK 465 GLN B 213 REMARK 465 SER B 214 REMARK 465 MET B 215 REMARK 465 ILE B 216 REMARK 465 SER B 217 REMARK 465 SER B 218 REMARK 465 ILE B 219 REMARK 465 VAL B 220 REMARK 465 ASN B 221 REMARK 465 SER B 222 REMARK 465 THR B 223 REMARK 465 TYR B 224 REMARK 465 TYR B 225 REMARK 465 ALA B 226 REMARK 465 ASN B 227 REMARK 465 VAL B 228 REMARK 465 SER B 229 REMARK 465 ALA B 230 REMARK 465 ALA B 231 REMARK 465 LYS B 232 REMARK 465 CYS B 233 REMARK 465 GLN B 234 REMARK 465 GLU B 235 REMARK 465 PHE B 236 REMARK 465 GLY B 237 REMARK 465 ARG B 238 REMARK 465 TRP B 239 REMARK 465 TYR B 240 REMARK 465 LYS B 241 REMARK 465 HIS B 242 REMARK 465 PHE B 243 REMARK 465 LYS B 244 REMARK 465 LYS B 245 REMARK 465 THR B 246 REMARK 465 GLY C 67 REMARK 465 PRO C 68 REMARK 465 TYR C 83 REMARK 465 GLU C 84 REMARK 465 ASN C 85 REMARK 465 ALA C 86 REMARK 465 ILE C 87 REMARK 465 GLU C 88 REMARK 465 TYR C 89 REMARK 465 ASP C 90 REMARK 465 CYS C 91 REMARK 465 LYS C 92 REMARK 465 GLU C 93 REMARK 465 SER C 172 REMARK 465 CYS C 173 REMARK 465 PRO C 174 REMARK 465 LYS C 175 REMARK 465 LEU C 176 REMARK 465 GLU C 177 REMARK 465 ASP C 178 REMARK 465 LEU C 179 REMARK 465 PRO C 180 REMARK 465 PRO C 181 REMARK 465 GLU C 182 REMARK 465 GLN C 183 REMARK 465 TRP C 184 REMARK 465 SER C 185 REMARK 465 HIS C 186 REMARK 465 THR C 187 REMARK 465 THR C 188 REMARK 465 VAL C 189 REMARK 465 ARG C 190 REMARK 465 ASN C 191 REMARK 465 ALA C 192 REMARK 465 LEU C 193 REMARK 465 LYS C 194 REMARK 465 ASP C 195 REMARK 465 LEU C 196 REMARK 465 LEU C 197 REMARK 465 LYS C 198 REMARK 465 ASP C 199 REMARK 465 MET C 200 REMARK 465 ASN C 201 REMARK 465 GLN C 202 REMARK 465 SER C 203 REMARK 465 SER C 204 REMARK 465 LEU C 205 REMARK 465 ALA C 206 REMARK 465 LYS C 207 REMARK 465 GLU C 208 REMARK 465 CYS C 209 REMARK 465 PRO C 210 REMARK 465 LEU C 211 REMARK 465 SER C 212 REMARK 465 GLN C 213 REMARK 465 SER C 214 REMARK 465 MET C 215 REMARK 465 ILE C 216 REMARK 465 SER C 217 REMARK 465 SER C 218 REMARK 465 ILE C 219 REMARK 465 VAL C 220 REMARK 465 ASN C 221 REMARK 465 SER C 222 REMARK 465 THR C 223 REMARK 465 TYR C 224 REMARK 465 TYR C 225 REMARK 465 ALA C 226 REMARK 465 ASN C 227 REMARK 465 VAL C 228 REMARK 465 SER C 229 REMARK 465 ALA C 230 REMARK 465 ALA C 231 REMARK 465 LYS C 232 REMARK 465 CYS C 233 REMARK 465 GLN C 234 REMARK 465 GLU C 235 REMARK 465 PHE C 236 REMARK 465 GLY C 237 REMARK 465 ARG C 238 REMARK 465 TRP C 239 REMARK 465 TYR C 240 REMARK 465 LYS C 241 REMARK 465 HIS C 242 REMARK 465 PHE C 243 REMARK 465 LYS C 244 REMARK 465 LYS C 245 REMARK 465 THR C 246 REMARK 465 GLY D 67 REMARK 465 ASN D 85 REMARK 465 ALA D 86 REMARK 465 ILE D 87 REMARK 465 GLU D 88 REMARK 465 TYR D 89 REMARK 465 ASP D 90 REMARK 465 CYS D 91 REMARK 465 LYS D 92 REMARK 465 GLU D 93 REMARK 465 SER D 172 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 172 OG REMARK 470 TYR A 224 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PRO B 68 CG CD REMARK 470 HIS B 171 CG ND1 CD2 CE1 NE2 REMARK 470 GLU C 94 CG CD OE1 OE2 REMARK 470 HIS C 171 CG ND1 CD2 CE1 NE2 REMARK 470 HIS D 82 CG ND1 CD2 CE1 NE2 REMARK 470 TYR D 83 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU D 84 CG CD OE1 OE2 REMARK 470 GLU D 94 CG CD OE1 OE2 REMARK 470 HIS D 95 CG ND1 CD2 CE1 NE2 REMARK 470 HIS D 171 CG ND1 CD2 CE1 NE2 REMARK 470 THR D 223 OG1 CG2 REMARK 470 TYR D 224 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR D 225 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS D 241 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 68 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 PRO B 68 N - CA - CB ANGL. DEV. = 7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 70 -155.48 175.71 REMARK 500 GLU A 93 75.00 -104.34 REMARK 500 GLU A 97 137.89 -178.06 REMARK 500 SER A 172 -139.00 -132.80 REMARK 500 LEU A 176 -30.87 -31.91 REMARK 500 LEU A 197 -6.95 -57.05 REMARK 500 ASP A 199 19.09 -159.24 REMARK 500 ASN A 227 38.37 -73.56 REMARK 500 HIS A 242 -80.81 -54.15 REMARK 500 SER B 117 -18.85 -48.77 REMARK 500 LEU B 142 1.32 -51.44 REMARK 500 HIS C 95 76.79 99.88 REMARK 500 MET C 105 170.45 -52.39 REMARK 500 TYR C 120 152.76 -46.13 REMARK 500 ALA C 148 100.55 -46.16 REMARK 500 LEU C 157 -9.15 -141.05 REMARK 500 SER D 70 160.87 -40.54 REMARK 500 HIS D 82 119.30 -162.81 REMARK 500 ALA D 96 108.65 -173.01 REMARK 500 SER D 121 141.15 -33.38 REMARK 500 ALA D 125 45.78 -84.44 REMARK 500 ALA D 126 -54.01 -137.72 REMARK 500 GLN D 127 36.91 -74.82 REMARK 500 LEU D 142 -4.88 -53.76 REMARK 500 PRO D 210 3.53 -68.51 REMARK 500 SER D 222 9.91 90.41 REMARK 500 TYR D 224 44.24 -168.72 REMARK 500 ALA D 226 73.86 87.86 REMARK 500 LYS D 245 51.23 -112.61 REMARK 500 REMARK 500 REMARK: NULL DBREF 4Q2J A 71 246 UNP Q60611 SATB1_MOUSE 71 246 DBREF 4Q2J B 71 246 UNP Q60611 SATB1_MOUSE 71 246 DBREF 4Q2J C 71 246 UNP Q60611 SATB1_MOUSE 71 246 DBREF 4Q2J D 71 246 UNP Q60611 SATB1_MOUSE 71 246 SEQADV 4Q2J GLY A 67 UNP Q60611 EXPRESSION TAG SEQADV 4Q2J PRO A 68 UNP Q60611 EXPRESSION TAG SEQADV 4Q2J GLY A 69 UNP Q60611 EXPRESSION TAG SEQADV 4Q2J SER A 70 UNP Q60611 EXPRESSION TAG SEQADV 4Q2J GLY B 67 UNP Q60611 EXPRESSION TAG SEQADV 4Q2J PRO B 68 UNP Q60611 EXPRESSION TAG SEQADV 4Q2J GLY B 69 UNP Q60611 EXPRESSION TAG SEQADV 4Q2J SER B 70 UNP Q60611 EXPRESSION TAG SEQADV 4Q2J GLY C 67 UNP Q60611 EXPRESSION TAG SEQADV 4Q2J PRO C 68 UNP Q60611 EXPRESSION TAG SEQADV 4Q2J GLY C 69 UNP Q60611 EXPRESSION TAG SEQADV 4Q2J SER C 70 UNP Q60611 EXPRESSION TAG SEQADV 4Q2J GLY D 67 UNP Q60611 EXPRESSION TAG SEQADV 4Q2J PRO D 68 UNP Q60611 EXPRESSION TAG SEQADV 4Q2J GLY D 69 UNP Q60611 EXPRESSION TAG SEQADV 4Q2J SER D 70 UNP Q60611 EXPRESSION TAG SEQRES 1 A 180 GLY PRO GLY SER GLY THR MET LEU PRO VAL PHE CYS VAL SEQRES 2 A 180 VAL GLU HIS TYR GLU ASN ALA ILE GLU TYR ASP CYS LYS SEQRES 3 A 180 GLU GLU HIS ALA GLU PHE VAL LEU VAL ARG LYS ASP MET SEQRES 4 A 180 LEU PHE ASN GLN LEU ILE GLU MET ALA LEU LEU SER LEU SEQRES 5 A 180 GLY TYR SER HIS SER SER ALA ALA GLN ALA LYS GLY LEU SEQRES 6 A 180 ILE GLN VAL GLY LYS TRP ASN PRO VAL PRO LEU SER TYR SEQRES 7 A 180 VAL THR ASP ALA PRO ASP ALA THR VAL ALA ASP MET LEU SEQRES 8 A 180 GLN ASP VAL TYR HIS VAL VAL THR LEU LYS ILE GLN LEU SEQRES 9 A 180 HIS SER CYS PRO LYS LEU GLU ASP LEU PRO PRO GLU GLN SEQRES 10 A 180 TRP SER HIS THR THR VAL ARG ASN ALA LEU LYS ASP LEU SEQRES 11 A 180 LEU LYS ASP MET ASN GLN SER SER LEU ALA LYS GLU CYS SEQRES 12 A 180 PRO LEU SER GLN SER MET ILE SER SER ILE VAL ASN SER SEQRES 13 A 180 THR TYR TYR ALA ASN VAL SER ALA ALA LYS CYS GLN GLU SEQRES 14 A 180 PHE GLY ARG TRP TYR LYS HIS PHE LYS LYS THR SEQRES 1 B 180 GLY PRO GLY SER GLY THR MET LEU PRO VAL PHE CYS VAL SEQRES 2 B 180 VAL GLU HIS TYR GLU ASN ALA ILE GLU TYR ASP CYS LYS SEQRES 3 B 180 GLU GLU HIS ALA GLU PHE VAL LEU VAL ARG LYS ASP MET SEQRES 4 B 180 LEU PHE ASN GLN LEU ILE GLU MET ALA LEU LEU SER LEU SEQRES 5 B 180 GLY TYR SER HIS SER SER ALA ALA GLN ALA LYS GLY LEU SEQRES 6 B 180 ILE GLN VAL GLY LYS TRP ASN PRO VAL PRO LEU SER TYR SEQRES 7 B 180 VAL THR ASP ALA PRO ASP ALA THR VAL ALA ASP MET LEU SEQRES 8 B 180 GLN ASP VAL TYR HIS VAL VAL THR LEU LYS ILE GLN LEU SEQRES 9 B 180 HIS SER CYS PRO LYS LEU GLU ASP LEU PRO PRO GLU GLN SEQRES 10 B 180 TRP SER HIS THR THR VAL ARG ASN ALA LEU LYS ASP LEU SEQRES 11 B 180 LEU LYS ASP MET ASN GLN SER SER LEU ALA LYS GLU CYS SEQRES 12 B 180 PRO LEU SER GLN SER MET ILE SER SER ILE VAL ASN SER SEQRES 13 B 180 THR TYR TYR ALA ASN VAL SER ALA ALA LYS CYS GLN GLU SEQRES 14 B 180 PHE GLY ARG TRP TYR LYS HIS PHE LYS LYS THR SEQRES 1 C 180 GLY PRO GLY SER GLY THR MET LEU PRO VAL PHE CYS VAL SEQRES 2 C 180 VAL GLU HIS TYR GLU ASN ALA ILE GLU TYR ASP CYS LYS SEQRES 3 C 180 GLU GLU HIS ALA GLU PHE VAL LEU VAL ARG LYS ASP MET SEQRES 4 C 180 LEU PHE ASN GLN LEU ILE GLU MET ALA LEU LEU SER LEU SEQRES 5 C 180 GLY TYR SER HIS SER SER ALA ALA GLN ALA LYS GLY LEU SEQRES 6 C 180 ILE GLN VAL GLY LYS TRP ASN PRO VAL PRO LEU SER TYR SEQRES 7 C 180 VAL THR ASP ALA PRO ASP ALA THR VAL ALA ASP MET LEU SEQRES 8 C 180 GLN ASP VAL TYR HIS VAL VAL THR LEU LYS ILE GLN LEU SEQRES 9 C 180 HIS SER CYS PRO LYS LEU GLU ASP LEU PRO PRO GLU GLN SEQRES 10 C 180 TRP SER HIS THR THR VAL ARG ASN ALA LEU LYS ASP LEU SEQRES 11 C 180 LEU LYS ASP MET ASN GLN SER SER LEU ALA LYS GLU CYS SEQRES 12 C 180 PRO LEU SER GLN SER MET ILE SER SER ILE VAL ASN SER SEQRES 13 C 180 THR TYR TYR ALA ASN VAL SER ALA ALA LYS CYS GLN GLU SEQRES 14 C 180 PHE GLY ARG TRP TYR LYS HIS PHE LYS LYS THR SEQRES 1 D 180 GLY PRO GLY SER GLY THR MET LEU PRO VAL PHE CYS VAL SEQRES 2 D 180 VAL GLU HIS TYR GLU ASN ALA ILE GLU TYR ASP CYS LYS SEQRES 3 D 180 GLU GLU HIS ALA GLU PHE VAL LEU VAL ARG LYS ASP MET SEQRES 4 D 180 LEU PHE ASN GLN LEU ILE GLU MET ALA LEU LEU SER LEU SEQRES 5 D 180 GLY TYR SER HIS SER SER ALA ALA GLN ALA LYS GLY LEU SEQRES 6 D 180 ILE GLN VAL GLY LYS TRP ASN PRO VAL PRO LEU SER TYR SEQRES 7 D 180 VAL THR ASP ALA PRO ASP ALA THR VAL ALA ASP MET LEU SEQRES 8 D 180 GLN ASP VAL TYR HIS VAL VAL THR LEU LYS ILE GLN LEU SEQRES 9 D 180 HIS SER CYS PRO LYS LEU GLU ASP LEU PRO PRO GLU GLN SEQRES 10 D 180 TRP SER HIS THR THR VAL ARG ASN ALA LEU LYS ASP LEU SEQRES 11 D 180 LEU LYS ASP MET ASN GLN SER SER LEU ALA LYS GLU CYS SEQRES 12 D 180 PRO LEU SER GLN SER MET ILE SER SER ILE VAL ASN SER SEQRES 13 D 180 THR TYR TYR ALA ASN VAL SER ALA ALA LYS CYS GLN GLU SEQRES 14 D 180 PHE GLY ARG TRP TYR LYS HIS PHE LYS LYS THR FORMUL 5 HOH *13(H2 O) HELIX 1 1 LEU A 106 ASN A 108 5 3 HELIX 2 2 GLN A 109 LEU A 118 1 10 HELIX 3 3 HIS A 122 GLN A 127 5 6 HELIX 4 4 LEU A 142 THR A 146 1 5 HELIX 5 5 THR A 152 GLN A 158 1 7 HELIX 6 6 PRO A 180 TRP A 184 5 5 HELIX 7 7 SER A 185 LYS A 198 1 14 HELIX 8 8 ASN A 201 CYS A 209 1 9 HELIX 9 9 SER A 212 ASN A 221 1 10 HELIX 10 10 SER A 229 PHE A 243 1 15 HELIX 11 11 LEU B 106 ASN B 108 5 3 HELIX 12 12 GLN B 109 TYR B 120 1 12 HELIX 13 13 SER B 121 GLN B 127 1 7 HELIX 14 14 LEU B 142 THR B 146 1 5 HELIX 15 15 THR B 152 GLN B 158 1 7 HELIX 16 16 VAL B 160 HIS B 162 5 3 HELIX 17 17 LEU C 106 ASN C 108 5 3 HELIX 18 18 GLN C 109 SER C 117 1 9 HELIX 19 19 THR C 152 GLN C 158 1 7 HELIX 20 20 LEU D 106 ASN D 108 5 3 HELIX 21 21 GLN D 109 SER D 117 1 9 HELIX 22 22 SER D 121 ALA D 125 5 5 HELIX 23 23 THR D 152 GLN D 158 1 7 HELIX 24 24 LYS D 175 LEU D 179 5 5 HELIX 25 25 PRO D 180 TRP D 184 5 5 HELIX 26 26 SER D 185 ASP D 199 1 15 HELIX 27 27 ASN D 201 CYS D 209 1 9 HELIX 28 28 SER D 212 SER D 222 1 11 HELIX 29 29 SER D 229 LYS D 245 1 17 SHEET 1 A 5 HIS A 95 ARG A 102 0 SHEET 2 A 5 MET A 73 GLU A 81 -1 N LEU A 74 O VAL A 101 SHEET 3 A 5 VAL A 164 GLN A 169 1 O ILE A 168 N VAL A 79 SHEET 4 A 5 LYS A 129 VAL A 134 -1 N LYS A 129 O GLN A 169 SHEET 5 A 5 VAL A 140 PRO A 141 -1 O VAL A 140 N ILE A 132 SHEET 1 B 5 HIS B 95 ARG B 102 0 SHEET 2 B 5 MET B 73 GLU B 81 -1 N LEU B 74 O VAL B 101 SHEET 3 B 5 VAL B 164 LEU B 170 1 O ILE B 168 N GLU B 81 SHEET 4 B 5 ALA B 128 VAL B 134 -1 N LYS B 129 O GLN B 169 SHEET 5 B 5 VAL B 140 PRO B 141 -1 O VAL B 140 N ILE B 132 SHEET 1 C 5 ALA C 96 ARG C 102 0 SHEET 2 C 5 MET C 73 GLU C 81 -1 N VAL C 76 O VAL C 99 SHEET 3 C 5 VAL C 164 LEU C 170 1 O LEU C 166 N PHE C 77 SHEET 4 C 5 ALA C 128 VAL C 134 -1 N LYS C 129 O GLN C 169 SHEET 5 C 5 VAL C 140 PRO C 141 -1 O VAL C 140 N ILE C 132 SHEET 1 D 5 ALA D 96 ARG D 102 0 SHEET 2 D 5 MET D 73 GLU D 81 -1 N VAL D 76 O VAL D 99 SHEET 3 D 5 VAL D 164 LEU D 170 1 O LEU D 170 N GLU D 81 SHEET 4 D 5 ALA D 128 VAL D 134 -1 N LYS D 129 O GLN D 169 SHEET 5 D 5 VAL D 140 PRO D 141 -1 O VAL D 140 N ILE D 132 CISPEP 1 SER A 172 CYS A 173 0 -2.10 CISPEP 2 PHE A 243 LYS A 244 0 4.99 CISPEP 3 ALA C 125 ALA C 126 0 9.15 CISPEP 4 GLY D 69 SER D 70 0 9.80 CISPEP 5 THR D 223 TYR D 224 0 3.10 CISPEP 6 TYR D 224 TYR D 225 0 6.30 CISPEP 7 TYR D 225 ALA D 226 0 -3.40 CRYST1 128.978 91.971 100.239 90.00 128.97 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007753 0.000000 0.006272 0.00000 SCALE2 0.000000 0.010873 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012832 0.00000