HEADER DNA BINDING PROTEIN 14-APR-14 4Q47 TITLE STRUCTURE OF THE DRRECQ CATALYTIC CORE IN COMPLEX WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA HELICASE RECQ; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-517; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 243230; SOURCE 4 STRAIN: ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / SOURCE 5 NCIMB 9279 / R1 / VKM B-1422; SOURCE 6 GENE: DR_1289; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA UNWINDING, TOPOISOMERASE, HELICASE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.C.CHEN,C.S.YANG,Y.CHEN REVDAT 2 08-NOV-23 4Q47 1 REMARK SEQADV LINK REVDAT 1 20-MAY-15 4Q47 0 JRNL AUTH S.C.CHEN,C.H.HUANG,C.S.YANG,T.D.WAY,M.C.CHANG,Y.CHEN JRNL TITL CRYSTAL STRUCTURE OF DEINOCOCCUS RADIODURANS RECQ HELICASE JRNL TITL 2 CATALYTIC CORE DOMAIN: THE INTERDOMAIN FLEXIBILITY. JRNL REF BIOMED RES INT V.2014 42725 2014 JRNL REFN ISSN 2314-6133 JRNL PMID 25243132 JRNL DOI 10.1155/2014/342725 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 33750 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.920 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.5613 - 6.9527 0.99 2410 152 0.1778 0.2331 REMARK 3 2 6.9527 - 5.5332 1.00 2339 147 0.2381 0.2813 REMARK 3 3 5.5332 - 4.8381 1.00 2292 145 0.2128 0.2724 REMARK 3 4 4.8381 - 4.3977 1.00 2275 143 0.2006 0.2671 REMARK 3 5 4.3977 - 4.0835 1.00 2281 144 0.2000 0.2790 REMARK 3 6 4.0835 - 3.8435 1.00 2254 141 0.2310 0.2767 REMARK 3 7 3.8435 - 3.6514 1.00 2268 143 0.2396 0.3859 REMARK 3 8 3.6514 - 3.4928 1.00 2252 142 0.2553 0.3512 REMARK 3 9 3.4928 - 3.3586 1.00 2244 142 0.2623 0.3178 REMARK 3 10 3.3586 - 3.2429 1.00 2249 141 0.2454 0.3260 REMARK 3 11 3.2429 - 3.1416 1.00 2235 141 0.2636 0.3986 REMARK 3 12 3.1416 - 3.0519 1.00 2250 142 0.2747 0.3918 REMARK 3 13 3.0519 - 2.9717 1.00 2227 139 0.2979 0.4646 REMARK 3 14 2.9717 - 2.8993 0.97 2175 137 0.3282 0.4015 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 8187 REMARK 3 ANGLE : 1.787 11077 REMARK 3 CHIRALITY : 0.262 1247 REMARK 3 PLANARITY : 0.008 1445 REMARK 3 DIHEDRAL : 16.763 3056 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Q47 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085582. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33811 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.899 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.50 REMARK 200 R MERGE FOR SHELL (I) : 0.67800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1OYW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MIDAZOLE (PH7.2), 16% PEG 20K, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.37800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.91600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.80500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 91.91600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.37800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.80500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 PHE A 296 REMARK 465 GLY A 297 REMARK 465 MET A 298 REMARK 465 GLY A 299 REMARK 465 HIS A 522 REMARK 465 HIS A 523 REMARK 465 HIS A 524 REMARK 465 HIS A 525 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ALA B 3 REMARK 465 ALA B 4 REMARK 465 PRO B 5 REMARK 465 ALA B 6 REMARK 465 ALA B 7 REMARK 465 PHE B 296 REMARK 465 GLY B 297 REMARK 465 MET B 298 REMARK 465 GLY B 299 REMARK 465 ILE B 300 REMARK 465 LEU B 515 REMARK 465 PRO B 516 REMARK 465 GLY B 517 REMARK 465 LEU B 518 REMARK 465 GLU B 519 REMARK 465 HIS B 520 REMARK 465 HIS B 521 REMARK 465 HIS B 522 REMARK 465 HIS B 523 REMARK 465 HIS B 524 REMARK 465 HIS B 525 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 22 C2' ADP A 601 2.03 REMARK 500 OG SER B 271 OE1 GLU B 274 2.05 REMARK 500 OG SER A 271 OG1 THR A 273 2.07 REMARK 500 OG1 THR B 66 O LEU B 115 2.13 REMARK 500 O PHE B 207 OH TYR B 321 2.13 REMARK 500 O HIS B 14 OG1 THR B 18 2.17 REMARK 500 NZ LYS A 247 OE2 GLU A 251 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN B 152 CG GLN B 152 CD -0.163 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 94 CA - CB - CG ANGL. DEV. = 17.4 DEGREES REMARK 500 GLN B 152 N - CA - CB ANGL. DEV. = -19.5 DEGREES REMARK 500 GLN B 152 N - CA - C ANGL. DEV. = 22.9 DEGREES REMARK 500 VAL B 288 CG1 - CB - CG2 ANGL. DEV. = -9.9 DEGREES REMARK 500 PRO B 333 C - N - CA ANGL. DEV. = 10.6 DEGREES REMARK 500 GLN B 354 N - CA - C ANGL. DEV. = 19.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 129 -25.51 82.68 REMARK 500 HIS A 155 -18.47 79.46 REMARK 500 ASP A 156 156.63 176.86 REMARK 500 SER A 205 -70.51 -132.14 REMARK 500 SER A 221 74.75 54.37 REMARK 500 ILE A 230 -78.25 -62.82 REMARK 500 ARG A 231 -103.72 27.45 REMARK 500 HIS A 234 59.10 -146.53 REMARK 500 SER A 272 -71.97 -54.69 REMARK 500 THR A 273 -106.88 28.75 REMARK 500 THR A 293 -93.23 -102.91 REMARK 500 ASP A 301 155.52 177.16 REMARK 500 LYS A 302 133.22 165.28 REMARK 500 ASN A 429 17.52 54.27 REMARK 500 ASP A 486 -74.51 -86.98 REMARK 500 ASP A 487 158.50 177.67 REMARK 500 GLU A 503 -149.66 62.78 REMARK 500 LEU A 515 147.56 65.53 REMARK 500 HIS B 9 -103.10 49.02 REMARK 500 ILE B 19 -64.30 -106.99 REMARK 500 ARG B 129 -24.98 87.63 REMARK 500 GLN B 152 -148.02 69.65 REMARK 500 HIS B 155 -24.76 73.62 REMARK 500 ASP B 156 -140.06 -178.60 REMARK 500 PHE B 157 -179.08 76.70 REMARK 500 ARG B 158 144.95 -174.57 REMARK 500 SER B 193 -70.02 -59.32 REMARK 500 SER B 205 168.41 178.43 REMARK 500 ASP B 220 -80.15 -101.62 REMARK 500 LEU B 244 -72.80 -61.61 REMARK 500 ALA B 263 151.72 179.16 REMARK 500 SER B 271 71.18 14.78 REMARK 500 THR B 273 68.39 -115.41 REMARK 500 ARG B 275 -71.13 -56.29 REMARK 500 THR B 293 -79.53 -106.67 REMARK 500 GLN B 354 -135.06 65.06 REMARK 500 GLU B 503 -21.49 77.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 186 THR A 187 129.71 REMARK 500 ILE A 230 ARG A 231 132.83 REMARK 500 SER A 272 THR A 273 130.18 REMARK 500 ARG A 329 ASP A 330 147.71 REMARK 500 VAL B 150 SER B 151 -149.38 REMARK 500 SER B 151 GLN B 152 123.17 REMARK 500 GLN B 257 ALA B 258 123.23 REMARK 500 LEU B 270 SER B 271 118.38 REMARK 500 SER B 271 SER B 272 -140.52 REMARK 500 THR B 273 GLU B 274 142.14 REMARK 500 GLU B 286 GLY B 287 -144.88 REMARK 500 LYS B 302 PRO B 303 -122.99 REMARK 500 HIS B 454 GLN B 455 130.37 REMARK 500 ASP B 486 ASP B 487 -133.50 REMARK 500 ASP B 487 HIS B 488 -142.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 381 SG REMARK 620 2 CYS A 398 SG 99.2 REMARK 620 3 CYS A 401 SG 116.0 113.5 REMARK 620 4 CYS A 404 SG 102.1 118.0 107.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 381 SG REMARK 620 2 CYS B 398 SG 99.6 REMARK 620 3 CYS B 401 SG 116.6 113.7 REMARK 620 4 CYS B 404 SG 102.1 117.7 106.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OYW RELATED DB: PDB REMARK 900 ECRECQ REMARK 900 RELATED ID: 2V1X RELATED DB: PDB REMARK 900 HRECQ1 REMARK 900 RELATED ID: 4Q48 RELATED DB: PDB DBREF 4Q47 A 1 517 UNP Q9RUU2 Q9RUU2_DEIRA 1 517 DBREF 4Q47 B 1 517 UNP Q9RUU2 Q9RUU2_DEIRA 1 517 SEQADV 4Q47 LEU A 518 UNP Q9RUU2 EXPRESSION TAG SEQADV 4Q47 GLU A 519 UNP Q9RUU2 EXPRESSION TAG SEQADV 4Q47 HIS A 520 UNP Q9RUU2 EXPRESSION TAG SEQADV 4Q47 HIS A 521 UNP Q9RUU2 EXPRESSION TAG SEQADV 4Q47 HIS A 522 UNP Q9RUU2 EXPRESSION TAG SEQADV 4Q47 HIS A 523 UNP Q9RUU2 EXPRESSION TAG SEQADV 4Q47 HIS A 524 UNP Q9RUU2 EXPRESSION TAG SEQADV 4Q47 HIS A 525 UNP Q9RUU2 EXPRESSION TAG SEQADV 4Q47 LEU B 518 UNP Q9RUU2 EXPRESSION TAG SEQADV 4Q47 GLU B 519 UNP Q9RUU2 EXPRESSION TAG SEQADV 4Q47 HIS B 520 UNP Q9RUU2 EXPRESSION TAG SEQADV 4Q47 HIS B 521 UNP Q9RUU2 EXPRESSION TAG SEQADV 4Q47 HIS B 522 UNP Q9RUU2 EXPRESSION TAG SEQADV 4Q47 HIS B 523 UNP Q9RUU2 EXPRESSION TAG SEQADV 4Q47 HIS B 524 UNP Q9RUU2 EXPRESSION TAG SEQADV 4Q47 HIS B 525 UNP Q9RUU2 EXPRESSION TAG SEQRES 1 A 525 MET THR ALA ALA PRO ALA ALA LEU HIS ASP ARG ALA LEU SEQRES 2 A 525 HIS LEU LEU GLN THR ILE TRP GLY TYR PRO ALA PHE ARG SEQRES 3 A 525 GLY VAL GLN GLY GLU ILE VAL GLN GLN VAL ALA GLU GLY SEQRES 4 A 525 GLY ASN ALA LEU VAL LEU MET PRO THR GLY GLY GLY LYS SEQRES 5 A 525 SER LEU CYS TYR GLN LEU PRO SER LEU LEU ARG PRO GLY SEQRES 6 A 525 THR GLY ILE VAL VAL SER PRO LEU ILE ALA LEU MET LYS SEQRES 7 A 525 ASP GLN VAL ASP THR LEU ARG GLN ASN GLY VAL ARG ALA SEQRES 8 A 525 ALA PHE LEU ASN SER THR LEU LEU PRO HIS GLU ALA ARG SEQRES 9 A 525 GLU VAL GLU ASP ALA LEU LEU ARG GLY ASP LEU ASP LEU SEQRES 10 A 525 LEU TYR VAL ALA PRO GLU ARG LEU LEU MET PRO ARG THR SEQRES 11 A 525 LEU ASP LEU LEU GLU ARG ALA PRO VAL ALA LEU PHE ALA SEQRES 12 A 525 ILE ASP GLU ALA HIS CYS VAL SER GLN TRP GLY HIS ASP SEQRES 13 A 525 PHE ARG PRO GLU TYR GLN GLN LEU SER VAL LEU ALA GLU SEQRES 14 A 525 ARG PHE PRO GLU LEU PRO ARG VAL ALA LEU THR ALA THR SEQRES 15 A 525 ALA ASP GLU ARG THR ARG ALA ASP ILE LYS SER VAL LEU SEQRES 16 A 525 ARG LEU GLU ASP ALA PRO GLN PHE VAL SER SER PHE ASP SEQRES 17 A 525 ARG PRO ASN ILE GLN TYR ARG VAL GLY LEU LYS ASP SER SEQRES 18 A 525 PRO LYS THR GLN LEU LEU HIS PHE ILE ARG GLU GLU HIS SEQRES 19 A 525 PRO GLY ASP ALA GLY ILE VAL TYR CYS LEU SER ARG LYS SEQRES 20 A 525 SER VAL GLU GLU THR ALA LYS TRP LEU GLN ALA GLN GLY SEQRES 21 A 525 ILE ASP ALA LEU ALA TYR HIS ALA GLY LEU SER SER THR SEQRES 22 A 525 GLU ARG ASN ASN VAL GLN GLU ARG PHE LEU ASN GLU GLU SEQRES 23 A 525 GLY VAL ILE VAL CYS ALA THR VAL ALA PHE GLY MET GLY SEQRES 24 A 525 ILE ASP LYS PRO ASN VAL ARG PHE VAL ALA HIS LEU ASP SEQRES 25 A 525 LEU PRO LYS SER MET GLU GLY TYR TYR GLN GLU THR GLY SEQRES 26 A 525 ARG ALA GLY ARG ASP GLY LEU PRO SER THR ALA TRP MET SEQRES 27 A 525 VAL TYR GLY LEU SER ASP VAL VAL ASN VAL ARG ARG MET SEQRES 28 A 525 LEU ALA GLN SER ASP ALA PRO GLU GLU VAL LYS ARG VAL SEQRES 29 A 525 GLU ALA SER LYS LEU ASP ALA LEU LEU THR TYR CYS GLU SEQRES 30 A 525 ALA ALA THR CYS ARG ARG GLN VAL LEU LEU HIS TYR PHE SEQRES 31 A 525 GLY GLU GLU LEU SER GLU PRO CYS GLY ASN CYS ASP VAL SEQRES 32 A 525 CYS LEU ASN PRO PRO ARG VAL ARG ASP LEU THR ARG GLU SEQRES 33 A 525 ALA GLN MET ALA LEU SER ALA THR ILE ARG THR GLY ASN SEQRES 34 A 525 ARG PHE GLY ALA ALA HIS LEU THR ASP VAL LEU LEU GLY SEQRES 35 A 525 ARG GLU THR ASP LYS VAL LEU ALA GLN GLY HIS HIS GLN SEQRES 36 A 525 LEU PRO THR PHE GLY VAL GLY LYS GLU HIS ASP GLU LYS SEQRES 37 A 525 LEU TRP ARG SER VAL LEU ARG GLN LEU VAL SER LEU GLY SEQRES 38 A 525 TYR LEU SER ALA ASP ASP HIS PHE GLY LEU ARG ALA THR SEQRES 39 A 525 GLY LYS SER ARG GLY ILE LEU LYS GLU GLY GLN LYS LEU SEQRES 40 A 525 LEU LEU ARG GLU ASP THR LEU LEU PRO GLY LEU GLU HIS SEQRES 41 A 525 HIS HIS HIS HIS HIS SEQRES 1 B 525 MET THR ALA ALA PRO ALA ALA LEU HIS ASP ARG ALA LEU SEQRES 2 B 525 HIS LEU LEU GLN THR ILE TRP GLY TYR PRO ALA PHE ARG SEQRES 3 B 525 GLY VAL GLN GLY GLU ILE VAL GLN GLN VAL ALA GLU GLY SEQRES 4 B 525 GLY ASN ALA LEU VAL LEU MET PRO THR GLY GLY GLY LYS SEQRES 5 B 525 SER LEU CYS TYR GLN LEU PRO SER LEU LEU ARG PRO GLY SEQRES 6 B 525 THR GLY ILE VAL VAL SER PRO LEU ILE ALA LEU MET LYS SEQRES 7 B 525 ASP GLN VAL ASP THR LEU ARG GLN ASN GLY VAL ARG ALA SEQRES 8 B 525 ALA PHE LEU ASN SER THR LEU LEU PRO HIS GLU ALA ARG SEQRES 9 B 525 GLU VAL GLU ASP ALA LEU LEU ARG GLY ASP LEU ASP LEU SEQRES 10 B 525 LEU TYR VAL ALA PRO GLU ARG LEU LEU MET PRO ARG THR SEQRES 11 B 525 LEU ASP LEU LEU GLU ARG ALA PRO VAL ALA LEU PHE ALA SEQRES 12 B 525 ILE ASP GLU ALA HIS CYS VAL SER GLN TRP GLY HIS ASP SEQRES 13 B 525 PHE ARG PRO GLU TYR GLN GLN LEU SER VAL LEU ALA GLU SEQRES 14 B 525 ARG PHE PRO GLU LEU PRO ARG VAL ALA LEU THR ALA THR SEQRES 15 B 525 ALA ASP GLU ARG THR ARG ALA ASP ILE LYS SER VAL LEU SEQRES 16 B 525 ARG LEU GLU ASP ALA PRO GLN PHE VAL SER SER PHE ASP SEQRES 17 B 525 ARG PRO ASN ILE GLN TYR ARG VAL GLY LEU LYS ASP SER SEQRES 18 B 525 PRO LYS THR GLN LEU LEU HIS PHE ILE ARG GLU GLU HIS SEQRES 19 B 525 PRO GLY ASP ALA GLY ILE VAL TYR CYS LEU SER ARG LYS SEQRES 20 B 525 SER VAL GLU GLU THR ALA LYS TRP LEU GLN ALA GLN GLY SEQRES 21 B 525 ILE ASP ALA LEU ALA TYR HIS ALA GLY LEU SER SER THR SEQRES 22 B 525 GLU ARG ASN ASN VAL GLN GLU ARG PHE LEU ASN GLU GLU SEQRES 23 B 525 GLY VAL ILE VAL CYS ALA THR VAL ALA PHE GLY MET GLY SEQRES 24 B 525 ILE ASP LYS PRO ASN VAL ARG PHE VAL ALA HIS LEU ASP SEQRES 25 B 525 LEU PRO LYS SER MET GLU GLY TYR TYR GLN GLU THR GLY SEQRES 26 B 525 ARG ALA GLY ARG ASP GLY LEU PRO SER THR ALA TRP MET SEQRES 27 B 525 VAL TYR GLY LEU SER ASP VAL VAL ASN VAL ARG ARG MET SEQRES 28 B 525 LEU ALA GLN SER ASP ALA PRO GLU GLU VAL LYS ARG VAL SEQRES 29 B 525 GLU ALA SER LYS LEU ASP ALA LEU LEU THR TYR CYS GLU SEQRES 30 B 525 ALA ALA THR CYS ARG ARG GLN VAL LEU LEU HIS TYR PHE SEQRES 31 B 525 GLY GLU GLU LEU SER GLU PRO CYS GLY ASN CYS ASP VAL SEQRES 32 B 525 CYS LEU ASN PRO PRO ARG VAL ARG ASP LEU THR ARG GLU SEQRES 33 B 525 ALA GLN MET ALA LEU SER ALA THR ILE ARG THR GLY ASN SEQRES 34 B 525 ARG PHE GLY ALA ALA HIS LEU THR ASP VAL LEU LEU GLY SEQRES 35 B 525 ARG GLU THR ASP LYS VAL LEU ALA GLN GLY HIS HIS GLN SEQRES 36 B 525 LEU PRO THR PHE GLY VAL GLY LYS GLU HIS ASP GLU LYS SEQRES 37 B 525 LEU TRP ARG SER VAL LEU ARG GLN LEU VAL SER LEU GLY SEQRES 38 B 525 TYR LEU SER ALA ASP ASP HIS PHE GLY LEU ARG ALA THR SEQRES 39 B 525 GLY LYS SER ARG GLY ILE LEU LYS GLU GLY GLN LYS LEU SEQRES 40 B 525 LEU LEU ARG GLU ASP THR LEU LEU PRO GLY LEU GLU HIS SEQRES 41 B 525 HIS HIS HIS HIS HIS HET ADP A 601 27 HET ZN A 602 1 HET ADP B 601 27 HET ZN B 602 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM ZN ZINC ION FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 ZN 2(ZN 2+) HELIX 1 1 PRO A 5 GLY A 21 1 17 HELIX 2 2 VAL A 28 GLU A 38 1 11 HELIX 3 3 LYS A 52 ARG A 63 1 12 HELIX 4 4 LEU A 73 ASN A 87 1 15 HELIX 5 5 LEU A 99 ARG A 112 1 14 HELIX 6 6 ALA A 121 MET A 127 1 7 HELIX 7 7 ARG A 129 ARG A 136 1 8 HELIX 8 8 GLU A 146 SER A 151 5 6 HELIX 9 9 GLN A 162 LEU A 164 5 3 HELIX 10 10 SER A 165 PHE A 171 1 7 HELIX 11 11 THR A 187 LEU A 195 1 9 HELIX 12 12 SER A 221 HIS A 234 1 14 HELIX 13 13 SER A 245 GLN A 259 1 15 HELIX 14 14 SER A 271 GLU A 285 1 15 HELIX 15 15 SER A 316 GLY A 325 1 10 HELIX 16 16 GLY A 341 GLN A 354 1 14 HELIX 17 17 PRO A 358 GLU A 377 1 20 HELIX 18 18 CYS A 381 TYR A 389 1 9 HELIX 19 19 CYS A 401 ASN A 406 1 6 HELIX 20 20 LEU A 413 THR A 427 1 15 HELIX 21 21 GLY A 432 GLY A 442 1 11 HELIX 22 22 GLY A 452 LEU A 456 5 5 HELIX 23 23 ASP A 466 LEU A 480 1 15 HELIX 24 24 LYS A 496 LYS A 502 1 7 HELIX 25 25 GLU A 511 LEU A 515 1 5 HELIX 26 26 HIS B 9 GLY B 21 1 13 HELIX 27 27 VAL B 28 GLU B 38 1 11 HELIX 28 28 LYS B 52 ARG B 63 1 12 HELIX 29 29 LEU B 73 ASN B 87 1 15 HELIX 30 30 LEU B 99 ARG B 112 1 14 HELIX 31 31 ALA B 121 LEU B 126 1 6 HELIX 32 32 THR B 130 ARG B 136 1 7 HELIX 33 33 GLU B 146 SER B 151 5 6 HELIX 34 34 PRO B 159 LEU B 164 5 6 HELIX 35 35 SER B 165 PHE B 171 1 7 HELIX 36 36 ASP B 184 LEU B 195 1 12 HELIX 37 37 SER B 221 HIS B 234 1 14 HELIX 38 38 SER B 245 GLN B 257 1 13 HELIX 39 39 GLU B 274 LEU B 283 1 10 HELIX 40 40 SER B 316 GLY B 325 1 10 HELIX 41 41 GLY B 341 LEU B 352 1 12 HELIX 42 42 PRO B 358 GLU B 377 1 20 HELIX 43 43 CYS B 381 TYR B 389 1 9 HELIX 44 44 CYS B 401 ASN B 406 1 6 HELIX 45 45 LEU B 413 THR B 427 1 15 HELIX 46 46 GLY B 432 GLY B 442 1 11 HELIX 47 47 GLY B 452 LEU B 456 5 5 HELIX 48 48 ASP B 466 LEU B 480 1 15 HELIX 49 49 SER B 497 LYS B 502 1 6 SHEET 1 A 7 ALA A 91 LEU A 94 0 SHEET 2 A 7 LEU A 117 VAL A 120 1 O TYR A 119 N ALA A 92 SHEET 3 A 7 THR A 66 VAL A 70 1 N VAL A 69 O VAL A 120 SHEET 4 A 7 VAL A 139 ILE A 144 1 O LEU A 141 N ILE A 68 SHEET 5 A 7 ARG A 176 THR A 180 1 O VAL A 177 N PHE A 142 SHEET 6 A 7 ALA A 42 LEU A 45 1 N VAL A 44 O ALA A 178 SHEET 7 A 7 GLN A 202 VAL A 204 1 O PHE A 203 N LEU A 45 SHEET 1 B 6 ILE A 212 LEU A 218 0 SHEET 2 B 6 SER A 334 TYR A 340 1 O ALA A 336 N GLN A 213 SHEET 3 B 6 PHE A 307 HIS A 310 1 N HIS A 310 O TRP A 337 SHEET 4 B 6 GLY A 239 TYR A 242 1 N TYR A 242 O ALA A 309 SHEET 5 B 6 ILE A 289 ALA A 292 1 O VAL A 290 N VAL A 241 SHEET 6 B 6 ALA A 263 TYR A 266 1 N LEU A 264 O CYS A 291 SHEET 1 C 2 VAL A 410 ASP A 412 0 SHEET 2 C 2 LEU A 508 ARG A 510 -1 O LEU A 509 N ARG A 411 SHEET 1 D 2 LEU A 483 ALA A 485 0 SHEET 2 D 2 LEU A 491 ALA A 493 -1 O ARG A 492 N SER A 484 SHEET 1 E 7 ALA B 91 LEU B 94 0 SHEET 2 E 7 LEU B 117 VAL B 120 1 O TYR B 119 N ALA B 92 SHEET 3 E 7 THR B 66 VAL B 70 1 N GLY B 67 O LEU B 118 SHEET 4 E 7 VAL B 139 ILE B 144 1 O ALA B 143 N ILE B 68 SHEET 5 E 7 ARG B 176 THR B 180 1 O VAL B 177 N ILE B 144 SHEET 6 E 7 ALA B 42 LEU B 45 1 N ALA B 42 O ARG B 176 SHEET 7 E 7 GLN B 202 VAL B 204 1 O PHE B 203 N LEU B 45 SHEET 1 F 6 ILE B 212 LEU B 218 0 SHEET 2 F 6 SER B 334 TYR B 340 1 O ALA B 336 N GLN B 213 SHEET 3 F 6 PHE B 307 HIS B 310 1 N VAL B 308 O TRP B 337 SHEET 4 F 6 GLY B 239 TYR B 242 1 N ILE B 240 O ALA B 309 SHEET 5 F 6 ILE B 289 ALA B 292 1 O VAL B 290 N VAL B 241 SHEET 6 F 6 ALA B 263 ALA B 265 1 N LEU B 264 O CYS B 291 SHEET 1 G 2 VAL B 410 ASP B 412 0 SHEET 2 G 2 LEU B 508 ARG B 510 -1 O LEU B 509 N ARG B 411 SHEET 1 H 2 LEU B 483 ASP B 486 0 SHEET 2 H 2 GLY B 490 ALA B 493 -1 O ARG B 492 N SER B 484 LINK SG CYS A 381 ZN ZN A 602 1555 1555 2.39 LINK SG CYS A 398 ZN ZN A 602 1555 1555 2.37 LINK SG CYS A 401 ZN ZN A 602 1555 1555 2.30 LINK SG CYS A 404 ZN ZN A 602 1555 1555 2.39 LINK SG CYS B 381 ZN ZN B 602 1555 1555 2.38 LINK SG CYS B 398 ZN ZN B 602 1555 1555 2.37 LINK SG CYS B 401 ZN ZN B 602 1555 1555 2.30 LINK SG CYS B 404 ZN ZN B 602 1555 1555 2.41 CISPEP 1 ASP A 487 HIS A 488 0 -15.23 CISPEP 2 GLY A 517 LEU A 518 0 -20.20 CISPEP 3 ASN B 284 GLU B 285 0 -14.43 CISPEP 4 SER B 355 ASP B 356 0 -2.51 CISPEP 5 ASP B 512 THR B 513 0 24.85 SITE 1 AC1 10 TYR A 22 ALA A 24 PHE A 25 ARG A 26 SITE 2 AC1 10 GLN A 29 GLY A 49 GLY A 50 GLY A 51 SITE 3 AC1 10 LYS A 52 SER A 53 SITE 1 AC2 4 CYS A 381 CYS A 398 CYS A 401 CYS A 404 SITE 1 AC3 10 TYR B 22 ALA B 24 ARG B 26 GLN B 29 SITE 2 AC3 10 THR B 48 GLY B 49 GLY B 50 GLY B 51 SITE 3 AC3 10 LYS B 52 SER B 53 SITE 1 AC4 5 CYS B 381 CYS B 398 GLY B 399 CYS B 401 SITE 2 AC4 5 CYS B 404 CRYST1 84.756 95.610 183.832 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011799 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010459 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005440 0.00000