data_4Q4F # _entry.id 4Q4F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4Q4F pdb_00004q4f 10.2210/pdb4q4f/pdb RCSB RCSB085590 ? ? WWPDB D_1000085590 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4Q4B _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4Q4F _pdbx_database_status.recvd_initial_deposition_date 2014-04-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhao, Y.' 1 'Ren, J.' 2 'Padilla-Parra, S.' 3 'Fry, L.E.' 4 'Stuart, D.I.' 5 # _citation.id primary _citation.title 'Lysosome sorting of beta-glucocerebrosidase by LIMP-2 is targeted by the mannose 6-phosphate receptor.' _citation.journal_abbrev 'Nat Commun' _citation.journal_volume 5 _citation.page_first 4321 _citation.page_last 4321 _citation.year 2014 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 2041-1723 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25027712 _citation.pdbx_database_id_DOI 10.1038/ncomms5321 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhao, Y.' 1 ? primary 'Ren, J.' 2 ? primary 'Padilla-Parra, S.' 3 ? primary 'Fry, E.E.' 4 ? primary 'Stuart, D.I.' 5 ? # _cell.entry_id 4Q4F _cell.length_a 89.686 _cell.length_b 63.386 _cell.length_c 114.375 _cell.angle_alpha 90.00 _cell.angle_beta 102.27 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4Q4F _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Lysosome membrane protein 2' 47727.750 1 ? ? 'Human Limp-2 luminal domain' ? 2 branched man ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; 910.823 2 ? ? ? ? 3 branched man ;alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; 1072.964 1 ? ? ? ? 4 branched man 'beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 586.542 1 ? ? ? ? 5 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ? ? ? ? 6 branched man ;6-O-phosphono-beta-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; 1315.085 1 ? ? ? ? 7 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 2 ? ? ? ? 8 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;85 kDa lysosomal membrane sialoglycoprotein, LGP85, CD36 antigen-like 2, Lysosome membrane protein II, LIMP II, Scavenger receptor class B member 2 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ETGVFQKAVDQSIEKKIVLRNGTEAFDSWEKPPLPVYTQFYFFNVTNPEEILRGETPRVEEVGPYTYRELRNKANIQFGD NGTTISAVSNKAYVFERDQSVGDPKIDLIRTLNIPVLTVIEWSQVHFLREIIEAMLKAYQQKLFVTHTVDELLWGYKDEI LSLIHVFRPDISPYFGLFYEKNGTNDGDYVFLTGEDSYLNFTKIVEWNGKTSLDWWITDKCNMINGTDGDSFHPLITKDE VLYVFPSDFCRSVYITFSDYESVQGLPAFRYKVPAEILANTSDNAGFCIPEGNCLGSGVLNVSICKNGAPIIMSFPHFYQ ADERFVSAIEGMHPNQEDHETFVDINPLTGIILKAAKRFQINIYVKKLDDFVETGDIRTMVFPVMYLNESVHIDKETASR LKSMINTTGKHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;ETGVFQKAVDQSIEKKIVLRNGTEAFDSWEKPPLPVYTQFYFFNVTNPEEILRGETPRVEEVGPYTYRELRNKANIQFGD NGTTISAVSNKAYVFERDQSVGDPKIDLIRTLNIPVLTVIEWSQVHFLREIIEAMLKAYQQKLFVTHTVDELLWGYKDEI LSLIHVFRPDISPYFGLFYEKNGTNDGDYVFLTGEDSYLNFTKIVEWNGKTSLDWWITDKCNMINGTDGDSFHPLITKDE VLYVFPSDFCRSVYITFSDYESVQGLPAFRYKVPAEILANTSDNAGFCIPEGNCLGSGVLNVSICKNGAPIIMSFPHFYQ ADERFVSAIEGMHPNQEDHETFVDINPLTGIILKAAKRFQINIYVKKLDDFVETGDIRTMVFPVMYLNESVHIDKETASR LKSMINTTGKHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 THR n 1 3 GLY n 1 4 VAL n 1 5 PHE n 1 6 GLN n 1 7 LYS n 1 8 ALA n 1 9 VAL n 1 10 ASP n 1 11 GLN n 1 12 SER n 1 13 ILE n 1 14 GLU n 1 15 LYS n 1 16 LYS n 1 17 ILE n 1 18 VAL n 1 19 LEU n 1 20 ARG n 1 21 ASN n 1 22 GLY n 1 23 THR n 1 24 GLU n 1 25 ALA n 1 26 PHE n 1 27 ASP n 1 28 SER n 1 29 TRP n 1 30 GLU n 1 31 LYS n 1 32 PRO n 1 33 PRO n 1 34 LEU n 1 35 PRO n 1 36 VAL n 1 37 TYR n 1 38 THR n 1 39 GLN n 1 40 PHE n 1 41 TYR n 1 42 PHE n 1 43 PHE n 1 44 ASN n 1 45 VAL n 1 46 THR n 1 47 ASN n 1 48 PRO n 1 49 GLU n 1 50 GLU n 1 51 ILE n 1 52 LEU n 1 53 ARG n 1 54 GLY n 1 55 GLU n 1 56 THR n 1 57 PRO n 1 58 ARG n 1 59 VAL n 1 60 GLU n 1 61 GLU n 1 62 VAL n 1 63 GLY n 1 64 PRO n 1 65 TYR n 1 66 THR n 1 67 TYR n 1 68 ARG n 1 69 GLU n 1 70 LEU n 1 71 ARG n 1 72 ASN n 1 73 LYS n 1 74 ALA n 1 75 ASN n 1 76 ILE n 1 77 GLN n 1 78 PHE n 1 79 GLY n 1 80 ASP n 1 81 ASN n 1 82 GLY n 1 83 THR n 1 84 THR n 1 85 ILE n 1 86 SER n 1 87 ALA n 1 88 VAL n 1 89 SER n 1 90 ASN n 1 91 LYS n 1 92 ALA n 1 93 TYR n 1 94 VAL n 1 95 PHE n 1 96 GLU n 1 97 ARG n 1 98 ASP n 1 99 GLN n 1 100 SER n 1 101 VAL n 1 102 GLY n 1 103 ASP n 1 104 PRO n 1 105 LYS n 1 106 ILE n 1 107 ASP n 1 108 LEU n 1 109 ILE n 1 110 ARG n 1 111 THR n 1 112 LEU n 1 113 ASN n 1 114 ILE n 1 115 PRO n 1 116 VAL n 1 117 LEU n 1 118 THR n 1 119 VAL n 1 120 ILE n 1 121 GLU n 1 122 TRP n 1 123 SER n 1 124 GLN n 1 125 VAL n 1 126 HIS n 1 127 PHE n 1 128 LEU n 1 129 ARG n 1 130 GLU n 1 131 ILE n 1 132 ILE n 1 133 GLU n 1 134 ALA n 1 135 MET n 1 136 LEU n 1 137 LYS n 1 138 ALA n 1 139 TYR n 1 140 GLN n 1 141 GLN n 1 142 LYS n 1 143 LEU n 1 144 PHE n 1 145 VAL n 1 146 THR n 1 147 HIS n 1 148 THR n 1 149 VAL n 1 150 ASP n 1 151 GLU n 1 152 LEU n 1 153 LEU n 1 154 TRP n 1 155 GLY n 1 156 TYR n 1 157 LYS n 1 158 ASP n 1 159 GLU n 1 160 ILE n 1 161 LEU n 1 162 SER n 1 163 LEU n 1 164 ILE n 1 165 HIS n 1 166 VAL n 1 167 PHE n 1 168 ARG n 1 169 PRO n 1 170 ASP n 1 171 ILE n 1 172 SER n 1 173 PRO n 1 174 TYR n 1 175 PHE n 1 176 GLY n 1 177 LEU n 1 178 PHE n 1 179 TYR n 1 180 GLU n 1 181 LYS n 1 182 ASN n 1 183 GLY n 1 184 THR n 1 185 ASN n 1 186 ASP n 1 187 GLY n 1 188 ASP n 1 189 TYR n 1 190 VAL n 1 191 PHE n 1 192 LEU n 1 193 THR n 1 194 GLY n 1 195 GLU n 1 196 ASP n 1 197 SER n 1 198 TYR n 1 199 LEU n 1 200 ASN n 1 201 PHE n 1 202 THR n 1 203 LYS n 1 204 ILE n 1 205 VAL n 1 206 GLU n 1 207 TRP n 1 208 ASN n 1 209 GLY n 1 210 LYS n 1 211 THR n 1 212 SER n 1 213 LEU n 1 214 ASP n 1 215 TRP n 1 216 TRP n 1 217 ILE n 1 218 THR n 1 219 ASP n 1 220 LYS n 1 221 CYS n 1 222 ASN n 1 223 MET n 1 224 ILE n 1 225 ASN n 1 226 GLY n 1 227 THR n 1 228 ASP n 1 229 GLY n 1 230 ASP n 1 231 SER n 1 232 PHE n 1 233 HIS n 1 234 PRO n 1 235 LEU n 1 236 ILE n 1 237 THR n 1 238 LYS n 1 239 ASP n 1 240 GLU n 1 241 VAL n 1 242 LEU n 1 243 TYR n 1 244 VAL n 1 245 PHE n 1 246 PRO n 1 247 SER n 1 248 ASP n 1 249 PHE n 1 250 CYS n 1 251 ARG n 1 252 SER n 1 253 VAL n 1 254 TYR n 1 255 ILE n 1 256 THR n 1 257 PHE n 1 258 SER n 1 259 ASP n 1 260 TYR n 1 261 GLU n 1 262 SER n 1 263 VAL n 1 264 GLN n 1 265 GLY n 1 266 LEU n 1 267 PRO n 1 268 ALA n 1 269 PHE n 1 270 ARG n 1 271 TYR n 1 272 LYS n 1 273 VAL n 1 274 PRO n 1 275 ALA n 1 276 GLU n 1 277 ILE n 1 278 LEU n 1 279 ALA n 1 280 ASN n 1 281 THR n 1 282 SER n 1 283 ASP n 1 284 ASN n 1 285 ALA n 1 286 GLY n 1 287 PHE n 1 288 CYS n 1 289 ILE n 1 290 PRO n 1 291 GLU n 1 292 GLY n 1 293 ASN n 1 294 CYS n 1 295 LEU n 1 296 GLY n 1 297 SER n 1 298 GLY n 1 299 VAL n 1 300 LEU n 1 301 ASN n 1 302 VAL n 1 303 SER n 1 304 ILE n 1 305 CYS n 1 306 LYS n 1 307 ASN n 1 308 GLY n 1 309 ALA n 1 310 PRO n 1 311 ILE n 1 312 ILE n 1 313 MET n 1 314 SER n 1 315 PHE n 1 316 PRO n 1 317 HIS n 1 318 PHE n 1 319 TYR n 1 320 GLN n 1 321 ALA n 1 322 ASP n 1 323 GLU n 1 324 ARG n 1 325 PHE n 1 326 VAL n 1 327 SER n 1 328 ALA n 1 329 ILE n 1 330 GLU n 1 331 GLY n 1 332 MET n 1 333 HIS n 1 334 PRO n 1 335 ASN n 1 336 GLN n 1 337 GLU n 1 338 ASP n 1 339 HIS n 1 340 GLU n 1 341 THR n 1 342 PHE n 1 343 VAL n 1 344 ASP n 1 345 ILE n 1 346 ASN n 1 347 PRO n 1 348 LEU n 1 349 THR n 1 350 GLY n 1 351 ILE n 1 352 ILE n 1 353 LEU n 1 354 LYS n 1 355 ALA n 1 356 ALA n 1 357 LYS n 1 358 ARG n 1 359 PHE n 1 360 GLN n 1 361 ILE n 1 362 ASN n 1 363 ILE n 1 364 TYR n 1 365 VAL n 1 366 LYS n 1 367 LYS n 1 368 LEU n 1 369 ASP n 1 370 ASP n 1 371 PHE n 1 372 VAL n 1 373 GLU n 1 374 THR n 1 375 GLY n 1 376 ASP n 1 377 ILE n 1 378 ARG n 1 379 THR n 1 380 MET n 1 381 VAL n 1 382 PHE n 1 383 PRO n 1 384 VAL n 1 385 MET n 1 386 TYR n 1 387 LEU n 1 388 ASN n 1 389 GLU n 1 390 SER n 1 391 VAL n 1 392 HIS n 1 393 ILE n 1 394 ASP n 1 395 LYS n 1 396 GLU n 1 397 THR n 1 398 ALA n 1 399 SER n 1 400 ARG n 1 401 LEU n 1 402 LYS n 1 403 SER n 1 404 MET n 1 405 ILE n 1 406 ASN n 1 407 THR n 1 408 THR n 1 409 GLY n 1 410 LYS n 1 411 HIS n 1 412 HIS n 1 413 HIS n 1 414 HIS n 1 415 HIS n 1 416 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'SCARB2, CD36L2, LIMP2, LIMPII' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'homo sapiens' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line 'HEK 293S GNTI-' _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pNeoSec _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SCRB2_HUMAN _struct_ref.pdbx_db_accession Q14108 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VFQKAVDQSIEKKIVLRNGTEAFDSWEKPPLPVYTQFYFFNVTNPEEILRGETPRVEEVGPYTYRELRNKANIQFGDNGT TISAVSNKAYVFERDQSVGDPKIDLIRTLNIPVLTVIEWSQVHFLREIIEAMLKAYQQKLFVTHTVDELLWGYKDEILSL IHVFRPDISPYFGLFYEKNGTNDGDYVFLTGEDSYLNFTKIVEWNGKTSLDWWITDKCNMINGTDGDSFHPLITKDEVLY VFPSDFCRSVYITFSDYESVQGLPAFRYKVPAEILANTSDNAGFCIPEGNCLGSGVLNVSICKNGAPIIMSFPHFYQADE RFVSAIEGMHPNQEDHETFVDINPLTGIILKAAKRFQINIYVKKLDDFVETGDIRTMVFPVMYLNESVHIDKETASRLKS MINTT ; _struct_ref.pdbx_align_begin 28 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4Q4F _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 408 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q14108 _struct_ref_seq.db_align_beg 28 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 432 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 28 _struct_ref_seq.pdbx_auth_seq_align_end 432 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4Q4F GLU A 1 ? UNP Q14108 ? ? 'expression tag' 25 1 1 4Q4F THR A 2 ? UNP Q14108 ? ? 'expression tag' 26 2 1 4Q4F GLY A 3 ? UNP Q14108 ? ? 'expression tag' 27 3 1 4Q4F GLY A 409 ? UNP Q14108 ? ? 'expression tag' 433 4 1 4Q4F LYS A 410 ? UNP Q14108 ? ? 'expression tag' 434 5 1 4Q4F HIS A 411 ? UNP Q14108 ? ? 'expression tag' 435 6 1 4Q4F HIS A 412 ? UNP Q14108 ? ? 'expression tag' 436 7 1 4Q4F HIS A 413 ? UNP Q14108 ? ? 'expression tag' 437 8 1 4Q4F HIS A 414 ? UNP Q14108 ? ? 'expression tag' 438 9 1 4Q4F HIS A 415 ? UNP Q14108 ? ? 'expression tag' 439 10 1 4Q4F HIS A 416 ? UNP Q14108 ? ? 'expression tag' 440 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 M6D 'D-saccharide, beta linking' n 6-O-phosphono-beta-D-mannopyranose 'beta-D-mannose-6-phosphate; 6-O-phosphono-beta-D-mannose; 6-O-phosphono-D-mannose; 6-O-phosphono-mannose' 'C6 H13 O9 P' 260.136 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4Q4F _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.33 _exptl_crystal.density_percent_sol 63.04 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;30 %w/v Polyethylene Glycol 8000, 0.2 M Ammonium Sulphate, 0.1 M Sodium Cacodylate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'PSI PILATUS 6M' _diffrn_detector.pdbx_collection_date 2012-07-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9686 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I24' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I24 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9686 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4Q4F _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.8 _reflns.number_obs 15244 _reflns.number_all ? _reflns.percent_possible_obs 96.2 _reflns.pdbx_Rmerge_I_obs 0.119 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 7.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.90 _reflns_shell.percent_possible_all 91.5 _reflns_shell.Rmerge_I_obs 0.378 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.8 _reflns_shell.pdbx_redundancy 2.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4Q4F _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 14450 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.00 _refine.ls_d_res_high 2.8 _refine.ls_percent_reflns_obs 93.93 _refine.ls_R_factor_obs 0.21979 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21727 _refine.ls_R_factor_R_free 0.26957 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 763 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.931 _refine.correlation_coeff_Fo_to_Fc_free 0.885 _refine.B_iso_mean 71.184 _refine.aniso_B[1][1] 0.83 _refine.aniso_B[2][2] -2.76 _refine.aniso_B[3][3] 1.13 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] 1.62 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'pdb entry 4Q4B' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 2.797 _refine.pdbx_overall_ESU_R_Free 0.385 _refine.overall_SU_ML 0.386 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 46.978 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3191 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 377 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 3568 _refine_hist.d_res_high 2.8 _refine_hist.d_res_low 50.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.005 0.020 ? 3682 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 3307 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.232 2.072 ? 5049 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.708 3.000 ? 7581 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.439 5.000 ? 393 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.843 24.568 ? 162 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.222 15.000 ? 546 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12.789 15.000 ? 15 'X-RAY DIFFRACTION' ? r_chiral_restr 0.065 0.200 ? 630 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.021 ? 3798 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 777 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.142 4.439 ? 1575 'X-RAY DIFFRACTION' ? r_mcbond_other 1.139 4.437 ? 1574 'X-RAY DIFFRACTION' ? r_mcangle_it 1.938 6.654 ? 1967 'X-RAY DIFFRACTION' ? r_mcangle_other 2.015 7.206 ? 1968 'X-RAY DIFFRACTION' ? r_scbond_it 1.323 4.864 ? 2106 'X-RAY DIFFRACTION' ? r_scbond_other 1.438 5.259 ? 2063 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other 2.461 7.842 ? 3033 'X-RAY DIFFRACTION' ? r_long_range_B_refined 3.798 40.542 ? 3931 'X-RAY DIFFRACTION' ? r_long_range_B_other 3.798 40.555 ? 3932 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.768 _refine_ls_shell.d_res_low 2.840 _refine_ls_shell.number_reflns_R_work 684 _refine_ls_shell.R_factor_R_work 0.350 _refine_ls_shell.percent_reflns_obs 61.82 _refine_ls_shell.R_factor_R_free 0.344 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 35 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 4Q4F _struct.title 'Crystal structure of LIMP-2 (space group C2)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4Q4F _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.text 'Lysosomal targeting, beta-glucocerebrosidase, CI-MPR, ER, endosome, lysosome, CELL ADHESION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 2 ? H N N 7 ? I N N 7 ? J N N 8 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 23 ? LYS A 31 ? THR A 47 LYS A 55 1 ? 9 HELX_P HELX_P2 2 ASN A 47 ? ARG A 53 ? ASN A 71 ARG A 77 1 ? 7 HELX_P HELX_P3 3 ARG A 97 ? SER A 100 ? ARG A 121 SER A 124 5 ? 4 HELX_P HELX_P4 4 ASN A 113 ? VAL A 125 ? ASN A 137 VAL A 149 1 ? 13 HELX_P HELX_P5 5 LEU A 128 ? TYR A 139 ? LEU A 152 TYR A 163 1 ? 12 HELX_P HELX_P6 6 VAL A 149 ? GLY A 155 ? VAL A 173 GLY A 179 1 ? 7 HELX_P HELX_P7 7 ASP A 158 ? ARG A 168 ? ASP A 182 ARG A 192 1 ? 11 HELX_P HELX_P8 8 SER A 197 ? PHE A 201 ? SER A 221 PHE A 225 5 ? 5 HELX_P HELX_P9 9 PRO A 246 ? CYS A 250 ? PRO A 270 CYS A 274 5 ? 5 HELX_P HELX_P10 10 PRO A 274 ? ALA A 279 ? PRO A 298 ALA A 303 5 ? 6 HELX_P HELX_P11 11 SER A 282 ? CYS A 288 ? SER A 306 CYS A 312 5 ? 7 HELX_P HELX_P12 12 PRO A 316 ? TYR A 319 ? PRO A 340 TYR A 343 5 ? 4 HELX_P HELX_P13 13 ASP A 322 ? ILE A 329 ? ASP A 346 ILE A 353 1 ? 8 HELX_P HELX_P14 14 ASN A 335 ? GLU A 340 ? ASN A 359 GLU A 364 1 ? 6 HELX_P HELX_P15 15 PHE A 371 ? GLY A 375 ? PHE A 395 GLY A 399 5 ? 5 HELX_P HELX_P16 16 ASP A 394 ? ILE A 405 ? ASP A 418 ILE A 429 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 250 SG ? ? ? 1_555 A CYS 305 SG ? ? A CYS 274 A CYS 329 1_555 ? ? ? ? ? ? ? 2.040 ? ? disulf2 disulf ? ? A CYS 288 SG ? ? ? 1_555 A CYS 294 SG ? ? A CYS 312 A CYS 318 1_555 ? ? ? ? ? ? ? 2.038 ? ? covale1 covale one ? A ASN 21 ND2 ? ? ? 1_555 H NAG . C1 ? ? A ASN 45 A NAG 501 1_555 ? ? ? ? ? ? ? 1.454 ? N-Glycosylation covale2 covale one ? A ASN 44 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 68 B NAG 1 1_555 ? ? ? ? ? ? ? 1.445 ? N-Glycosylation covale3 covale one ? A ASN 182 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 206 C NAG 1 1_555 ? ? ? ? ? ? ? 1.436 ? N-Glycosylation covale4 covale one ? A ASN 200 ND2 ? ? ? 1_555 I NAG . C1 ? ? A ASN 224 A NAG 513 1_555 ? ? ? ? ? ? ? 1.451 ? N-Glycosylation covale5 covale one ? A ASN 225 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 249 D NAG 1 1_555 ? ? ? ? ? ? ? 1.449 ? N-Glycosylation covale6 covale one ? A ASN 280 ND2 ? ? ? 1_555 E NAG . C1 ? ? A ASN 304 E NAG 1 1_555 ? ? ? ? ? ? ? 1.454 ? N-Glycosylation covale7 covale one ? A ASN 301 ND2 ? ? ? 1_555 F NAG . C1 ? ? A ASN 325 F NAG 1 1_555 ? ? ? ? ? ? ? 1.435 ? N-Glycosylation covale8 covale one ? A ASN 388 ND2 ? ? ? 1_555 G NAG . C1 ? ? A ASN 412 G NAG 1 1_555 ? ? ? ? ? ? ? 1.455 ? N-Glycosylation covale9 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.432 ? ? covale10 covale both ? B NAG . O4 ? ? ? 1_555 B BMA . C1 ? ? B NAG 2 B BMA 3 1_555 ? ? ? ? ? ? ? 1.436 ? ? covale11 covale both ? B BMA . O3 ? ? ? 1_555 B MAN . C1 ? ? B BMA 3 B MAN 4 1_555 ? ? ? ? ? ? ? 1.441 ? ? covale12 covale both ? B BMA . O6 ? ? ? 1_555 B MAN . C1 ? ? B BMA 3 B MAN 5 1_555 ? ? ? ? ? ? ? 1.440 ? ? covale13 covale both ? C NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.435 ? ? covale14 covale both ? C NAG . O4 ? ? ? 1_555 C BMA . C1 ? ? C NAG 2 C BMA 3 1_555 ? ? ? ? ? ? ? 1.432 ? ? covale15 covale both ? C BMA . O6 ? ? ? 1_555 C MAN . C1 ? ? C BMA 3 C MAN 4 1_555 ? ? ? ? ? ? ? 1.438 ? ? covale16 covale both ? C BMA . O3 ? ? ? 1_555 C MAN . C1 ? ? C BMA 3 C MAN 6 1_555 ? ? ? ? ? ? ? 1.444 ? ? covale17 covale both ? C MAN . O3 ? ? ? 1_555 C MAN . C1 ? ? C MAN 4 C MAN 5 1_555 ? ? ? ? ? ? ? 1.446 ? ? covale18 covale both ? D NAG . O4 ? ? ? 1_555 D NAG . C1 ? ? D NAG 1 D NAG 2 1_555 ? ? ? ? ? ? ? 1.440 ? ? covale19 covale both ? D NAG . O4 ? ? ? 1_555 D BMA . C1 ? ? D NAG 2 D BMA 3 1_555 ? ? ? ? ? ? ? 1.459 ? ? covale20 covale both ? E NAG . O4 ? ? ? 1_555 E NAG . C1 ? ? E NAG 1 E NAG 2 1_555 ? ? ? ? ? ? ? 1.447 ? ? covale21 covale both ? F NAG . O4 ? ? ? 1_555 F NAG . C1 ? ? F NAG 1 F NAG 2 1_555 ? ? ? ? ? ? ? 1.440 ? ? covale22 covale both ? F NAG . O4 ? ? ? 1_555 F BMA . C1 ? ? F NAG 2 F BMA 3 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale23 covale both ? F BMA . O6 ? ? ? 1_555 F MAN . C1 ? ? F BMA 3 F MAN 4 1_555 ? ? ? ? ? ? ? 1.440 ? ? covale24 covale both ? F BMA . O3 ? ? ? 1_555 F MAN . C1 ? ? F BMA 3 F MAN 7 1_555 ? ? ? ? ? ? ? 1.443 ? ? covale25 covale both ? F MAN . O6 ? ? ? 1_555 F MAN . C1 ? ? F MAN 4 F MAN 5 1_555 ? ? ? ? ? ? ? 1.442 ? ? covale26 covale both ? F MAN . O2 ? ? ? 1_555 F M6D . C1 ? ? F MAN 5 F M6D 6 1_555 ? ? ? ? ? ? ? 1.450 ? ? covale27 covale both ? G NAG . O4 ? ? ? 1_555 G NAG . C1 ? ? G NAG 1 G NAG 2 1_555 ? ? ? ? ? ? ? 1.444 ? ? covale28 covale both ? G NAG . O4 ? ? ? 1_555 G BMA . C1 ? ? G NAG 2 G BMA 3 1_555 ? ? ? ? ? ? ? 1.435 ? ? covale29 covale both ? G BMA . O3 ? ? ? 1_555 G MAN . C1 ? ? G BMA 3 G MAN 4 1_555 ? ? ? ? ? ? ? 1.435 ? ? covale30 covale both ? G BMA . O6 ? ? ? 1_555 G MAN . C1 ? ? G BMA 3 G MAN 5 1_555 ? ? ? ? ? ? ? 1.445 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 63 A . ? GLY 87 A PRO 64 A ? PRO 88 A 1 3.85 2 ILE 289 A . ? ILE 313 A PRO 290 A ? PRO 314 A 1 2.54 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 11 ? B ? 9 ? C ? 2 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel A 10 11 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel B 8 9 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 203 ? TRP A 207 ? LYS A 227 TRP A 231 A 2 TYR A 189 ? LEU A 192 ? TYR A 213 LEU A 216 A 3 THR A 84 ? PHE A 95 ? THR A 108 PHE A 119 A 4 VAL A 59 ? GLY A 79 ? VAL A 83 GLY A 103 A 5 VAL A 36 ? VAL A 45 ? VAL A 60 VAL A 69 A 6 MET A 380 ? HIS A 392 ? MET A 404 HIS A 416 A 7 ILE A 351 ? VAL A 365 ? ILE A 375 VAL A 389 A 8 PHE A 342 ? ASN A 346 ? PHE A 366 ASN A 370 A 9 LEU A 266 ? LYS A 272 ? LEU A 290 LYS A 296 A 10 VAL A 253 ? VAL A 263 ? VAL A 277 VAL A 287 A 11 LEU A 242 ? VAL A 244 ? LEU A 266 VAL A 268 B 1 LYS A 203 ? TRP A 207 ? LYS A 227 TRP A 231 B 2 TYR A 189 ? LEU A 192 ? TYR A 213 LEU A 216 B 3 THR A 84 ? PHE A 95 ? THR A 108 PHE A 119 B 4 VAL A 59 ? GLY A 79 ? VAL A 83 GLY A 103 B 5 VAL A 36 ? VAL A 45 ? VAL A 60 VAL A 69 B 6 MET A 380 ? HIS A 392 ? MET A 404 HIS A 416 B 7 ILE A 351 ? VAL A 365 ? ILE A 375 VAL A 389 B 8 ILE A 311 ? SER A 314 ? ILE A 335 SER A 338 B 9 VAL A 299 ? ASN A 301 ? VAL A 323 ASN A 325 C 1 LEU A 108 ? LEU A 112 ? LEU A 132 LEU A 136 C 2 PHE A 144 ? THR A 148 ? PHE A 168 THR A 172 D 1 TYR A 156 ? LYS A 157 ? TYR A 180 LYS A 181 D 2 TYR A 174 ? PHE A 175 ? TYR A 198 PHE A 199 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LYS A 203 ? O LYS A 227 N LEU A 192 ? N LEU A 216 A 2 3 O PHE A 191 ? O PHE A 215 N ILE A 85 ? N ILE A 109 A 3 4 O VAL A 94 ? O VAL A 118 N ARG A 68 ? N ARG A 92 A 4 5 O GLU A 69 ? O GLU A 93 N VAL A 36 ? N VAL A 60 A 5 6 N TYR A 37 ? N TYR A 61 O SER A 390 ? O SER A 414 A 6 7 O PHE A 382 ? O PHE A 406 N ILE A 363 ? N ILE A 387 A 7 8 O LYS A 354 ? O LYS A 378 N ASP A 344 ? N ASP A 368 A 8 9 O ILE A 345 ? O ILE A 369 N PHE A 269 ? N PHE A 293 A 9 10 O ARG A 270 ? O ARG A 294 N SER A 258 ? N SER A 282 A 10 11 O VAL A 253 ? O VAL A 277 N VAL A 244 ? N VAL A 268 B 1 2 O LYS A 203 ? O LYS A 227 N LEU A 192 ? N LEU A 216 B 2 3 O PHE A 191 ? O PHE A 215 N ILE A 85 ? N ILE A 109 B 3 4 O VAL A 94 ? O VAL A 118 N ARG A 68 ? N ARG A 92 B 4 5 O GLU A 69 ? O GLU A 93 N VAL A 36 ? N VAL A 60 B 5 6 N TYR A 37 ? N TYR A 61 O SER A 390 ? O SER A 414 B 6 7 O PHE A 382 ? O PHE A 406 N ILE A 363 ? N ILE A 387 B 7 8 O GLN A 360 ? O GLN A 384 N SER A 314 ? N SER A 338 B 8 9 O MET A 313 ? O MET A 337 N LEU A 300 ? N LEU A 324 C 1 2 N ILE A 109 ? N ILE A 133 O HIS A 147 ? O HIS A 171 D 1 2 N TYR A 156 ? N TYR A 180 O PHE A 175 ? O PHE A 199 # _database_PDB_matrix.entry_id 4Q4F _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4Q4F _atom_sites.fract_transf_matrix[1][1] 0.011150 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002425 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015776 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008948 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 25 ? ? ? A . n A 1 2 THR 2 26 ? ? ? A . n A 1 3 GLY 3 27 ? ? ? A . n A 1 4 VAL 4 28 ? ? ? A . n A 1 5 PHE 5 29 ? ? ? A . n A 1 6 GLN 6 30 ? ? ? A . n A 1 7 LYS 7 31 ? ? ? A . n A 1 8 ALA 8 32 ? ? ? A . n A 1 9 VAL 9 33 ? ? ? A . n A 1 10 ASP 10 34 ? ? ? A . n A 1 11 GLN 11 35 ? ? ? A . n A 1 12 SER 12 36 ? ? ? A . n A 1 13 ILE 13 37 37 ILE ILE A . n A 1 14 GLU 14 38 38 GLU GLU A . n A 1 15 LYS 15 39 39 LYS LYS A . n A 1 16 LYS 16 40 40 LYS LYS A . n A 1 17 ILE 17 41 41 ILE ILE A . n A 1 18 VAL 18 42 42 VAL VAL A . n A 1 19 LEU 19 43 43 LEU LEU A . n A 1 20 ARG 20 44 44 ARG ARG A . n A 1 21 ASN 21 45 45 ASN ASN A . n A 1 22 GLY 22 46 46 GLY GLY A . n A 1 23 THR 23 47 47 THR THR A . n A 1 24 GLU 24 48 48 GLU GLU A . n A 1 25 ALA 25 49 49 ALA ALA A . n A 1 26 PHE 26 50 50 PHE PHE A . n A 1 27 ASP 27 51 51 ASP ASP A . n A 1 28 SER 28 52 52 SER SER A . n A 1 29 TRP 29 53 53 TRP TRP A . n A 1 30 GLU 30 54 54 GLU GLU A . n A 1 31 LYS 31 55 55 LYS LYS A . n A 1 32 PRO 32 56 56 PRO PRO A . n A 1 33 PRO 33 57 57 PRO PRO A . n A 1 34 LEU 34 58 58 LEU LEU A . n A 1 35 PRO 35 59 59 PRO PRO A . n A 1 36 VAL 36 60 60 VAL VAL A . n A 1 37 TYR 37 61 61 TYR TYR A . n A 1 38 THR 38 62 62 THR THR A . n A 1 39 GLN 39 63 63 GLN GLN A . n A 1 40 PHE 40 64 64 PHE PHE A . n A 1 41 TYR 41 65 65 TYR TYR A . n A 1 42 PHE 42 66 66 PHE PHE A . n A 1 43 PHE 43 67 67 PHE PHE A . n A 1 44 ASN 44 68 68 ASN ASN A . n A 1 45 VAL 45 69 69 VAL VAL A . n A 1 46 THR 46 70 70 THR THR A . n A 1 47 ASN 47 71 71 ASN ASN A . n A 1 48 PRO 48 72 72 PRO PRO A . n A 1 49 GLU 49 73 73 GLU GLU A . n A 1 50 GLU 50 74 74 GLU GLU A . n A 1 51 ILE 51 75 75 ILE ILE A . n A 1 52 LEU 52 76 76 LEU LEU A . n A 1 53 ARG 53 77 77 ARG ARG A . n A 1 54 GLY 54 78 78 GLY GLY A . n A 1 55 GLU 55 79 79 GLU GLU A . n A 1 56 THR 56 80 80 THR THR A . n A 1 57 PRO 57 81 81 PRO PRO A . n A 1 58 ARG 58 82 82 ARG ARG A . n A 1 59 VAL 59 83 83 VAL VAL A . n A 1 60 GLU 60 84 84 GLU GLU A . n A 1 61 GLU 61 85 85 GLU GLU A . n A 1 62 VAL 62 86 86 VAL VAL A . n A 1 63 GLY 63 87 87 GLY GLY A . n A 1 64 PRO 64 88 88 PRO PRO A . n A 1 65 TYR 65 89 89 TYR TYR A . n A 1 66 THR 66 90 90 THR THR A . n A 1 67 TYR 67 91 91 TYR TYR A . n A 1 68 ARG 68 92 92 ARG ARG A . n A 1 69 GLU 69 93 93 GLU GLU A . n A 1 70 LEU 70 94 94 LEU LEU A . n A 1 71 ARG 71 95 95 ARG ARG A . n A 1 72 ASN 72 96 96 ASN ASN A . n A 1 73 LYS 73 97 97 LYS LYS A . n A 1 74 ALA 74 98 98 ALA ALA A . n A 1 75 ASN 75 99 99 ASN ASN A . n A 1 76 ILE 76 100 100 ILE ILE A . n A 1 77 GLN 77 101 101 GLN GLN A . n A 1 78 PHE 78 102 102 PHE PHE A . n A 1 79 GLY 79 103 103 GLY GLY A . n A 1 80 ASP 80 104 104 ASP ASP A . n A 1 81 ASN 81 105 105 ASN ASN A . n A 1 82 GLY 82 106 106 GLY GLY A . n A 1 83 THR 83 107 107 THR THR A . n A 1 84 THR 84 108 108 THR THR A . n A 1 85 ILE 85 109 109 ILE ILE A . n A 1 86 SER 86 110 110 SER SER A . n A 1 87 ALA 87 111 111 ALA ALA A . n A 1 88 VAL 88 112 112 VAL VAL A . n A 1 89 SER 89 113 113 SER SER A . n A 1 90 ASN 90 114 114 ASN ASN A . n A 1 91 LYS 91 115 115 LYS LYS A . n A 1 92 ALA 92 116 116 ALA ALA A . n A 1 93 TYR 93 117 117 TYR TYR A . n A 1 94 VAL 94 118 118 VAL VAL A . n A 1 95 PHE 95 119 119 PHE PHE A . n A 1 96 GLU 96 120 120 GLU GLU A . n A 1 97 ARG 97 121 121 ARG ARG A . n A 1 98 ASP 98 122 122 ASP ASP A . n A 1 99 GLN 99 123 123 GLN GLN A . n A 1 100 SER 100 124 124 SER SER A . n A 1 101 VAL 101 125 125 VAL VAL A . n A 1 102 GLY 102 126 126 GLY GLY A . n A 1 103 ASP 103 127 127 ASP ASP A . n A 1 104 PRO 104 128 128 PRO PRO A . n A 1 105 LYS 105 129 129 LYS LYS A . n A 1 106 ILE 106 130 130 ILE ILE A . n A 1 107 ASP 107 131 131 ASP ASP A . n A 1 108 LEU 108 132 132 LEU LEU A . n A 1 109 ILE 109 133 133 ILE ILE A . n A 1 110 ARG 110 134 134 ARG ARG A . n A 1 111 THR 111 135 135 THR THR A . n A 1 112 LEU 112 136 136 LEU LEU A . n A 1 113 ASN 113 137 137 ASN ASN A . n A 1 114 ILE 114 138 138 ILE ILE A . n A 1 115 PRO 115 139 139 PRO PRO A . n A 1 116 VAL 116 140 140 VAL VAL A . n A 1 117 LEU 117 141 141 LEU LEU A . n A 1 118 THR 118 142 142 THR THR A . n A 1 119 VAL 119 143 143 VAL VAL A . n A 1 120 ILE 120 144 144 ILE ILE A . n A 1 121 GLU 121 145 145 GLU GLU A . n A 1 122 TRP 122 146 146 TRP TRP A . n A 1 123 SER 123 147 147 SER SER A . n A 1 124 GLN 124 148 148 GLN GLN A . n A 1 125 VAL 125 149 149 VAL VAL A . n A 1 126 HIS 126 150 150 HIS HIS A . n A 1 127 PHE 127 151 151 PHE PHE A . n A 1 128 LEU 128 152 152 LEU LEU A . n A 1 129 ARG 129 153 153 ARG ARG A . n A 1 130 GLU 130 154 154 GLU GLU A . n A 1 131 ILE 131 155 155 ILE ILE A . n A 1 132 ILE 132 156 156 ILE ILE A . n A 1 133 GLU 133 157 157 GLU GLU A . n A 1 134 ALA 134 158 158 ALA ALA A . n A 1 135 MET 135 159 159 MET MET A . n A 1 136 LEU 136 160 160 LEU LEU A . n A 1 137 LYS 137 161 161 LYS LYS A . n A 1 138 ALA 138 162 162 ALA ALA A . n A 1 139 TYR 139 163 163 TYR TYR A . n A 1 140 GLN 140 164 164 GLN GLN A . n A 1 141 GLN 141 165 165 GLN GLN A . n A 1 142 LYS 142 166 166 LYS LYS A . n A 1 143 LEU 143 167 167 LEU LEU A . n A 1 144 PHE 144 168 168 PHE PHE A . n A 1 145 VAL 145 169 169 VAL VAL A . n A 1 146 THR 146 170 170 THR THR A . n A 1 147 HIS 147 171 171 HIS HIS A . n A 1 148 THR 148 172 172 THR THR A . n A 1 149 VAL 149 173 173 VAL VAL A . n A 1 150 ASP 150 174 174 ASP ASP A . n A 1 151 GLU 151 175 175 GLU GLU A . n A 1 152 LEU 152 176 176 LEU LEU A . n A 1 153 LEU 153 177 177 LEU LEU A . n A 1 154 TRP 154 178 178 TRP TRP A . n A 1 155 GLY 155 179 179 GLY GLY A . n A 1 156 TYR 156 180 180 TYR TYR A . n A 1 157 LYS 157 181 181 LYS LYS A . n A 1 158 ASP 158 182 182 ASP ASP A . n A 1 159 GLU 159 183 183 GLU GLU A . n A 1 160 ILE 160 184 184 ILE ILE A . n A 1 161 LEU 161 185 185 LEU LEU A . n A 1 162 SER 162 186 186 SER SER A . n A 1 163 LEU 163 187 187 LEU LEU A . n A 1 164 ILE 164 188 188 ILE ILE A . n A 1 165 HIS 165 189 189 HIS HIS A . n A 1 166 VAL 166 190 190 VAL VAL A . n A 1 167 PHE 167 191 191 PHE PHE A . n A 1 168 ARG 168 192 192 ARG ARG A . n A 1 169 PRO 169 193 193 PRO PRO A . n A 1 170 ASP 170 194 194 ASP ASP A . n A 1 171 ILE 171 195 195 ILE ILE A . n A 1 172 SER 172 196 196 SER SER A . n A 1 173 PRO 173 197 197 PRO PRO A . n A 1 174 TYR 174 198 198 TYR TYR A . n A 1 175 PHE 175 199 199 PHE PHE A . n A 1 176 GLY 176 200 200 GLY GLY A . n A 1 177 LEU 177 201 201 LEU LEU A . n A 1 178 PHE 178 202 202 PHE PHE A . n A 1 179 TYR 179 203 203 TYR TYR A . n A 1 180 GLU 180 204 204 GLU GLU A . n A 1 181 LYS 181 205 205 LYS LYS A . n A 1 182 ASN 182 206 206 ASN ASN A . n A 1 183 GLY 183 207 207 GLY GLY A . n A 1 184 THR 184 208 208 THR THR A . n A 1 185 ASN 185 209 209 ASN ASN A . n A 1 186 ASP 186 210 210 ASP ASP A . n A 1 187 GLY 187 211 211 GLY GLY A . n A 1 188 ASP 188 212 212 ASP ASP A . n A 1 189 TYR 189 213 213 TYR TYR A . n A 1 190 VAL 190 214 214 VAL VAL A . n A 1 191 PHE 191 215 215 PHE PHE A . n A 1 192 LEU 192 216 216 LEU LEU A . n A 1 193 THR 193 217 217 THR THR A . n A 1 194 GLY 194 218 218 GLY GLY A . n A 1 195 GLU 195 219 219 GLU GLU A . n A 1 196 ASP 196 220 220 ASP ASP A . n A 1 197 SER 197 221 221 SER SER A . n A 1 198 TYR 198 222 222 TYR TYR A . n A 1 199 LEU 199 223 223 LEU LEU A . n A 1 200 ASN 200 224 224 ASN ASN A . n A 1 201 PHE 201 225 225 PHE PHE A . n A 1 202 THR 202 226 226 THR THR A . n A 1 203 LYS 203 227 227 LYS LYS A . n A 1 204 ILE 204 228 228 ILE ILE A . n A 1 205 VAL 205 229 229 VAL VAL A . n A 1 206 GLU 206 230 230 GLU GLU A . n A 1 207 TRP 207 231 231 TRP TRP A . n A 1 208 ASN 208 232 232 ASN ASN A . n A 1 209 GLY 209 233 233 GLY GLY A . n A 1 210 LYS 210 234 234 LYS LYS A . n A 1 211 THR 211 235 235 THR THR A . n A 1 212 SER 212 236 236 SER SER A . n A 1 213 LEU 213 237 237 LEU LEU A . n A 1 214 ASP 214 238 238 ASP ASP A . n A 1 215 TRP 215 239 239 TRP TRP A . n A 1 216 TRP 216 240 240 TRP TRP A . n A 1 217 ILE 217 241 241 ILE ILE A . n A 1 218 THR 218 242 242 THR THR A . n A 1 219 ASP 219 243 243 ASP ASP A . n A 1 220 LYS 220 244 244 LYS LYS A . n A 1 221 CYS 221 245 245 CYS CYS A . n A 1 222 ASN 222 246 246 ASN ASN A . n A 1 223 MET 223 247 247 MET MET A . n A 1 224 ILE 224 248 248 ILE ILE A . n A 1 225 ASN 225 249 249 ASN ASN A . n A 1 226 GLY 226 250 250 GLY GLY A . n A 1 227 THR 227 251 251 THR THR A . n A 1 228 ASP 228 252 252 ASP ASP A . n A 1 229 GLY 229 253 253 GLY GLY A . n A 1 230 ASP 230 254 254 ASP ASP A . n A 1 231 SER 231 255 255 SER SER A . n A 1 232 PHE 232 256 256 PHE PHE A . n A 1 233 HIS 233 257 257 HIS HIS A . n A 1 234 PRO 234 258 258 PRO PRO A . n A 1 235 LEU 235 259 259 LEU LEU A . n A 1 236 ILE 236 260 260 ILE ILE A . n A 1 237 THR 237 261 261 THR THR A . n A 1 238 LYS 238 262 262 LYS LYS A . n A 1 239 ASP 239 263 263 ASP ASP A . n A 1 240 GLU 240 264 264 GLU GLU A . n A 1 241 VAL 241 265 265 VAL VAL A . n A 1 242 LEU 242 266 266 LEU LEU A . n A 1 243 TYR 243 267 267 TYR TYR A . n A 1 244 VAL 244 268 268 VAL VAL A . n A 1 245 PHE 245 269 269 PHE PHE A . n A 1 246 PRO 246 270 270 PRO PRO A . n A 1 247 SER 247 271 271 SER SER A . n A 1 248 ASP 248 272 272 ASP ASP A . n A 1 249 PHE 249 273 273 PHE PHE A . n A 1 250 CYS 250 274 274 CYS CYS A . n A 1 251 ARG 251 275 275 ARG ARG A . n A 1 252 SER 252 276 276 SER SER A . n A 1 253 VAL 253 277 277 VAL VAL A . n A 1 254 TYR 254 278 278 TYR TYR A . n A 1 255 ILE 255 279 279 ILE ILE A . n A 1 256 THR 256 280 280 THR THR A . n A 1 257 PHE 257 281 281 PHE PHE A . n A 1 258 SER 258 282 282 SER SER A . n A 1 259 ASP 259 283 283 ASP ASP A . n A 1 260 TYR 260 284 284 TYR TYR A . n A 1 261 GLU 261 285 285 GLU GLU A . n A 1 262 SER 262 286 286 SER SER A . n A 1 263 VAL 263 287 287 VAL VAL A . n A 1 264 GLN 264 288 288 GLN GLN A . n A 1 265 GLY 265 289 289 GLY GLY A . n A 1 266 LEU 266 290 290 LEU LEU A . n A 1 267 PRO 267 291 291 PRO PRO A . n A 1 268 ALA 268 292 292 ALA ALA A . n A 1 269 PHE 269 293 293 PHE PHE A . n A 1 270 ARG 270 294 294 ARG ARG A . n A 1 271 TYR 271 295 295 TYR TYR A . n A 1 272 LYS 272 296 296 LYS LYS A . n A 1 273 VAL 273 297 297 VAL VAL A . n A 1 274 PRO 274 298 298 PRO PRO A . n A 1 275 ALA 275 299 299 ALA ALA A . n A 1 276 GLU 276 300 300 GLU GLU A . n A 1 277 ILE 277 301 301 ILE ILE A . n A 1 278 LEU 278 302 302 LEU LEU A . n A 1 279 ALA 279 303 303 ALA ALA A . n A 1 280 ASN 280 304 304 ASN ASN A . n A 1 281 THR 281 305 305 THR THR A . n A 1 282 SER 282 306 306 SER SER A . n A 1 283 ASP 283 307 307 ASP ASP A . n A 1 284 ASN 284 308 308 ASN ASN A . n A 1 285 ALA 285 309 309 ALA ALA A . n A 1 286 GLY 286 310 310 GLY GLY A . n A 1 287 PHE 287 311 311 PHE PHE A . n A 1 288 CYS 288 312 312 CYS CYS A . n A 1 289 ILE 289 313 313 ILE ILE A . n A 1 290 PRO 290 314 314 PRO PRO A . n A 1 291 GLU 291 315 315 GLU GLU A . n A 1 292 GLY 292 316 316 GLY GLY A . n A 1 293 ASN 293 317 317 ASN ASN A . n A 1 294 CYS 294 318 318 CYS CYS A . n A 1 295 LEU 295 319 319 LEU LEU A . n A 1 296 GLY 296 320 320 GLY GLY A . n A 1 297 SER 297 321 321 SER SER A . n A 1 298 GLY 298 322 322 GLY GLY A . n A 1 299 VAL 299 323 323 VAL VAL A . n A 1 300 LEU 300 324 324 LEU LEU A . n A 1 301 ASN 301 325 325 ASN ASN A . n A 1 302 VAL 302 326 326 VAL VAL A . n A 1 303 SER 303 327 327 SER SER A . n A 1 304 ILE 304 328 328 ILE ILE A . n A 1 305 CYS 305 329 329 CYS CYS A . n A 1 306 LYS 306 330 330 LYS LYS A . n A 1 307 ASN 307 331 331 ASN ASN A . n A 1 308 GLY 308 332 332 GLY GLY A . n A 1 309 ALA 309 333 333 ALA ALA A . n A 1 310 PRO 310 334 334 PRO PRO A . n A 1 311 ILE 311 335 335 ILE ILE A . n A 1 312 ILE 312 336 336 ILE ILE A . n A 1 313 MET 313 337 337 MET MET A . n A 1 314 SER 314 338 338 SER SER A . n A 1 315 PHE 315 339 339 PHE PHE A . n A 1 316 PRO 316 340 340 PRO PRO A . n A 1 317 HIS 317 341 341 HIS HIS A . n A 1 318 PHE 318 342 342 PHE PHE A . n A 1 319 TYR 319 343 343 TYR TYR A . n A 1 320 GLN 320 344 344 GLN GLN A . n A 1 321 ALA 321 345 345 ALA ALA A . n A 1 322 ASP 322 346 346 ASP ASP A . n A 1 323 GLU 323 347 347 GLU GLU A . n A 1 324 ARG 324 348 348 ARG ARG A . n A 1 325 PHE 325 349 349 PHE PHE A . n A 1 326 VAL 326 350 350 VAL VAL A . n A 1 327 SER 327 351 351 SER SER A . n A 1 328 ALA 328 352 352 ALA ALA A . n A 1 329 ILE 329 353 353 ILE ILE A . n A 1 330 GLU 330 354 354 GLU GLU A . n A 1 331 GLY 331 355 355 GLY GLY A . n A 1 332 MET 332 356 356 MET MET A . n A 1 333 HIS 333 357 357 HIS HIS A . n A 1 334 PRO 334 358 358 PRO PRO A . n A 1 335 ASN 335 359 359 ASN ASN A . n A 1 336 GLN 336 360 360 GLN GLN A . n A 1 337 GLU 337 361 361 GLU GLU A . n A 1 338 ASP 338 362 362 ASP ASP A . n A 1 339 HIS 339 363 363 HIS HIS A . n A 1 340 GLU 340 364 364 GLU GLU A . n A 1 341 THR 341 365 365 THR THR A . n A 1 342 PHE 342 366 366 PHE PHE A . n A 1 343 VAL 343 367 367 VAL VAL A . n A 1 344 ASP 344 368 368 ASP ASP A . n A 1 345 ILE 345 369 369 ILE ILE A . n A 1 346 ASN 346 370 370 ASN ASN A . n A 1 347 PRO 347 371 371 PRO PRO A . n A 1 348 LEU 348 372 372 LEU LEU A . n A 1 349 THR 349 373 373 THR THR A . n A 1 350 GLY 350 374 374 GLY GLY A . n A 1 351 ILE 351 375 375 ILE ILE A . n A 1 352 ILE 352 376 376 ILE ILE A . n A 1 353 LEU 353 377 377 LEU LEU A . n A 1 354 LYS 354 378 378 LYS LYS A . n A 1 355 ALA 355 379 379 ALA ALA A . n A 1 356 ALA 356 380 380 ALA ALA A . n A 1 357 LYS 357 381 381 LYS LYS A . n A 1 358 ARG 358 382 382 ARG ARG A . n A 1 359 PHE 359 383 383 PHE PHE A . n A 1 360 GLN 360 384 384 GLN GLN A . n A 1 361 ILE 361 385 385 ILE ILE A . n A 1 362 ASN 362 386 386 ASN ASN A . n A 1 363 ILE 363 387 387 ILE ILE A . n A 1 364 TYR 364 388 388 TYR TYR A . n A 1 365 VAL 365 389 389 VAL VAL A . n A 1 366 LYS 366 390 390 LYS LYS A . n A 1 367 LYS 367 391 391 LYS LYS A . n A 1 368 LEU 368 392 392 LEU LEU A . n A 1 369 ASP 369 393 393 ASP ASP A . n A 1 370 ASP 370 394 394 ASP ASP A . n A 1 371 PHE 371 395 395 PHE PHE A . n A 1 372 VAL 372 396 396 VAL VAL A . n A 1 373 GLU 373 397 397 GLU GLU A . n A 1 374 THR 374 398 398 THR THR A . n A 1 375 GLY 375 399 399 GLY GLY A . n A 1 376 ASP 376 400 400 ASP ASP A . n A 1 377 ILE 377 401 401 ILE ILE A . n A 1 378 ARG 378 402 402 ARG ARG A . n A 1 379 THR 379 403 403 THR THR A . n A 1 380 MET 380 404 404 MET MET A . n A 1 381 VAL 381 405 405 VAL VAL A . n A 1 382 PHE 382 406 406 PHE PHE A . n A 1 383 PRO 383 407 407 PRO PRO A . n A 1 384 VAL 384 408 408 VAL VAL A . n A 1 385 MET 385 409 409 MET MET A . n A 1 386 TYR 386 410 410 TYR TYR A . n A 1 387 LEU 387 411 411 LEU LEU A . n A 1 388 ASN 388 412 412 ASN ASN A . n A 1 389 GLU 389 413 413 GLU GLU A . n A 1 390 SER 390 414 414 SER SER A . n A 1 391 VAL 391 415 415 VAL VAL A . n A 1 392 HIS 392 416 416 HIS HIS A . n A 1 393 ILE 393 417 417 ILE ILE A . n A 1 394 ASP 394 418 418 ASP ASP A . n A 1 395 LYS 395 419 419 LYS LYS A . n A 1 396 GLU 396 420 420 GLU GLU A . n A 1 397 THR 397 421 421 THR THR A . n A 1 398 ALA 398 422 422 ALA ALA A . n A 1 399 SER 399 423 423 SER SER A . n A 1 400 ARG 400 424 424 ARG ARG A . n A 1 401 LEU 401 425 425 LEU LEU A . n A 1 402 LYS 402 426 426 LYS LYS A . n A 1 403 SER 403 427 427 SER SER A . n A 1 404 MET 404 428 428 MET MET A . n A 1 405 ILE 405 429 429 ILE ILE A . n A 1 406 ASN 406 430 430 ASN ASN A . n A 1 407 THR 407 431 ? ? ? A . n A 1 408 THR 408 432 ? ? ? A . n A 1 409 GLY 409 433 ? ? ? A . n A 1 410 LYS 410 434 ? ? ? A . n A 1 411 HIS 411 435 ? ? ? A . n A 1 412 HIS 412 436 ? ? ? A . n A 1 413 HIS 413 437 ? ? ? A . n A 1 414 HIS 414 438 ? ? ? A . n A 1 415 HIS 415 439 ? ? ? A . n A 1 416 HIS 416 440 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code H 7 NAG 1 501 501 NAG NAG A . I 7 NAG 1 513 561 NAG NAG A . J 8 CL 1 531 1 CL CL A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 301 A ASN 325 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 182 A ASN 206 ? ASN 'GLYCOSYLATION SITE' 3 A ASN 44 A ASN 68 ? ASN 'GLYCOSYLATION SITE' 4 A ASN 225 A ASN 249 ? ASN 'GLYCOSYLATION SITE' 5 A ASN 200 A ASN 224 ? ASN 'GLYCOSYLATION SITE' 6 A ASN 280 A ASN 304 ? ASN 'GLYCOSYLATION SITE' 7 A ASN 21 A ASN 45 ? ASN 'GLYCOSYLATION SITE' 8 A ASN 388 A ASN 412 ? ASN 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-07-30 2 'Structure model' 2 0 2020-07-29 3 'Structure model' 2 1 2023-09-20 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Data collection' 3 2 'Structure model' 'Database references' 4 2 'Structure model' 'Derived calculations' 5 2 'Structure model' 'Structure summary' 6 3 'Structure model' 'Data collection' 7 3 'Structure model' 'Database references' 8 3 'Structure model' 'Refinement description' 9 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' atom_site_anisotrop 3 2 'Structure model' chem_comp 4 2 'Structure model' entity 5 2 'Structure model' pdbx_branch_scheme 6 2 'Structure model' pdbx_chem_comp_identifier 7 2 'Structure model' pdbx_entity_branch 8 2 'Structure model' pdbx_entity_branch_descriptor 9 2 'Structure model' pdbx_entity_branch_link 10 2 'Structure model' pdbx_entity_branch_list 11 2 'Structure model' pdbx_entity_nonpoly 12 2 'Structure model' pdbx_nonpoly_scheme 13 2 'Structure model' pdbx_struct_assembly_gen 14 2 'Structure model' struct_asym 15 2 'Structure model' struct_conn 16 2 'Structure model' struct_ref_seq_dif 17 2 'Structure model' struct_site 18 2 'Structure model' struct_site_gen 19 3 'Structure model' chem_comp 20 3 'Structure model' chem_comp_atom 21 3 'Structure model' chem_comp_bond 22 3 'Structure model' database_2 23 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site.B_iso_or_equiv' 2 2 'Structure model' '_atom_site.Cartn_x' 3 2 'Structure model' '_atom_site.Cartn_y' 4 2 'Structure model' '_atom_site.Cartn_z' 5 2 'Structure model' '_atom_site.auth_asym_id' 6 2 'Structure model' '_atom_site.auth_atom_id' 7 2 'Structure model' '_atom_site.auth_comp_id' 8 2 'Structure model' '_atom_site.auth_seq_id' 9 2 'Structure model' '_atom_site.label_asym_id' 10 2 'Structure model' '_atom_site.label_atom_id' 11 2 'Structure model' '_atom_site.label_comp_id' 12 2 'Structure model' '_atom_site.label_entity_id' 13 2 'Structure model' '_atom_site.type_symbol' 14 2 'Structure model' '_atom_site_anisotrop.U[1][1]' 15 2 'Structure model' '_atom_site_anisotrop.U[1][2]' 16 2 'Structure model' '_atom_site_anisotrop.U[1][3]' 17 2 'Structure model' '_atom_site_anisotrop.U[2][2]' 18 2 'Structure model' '_atom_site_anisotrop.U[2][3]' 19 2 'Structure model' '_atom_site_anisotrop.U[3][3]' 20 2 'Structure model' '_atom_site_anisotrop.pdbx_auth_asym_id' 21 2 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 22 2 'Structure model' '_atom_site_anisotrop.pdbx_auth_comp_id' 23 2 'Structure model' '_atom_site_anisotrop.pdbx_auth_seq_id' 24 2 'Structure model' '_atom_site_anisotrop.pdbx_label_asym_id' 25 2 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 26 2 'Structure model' '_atom_site_anisotrop.pdbx_label_comp_id' 27 2 'Structure model' '_atom_site_anisotrop.type_symbol' 28 2 'Structure model' '_chem_comp.mon_nstd_flag' 29 2 'Structure model' '_chem_comp.name' 30 2 'Structure model' '_chem_comp.type' 31 2 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 32 2 'Structure model' '_struct_conn.pdbx_dist_value' 33 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 34 2 'Structure model' '_struct_conn.pdbx_role' 35 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 36 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 37 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 38 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 39 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 40 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 41 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 42 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 43 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 44 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 45 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 46 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 47 2 'Structure model' '_struct_ref_seq_dif.details' 48 3 'Structure model' '_chem_comp.pdbx_synonyms' 49 3 'Structure model' '_database_2.pdbx_DOI' 50 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 26.230 _pdbx_refine_tls.origin_y -0.531 _pdbx_refine_tls.origin_z 29.489 _pdbx_refine_tls.T[1][1] 0.0646 _pdbx_refine_tls.T[2][2] 0.0060 _pdbx_refine_tls.T[3][3] 0.4576 _pdbx_refine_tls.T[1][2] 0.0013 _pdbx_refine_tls.T[1][3] -0.0714 _pdbx_refine_tls.T[2][3] -0.0362 _pdbx_refine_tls.L[1][1] 0.9607 _pdbx_refine_tls.L[2][2] 2.0260 _pdbx_refine_tls.L[3][3] 1.8582 _pdbx_refine_tls.L[1][2] 0.2783 _pdbx_refine_tls.L[1][3] 0.0408 _pdbx_refine_tls.L[2][3] -0.6268 _pdbx_refine_tls.S[1][1] -0.0744 _pdbx_refine_tls.S[2][2] 0.0460 _pdbx_refine_tls.S[3][3] 0.0283 _pdbx_refine_tls.S[1][2] 0.0315 _pdbx_refine_tls.S[1][3] 0.0679 _pdbx_refine_tls.S[2][3] 0.1519 _pdbx_refine_tls.S[2][1] -0.2500 _pdbx_refine_tls.S[3][1] -0.1425 _pdbx_refine_tls.S[3][2] -0.0450 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 37 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 430 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal GDA 'data collection' . ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.8.0069 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 45 ? ? -59.86 102.29 2 1 ASN A 105 ? ? 45.05 72.78 3 1 ASN A 224 ? ? -92.59 47.92 4 1 THR A 226 ? ? 37.06 28.18 5 1 ASP A 238 ? ? -151.29 4.59 6 1 LYS A 262 ? ? -34.20 -33.43 7 1 GLN A 288 ? ? 57.50 -138.87 8 1 CYS A 312 ? ? -105.80 65.85 9 1 LYS A 330 ? ? -99.70 33.95 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 25 ? A GLU 1 2 1 Y 1 A THR 26 ? A THR 2 3 1 Y 1 A GLY 27 ? A GLY 3 4 1 Y 1 A VAL 28 ? A VAL 4 5 1 Y 1 A PHE 29 ? A PHE 5 6 1 Y 1 A GLN 30 ? A GLN 6 7 1 Y 1 A LYS 31 ? A LYS 7 8 1 Y 1 A ALA 32 ? A ALA 8 9 1 Y 1 A VAL 33 ? A VAL 9 10 1 Y 1 A ASP 34 ? A ASP 10 11 1 Y 1 A GLN 35 ? A GLN 11 12 1 Y 1 A SER 36 ? A SER 12 13 1 Y 1 A THR 431 ? A THR 407 14 1 Y 1 A THR 432 ? A THR 408 15 1 Y 1 A GLY 433 ? A GLY 409 16 1 Y 1 A LYS 434 ? A LYS 410 17 1 Y 1 A HIS 435 ? A HIS 411 18 1 Y 1 A HIS 436 ? A HIS 412 19 1 Y 1 A HIS 437 ? A HIS 413 20 1 Y 1 A HIS 438 ? A HIS 414 21 1 Y 1 A HIS 439 ? A HIS 415 22 1 Y 1 A HIS 440 ? A HIS 416 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BMA C1 C N R 74 BMA C2 C N S 75 BMA C3 C N S 76 BMA C4 C N S 77 BMA C5 C N R 78 BMA C6 C N N 79 BMA O1 O N N 80 BMA O2 O N N 81 BMA O3 O N N 82 BMA O4 O N N 83 BMA O5 O N N 84 BMA O6 O N N 85 BMA H1 H N N 86 BMA H2 H N N 87 BMA H3 H N N 88 BMA H4 H N N 89 BMA H5 H N N 90 BMA H61 H N N 91 BMA H62 H N N 92 BMA HO1 H N N 93 BMA HO2 H N N 94 BMA HO3 H N N 95 BMA HO4 H N N 96 BMA HO6 H N N 97 CL CL CL N N 98 CYS N N N N 99 CYS CA C N R 100 CYS C C N N 101 CYS O O N N 102 CYS CB C N N 103 CYS SG S N N 104 CYS OXT O N N 105 CYS H H N N 106 CYS H2 H N N 107 CYS HA H N N 108 CYS HB2 H N N 109 CYS HB3 H N N 110 CYS HG H N N 111 CYS HXT H N N 112 GLN N N N N 113 GLN CA C N S 114 GLN C C N N 115 GLN O O N N 116 GLN CB C N N 117 GLN CG C N N 118 GLN CD C N N 119 GLN OE1 O N N 120 GLN NE2 N N N 121 GLN OXT O N N 122 GLN H H N N 123 GLN H2 H N N 124 GLN HA H N N 125 GLN HB2 H N N 126 GLN HB3 H N N 127 GLN HG2 H N N 128 GLN HG3 H N N 129 GLN HE21 H N N 130 GLN HE22 H N N 131 GLN HXT H N N 132 GLU N N N N 133 GLU CA C N S 134 GLU C C N N 135 GLU O O N N 136 GLU CB C N N 137 GLU CG C N N 138 GLU CD C N N 139 GLU OE1 O N N 140 GLU OE2 O N N 141 GLU OXT O N N 142 GLU H H N N 143 GLU H2 H N N 144 GLU HA H N N 145 GLU HB2 H N N 146 GLU HB3 H N N 147 GLU HG2 H N N 148 GLU HG3 H N N 149 GLU HE2 H N N 150 GLU HXT H N N 151 GLY N N N N 152 GLY CA C N N 153 GLY C C N N 154 GLY O O N N 155 GLY OXT O N N 156 GLY H H N N 157 GLY H2 H N N 158 GLY HA2 H N N 159 GLY HA3 H N N 160 GLY HXT H N N 161 HIS N N N N 162 HIS CA C N S 163 HIS C C N N 164 HIS O O N N 165 HIS CB C N N 166 HIS CG C Y N 167 HIS ND1 N Y N 168 HIS CD2 C Y N 169 HIS CE1 C Y N 170 HIS NE2 N Y N 171 HIS OXT O N N 172 HIS H H N N 173 HIS H2 H N N 174 HIS HA H N N 175 HIS HB2 H N N 176 HIS HB3 H N N 177 HIS HD1 H N N 178 HIS HD2 H N N 179 HIS HE1 H N N 180 HIS HE2 H N N 181 HIS HXT H N N 182 ILE N N N N 183 ILE CA C N S 184 ILE C C N N 185 ILE O O N N 186 ILE CB C N S 187 ILE CG1 C N N 188 ILE CG2 C N N 189 ILE CD1 C N N 190 ILE OXT O N N 191 ILE H H N N 192 ILE H2 H N N 193 ILE HA H N N 194 ILE HB H N N 195 ILE HG12 H N N 196 ILE HG13 H N N 197 ILE HG21 H N N 198 ILE HG22 H N N 199 ILE HG23 H N N 200 ILE HD11 H N N 201 ILE HD12 H N N 202 ILE HD13 H N N 203 ILE HXT H N N 204 LEU N N N N 205 LEU CA C N S 206 LEU C C N N 207 LEU O O N N 208 LEU CB C N N 209 LEU CG C N N 210 LEU CD1 C N N 211 LEU CD2 C N N 212 LEU OXT O N N 213 LEU H H N N 214 LEU H2 H N N 215 LEU HA H N N 216 LEU HB2 H N N 217 LEU HB3 H N N 218 LEU HG H N N 219 LEU HD11 H N N 220 LEU HD12 H N N 221 LEU HD13 H N N 222 LEU HD21 H N N 223 LEU HD22 H N N 224 LEU HD23 H N N 225 LEU HXT H N N 226 LYS N N N N 227 LYS CA C N S 228 LYS C C N N 229 LYS O O N N 230 LYS CB C N N 231 LYS CG C N N 232 LYS CD C N N 233 LYS CE C N N 234 LYS NZ N N N 235 LYS OXT O N N 236 LYS H H N N 237 LYS H2 H N N 238 LYS HA H N N 239 LYS HB2 H N N 240 LYS HB3 H N N 241 LYS HG2 H N N 242 LYS HG3 H N N 243 LYS HD2 H N N 244 LYS HD3 H N N 245 LYS HE2 H N N 246 LYS HE3 H N N 247 LYS HZ1 H N N 248 LYS HZ2 H N N 249 LYS HZ3 H N N 250 LYS HXT H N N 251 M6D C1 C N R 252 M6D C2 C N S 253 M6D C3 C N S 254 M6D C4 C N S 255 M6D C5 C N R 256 M6D C6 C N N 257 M6D O1 O N N 258 M6D O2 O N N 259 M6D O3 O N N 260 M6D O4 O N N 261 M6D O5 O N N 262 M6D O6 O N N 263 M6D P P N N 264 M6D O1P O N N 265 M6D O2P O N N 266 M6D O3P O N N 267 M6D H1 H N N 268 M6D H2 H N N 269 M6D H3 H N N 270 M6D H4 H N N 271 M6D H5 H N N 272 M6D H61 H N N 273 M6D H62 H N N 274 M6D HO1 H N N 275 M6D HO2 H N N 276 M6D HO3 H N N 277 M6D HO4 H N N 278 M6D HO1P H N N 279 M6D HO2P H N N 280 MAN C1 C N S 281 MAN C2 C N S 282 MAN C3 C N S 283 MAN C4 C N S 284 MAN C5 C N R 285 MAN C6 C N N 286 MAN O1 O N N 287 MAN O2 O N N 288 MAN O3 O N N 289 MAN O4 O N N 290 MAN O5 O N N 291 MAN O6 O N N 292 MAN H1 H N N 293 MAN H2 H N N 294 MAN H3 H N N 295 MAN H4 H N N 296 MAN H5 H N N 297 MAN H61 H N N 298 MAN H62 H N N 299 MAN HO1 H N N 300 MAN HO2 H N N 301 MAN HO3 H N N 302 MAN HO4 H N N 303 MAN HO6 H N N 304 MET N N N N 305 MET CA C N S 306 MET C C N N 307 MET O O N N 308 MET CB C N N 309 MET CG C N N 310 MET SD S N N 311 MET CE C N N 312 MET OXT O N N 313 MET H H N N 314 MET H2 H N N 315 MET HA H N N 316 MET HB2 H N N 317 MET HB3 H N N 318 MET HG2 H N N 319 MET HG3 H N N 320 MET HE1 H N N 321 MET HE2 H N N 322 MET HE3 H N N 323 MET HXT H N N 324 NAG C1 C N R 325 NAG C2 C N R 326 NAG C3 C N R 327 NAG C4 C N S 328 NAG C5 C N R 329 NAG C6 C N N 330 NAG C7 C N N 331 NAG C8 C N N 332 NAG N2 N N N 333 NAG O1 O N N 334 NAG O3 O N N 335 NAG O4 O N N 336 NAG O5 O N N 337 NAG O6 O N N 338 NAG O7 O N N 339 NAG H1 H N N 340 NAG H2 H N N 341 NAG H3 H N N 342 NAG H4 H N N 343 NAG H5 H N N 344 NAG H61 H N N 345 NAG H62 H N N 346 NAG H81 H N N 347 NAG H82 H N N 348 NAG H83 H N N 349 NAG HN2 H N N 350 NAG HO1 H N N 351 NAG HO3 H N N 352 NAG HO4 H N N 353 NAG HO6 H N N 354 PHE N N N N 355 PHE CA C N S 356 PHE C C N N 357 PHE O O N N 358 PHE CB C N N 359 PHE CG C Y N 360 PHE CD1 C Y N 361 PHE CD2 C Y N 362 PHE CE1 C Y N 363 PHE CE2 C Y N 364 PHE CZ C Y N 365 PHE OXT O N N 366 PHE H H N N 367 PHE H2 H N N 368 PHE HA H N N 369 PHE HB2 H N N 370 PHE HB3 H N N 371 PHE HD1 H N N 372 PHE HD2 H N N 373 PHE HE1 H N N 374 PHE HE2 H N N 375 PHE HZ H N N 376 PHE HXT H N N 377 PRO N N N N 378 PRO CA C N S 379 PRO C C N N 380 PRO O O N N 381 PRO CB C N N 382 PRO CG C N N 383 PRO CD C N N 384 PRO OXT O N N 385 PRO H H N N 386 PRO HA H N N 387 PRO HB2 H N N 388 PRO HB3 H N N 389 PRO HG2 H N N 390 PRO HG3 H N N 391 PRO HD2 H N N 392 PRO HD3 H N N 393 PRO HXT H N N 394 SER N N N N 395 SER CA C N S 396 SER C C N N 397 SER O O N N 398 SER CB C N N 399 SER OG O N N 400 SER OXT O N N 401 SER H H N N 402 SER H2 H N N 403 SER HA H N N 404 SER HB2 H N N 405 SER HB3 H N N 406 SER HG H N N 407 SER HXT H N N 408 THR N N N N 409 THR CA C N S 410 THR C C N N 411 THR O O N N 412 THR CB C N R 413 THR OG1 O N N 414 THR CG2 C N N 415 THR OXT O N N 416 THR H H N N 417 THR H2 H N N 418 THR HA H N N 419 THR HB H N N 420 THR HG1 H N N 421 THR HG21 H N N 422 THR HG22 H N N 423 THR HG23 H N N 424 THR HXT H N N 425 TRP N N N N 426 TRP CA C N S 427 TRP C C N N 428 TRP O O N N 429 TRP CB C N N 430 TRP CG C Y N 431 TRP CD1 C Y N 432 TRP CD2 C Y N 433 TRP NE1 N Y N 434 TRP CE2 C Y N 435 TRP CE3 C Y N 436 TRP CZ2 C Y N 437 TRP CZ3 C Y N 438 TRP CH2 C Y N 439 TRP OXT O N N 440 TRP H H N N 441 TRP H2 H N N 442 TRP HA H N N 443 TRP HB2 H N N 444 TRP HB3 H N N 445 TRP HD1 H N N 446 TRP HE1 H N N 447 TRP HE3 H N N 448 TRP HZ2 H N N 449 TRP HZ3 H N N 450 TRP HH2 H N N 451 TRP HXT H N N 452 TYR N N N N 453 TYR CA C N S 454 TYR C C N N 455 TYR O O N N 456 TYR CB C N N 457 TYR CG C Y N 458 TYR CD1 C Y N 459 TYR CD2 C Y N 460 TYR CE1 C Y N 461 TYR CE2 C Y N 462 TYR CZ C Y N 463 TYR OH O N N 464 TYR OXT O N N 465 TYR H H N N 466 TYR H2 H N N 467 TYR HA H N N 468 TYR HB2 H N N 469 TYR HB3 H N N 470 TYR HD1 H N N 471 TYR HD2 H N N 472 TYR HE1 H N N 473 TYR HE2 H N N 474 TYR HH H N N 475 TYR HXT H N N 476 VAL N N N N 477 VAL CA C N S 478 VAL C C N N 479 VAL O O N N 480 VAL CB C N N 481 VAL CG1 C N N 482 VAL CG2 C N N 483 VAL OXT O N N 484 VAL H H N N 485 VAL H2 H N N 486 VAL HA H N N 487 VAL HB H N N 488 VAL HG11 H N N 489 VAL HG12 H N N 490 VAL HG13 H N N 491 VAL HG21 H N N 492 VAL HG22 H N N 493 VAL HG23 H N N 494 VAL HXT H N N 495 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BMA C1 C2 sing N N 70 BMA C1 O1 sing N N 71 BMA C1 O5 sing N N 72 BMA C1 H1 sing N N 73 BMA C2 C3 sing N N 74 BMA C2 O2 sing N N 75 BMA C2 H2 sing N N 76 BMA C3 C4 sing N N 77 BMA C3 O3 sing N N 78 BMA C3 H3 sing N N 79 BMA C4 C5 sing N N 80 BMA C4 O4 sing N N 81 BMA C4 H4 sing N N 82 BMA C5 C6 sing N N 83 BMA C5 O5 sing N N 84 BMA C5 H5 sing N N 85 BMA C6 O6 sing N N 86 BMA C6 H61 sing N N 87 BMA C6 H62 sing N N 88 BMA O1 HO1 sing N N 89 BMA O2 HO2 sing N N 90 BMA O3 HO3 sing N N 91 BMA O4 HO4 sing N N 92 BMA O6 HO6 sing N N 93 CYS N CA sing N N 94 CYS N H sing N N 95 CYS N H2 sing N N 96 CYS CA C sing N N 97 CYS CA CB sing N N 98 CYS CA HA sing N N 99 CYS C O doub N N 100 CYS C OXT sing N N 101 CYS CB SG sing N N 102 CYS CB HB2 sing N N 103 CYS CB HB3 sing N N 104 CYS SG HG sing N N 105 CYS OXT HXT sing N N 106 GLN N CA sing N N 107 GLN N H sing N N 108 GLN N H2 sing N N 109 GLN CA C sing N N 110 GLN CA CB sing N N 111 GLN CA HA sing N N 112 GLN C O doub N N 113 GLN C OXT sing N N 114 GLN CB CG sing N N 115 GLN CB HB2 sing N N 116 GLN CB HB3 sing N N 117 GLN CG CD sing N N 118 GLN CG HG2 sing N N 119 GLN CG HG3 sing N N 120 GLN CD OE1 doub N N 121 GLN CD NE2 sing N N 122 GLN NE2 HE21 sing N N 123 GLN NE2 HE22 sing N N 124 GLN OXT HXT sing N N 125 GLU N CA sing N N 126 GLU N H sing N N 127 GLU N H2 sing N N 128 GLU CA C sing N N 129 GLU CA CB sing N N 130 GLU CA HA sing N N 131 GLU C O doub N N 132 GLU C OXT sing N N 133 GLU CB CG sing N N 134 GLU CB HB2 sing N N 135 GLU CB HB3 sing N N 136 GLU CG CD sing N N 137 GLU CG HG2 sing N N 138 GLU CG HG3 sing N N 139 GLU CD OE1 doub N N 140 GLU CD OE2 sing N N 141 GLU OE2 HE2 sing N N 142 GLU OXT HXT sing N N 143 GLY N CA sing N N 144 GLY N H sing N N 145 GLY N H2 sing N N 146 GLY CA C sing N N 147 GLY CA HA2 sing N N 148 GLY CA HA3 sing N N 149 GLY C O doub N N 150 GLY C OXT sing N N 151 GLY OXT HXT sing N N 152 HIS N CA sing N N 153 HIS N H sing N N 154 HIS N H2 sing N N 155 HIS CA C sing N N 156 HIS CA CB sing N N 157 HIS CA HA sing N N 158 HIS C O doub N N 159 HIS C OXT sing N N 160 HIS CB CG sing N N 161 HIS CB HB2 sing N N 162 HIS CB HB3 sing N N 163 HIS CG ND1 sing Y N 164 HIS CG CD2 doub Y N 165 HIS ND1 CE1 doub Y N 166 HIS ND1 HD1 sing N N 167 HIS CD2 NE2 sing Y N 168 HIS CD2 HD2 sing N N 169 HIS CE1 NE2 sing Y N 170 HIS CE1 HE1 sing N N 171 HIS NE2 HE2 sing N N 172 HIS OXT HXT sing N N 173 ILE N CA sing N N 174 ILE N H sing N N 175 ILE N H2 sing N N 176 ILE CA C sing N N 177 ILE CA CB sing N N 178 ILE CA HA sing N N 179 ILE C O doub N N 180 ILE C OXT sing N N 181 ILE CB CG1 sing N N 182 ILE CB CG2 sing N N 183 ILE CB HB sing N N 184 ILE CG1 CD1 sing N N 185 ILE CG1 HG12 sing N N 186 ILE CG1 HG13 sing N N 187 ILE CG2 HG21 sing N N 188 ILE CG2 HG22 sing N N 189 ILE CG2 HG23 sing N N 190 ILE CD1 HD11 sing N N 191 ILE CD1 HD12 sing N N 192 ILE CD1 HD13 sing N N 193 ILE OXT HXT sing N N 194 LEU N CA sing N N 195 LEU N H sing N N 196 LEU N H2 sing N N 197 LEU CA C sing N N 198 LEU CA CB sing N N 199 LEU CA HA sing N N 200 LEU C O doub N N 201 LEU C OXT sing N N 202 LEU CB CG sing N N 203 LEU CB HB2 sing N N 204 LEU CB HB3 sing N N 205 LEU CG CD1 sing N N 206 LEU CG CD2 sing N N 207 LEU CG HG sing N N 208 LEU CD1 HD11 sing N N 209 LEU CD1 HD12 sing N N 210 LEU CD1 HD13 sing N N 211 LEU CD2 HD21 sing N N 212 LEU CD2 HD22 sing N N 213 LEU CD2 HD23 sing N N 214 LEU OXT HXT sing N N 215 LYS N CA sing N N 216 LYS N H sing N N 217 LYS N H2 sing N N 218 LYS CA C sing N N 219 LYS CA CB sing N N 220 LYS CA HA sing N N 221 LYS C O doub N N 222 LYS C OXT sing N N 223 LYS CB CG sing N N 224 LYS CB HB2 sing N N 225 LYS CB HB3 sing N N 226 LYS CG CD sing N N 227 LYS CG HG2 sing N N 228 LYS CG HG3 sing N N 229 LYS CD CE sing N N 230 LYS CD HD2 sing N N 231 LYS CD HD3 sing N N 232 LYS CE NZ sing N N 233 LYS CE HE2 sing N N 234 LYS CE HE3 sing N N 235 LYS NZ HZ1 sing N N 236 LYS NZ HZ2 sing N N 237 LYS NZ HZ3 sing N N 238 LYS OXT HXT sing N N 239 M6D C2 C1 sing N N 240 M6D O1 C1 sing N N 241 M6D C1 O5 sing N N 242 M6D C1 H1 sing N N 243 M6D O2 C2 sing N N 244 M6D C2 C3 sing N N 245 M6D C2 H2 sing N N 246 M6D O3 C3 sing N N 247 M6D C3 C4 sing N N 248 M6D C3 H3 sing N N 249 M6D C4 O4 sing N N 250 M6D C4 C5 sing N N 251 M6D C4 H4 sing N N 252 M6D O5 C5 sing N N 253 M6D C5 C6 sing N N 254 M6D C5 H5 sing N N 255 M6D C6 O6 sing N N 256 M6D C6 H61 sing N N 257 M6D C6 H62 sing N N 258 M6D O1 HO1 sing N N 259 M6D O2 HO2 sing N N 260 M6D O3 HO3 sing N N 261 M6D O4 HO4 sing N N 262 M6D O6 P sing N N 263 M6D O3P P doub N N 264 M6D P O1P sing N N 265 M6D P O2P sing N N 266 M6D O1P HO1P sing N N 267 M6D O2P HO2P sing N N 268 MAN C1 C2 sing N N 269 MAN C1 O1 sing N N 270 MAN C1 O5 sing N N 271 MAN C1 H1 sing N N 272 MAN C2 C3 sing N N 273 MAN C2 O2 sing N N 274 MAN C2 H2 sing N N 275 MAN C3 C4 sing N N 276 MAN C3 O3 sing N N 277 MAN C3 H3 sing N N 278 MAN C4 C5 sing N N 279 MAN C4 O4 sing N N 280 MAN C4 H4 sing N N 281 MAN C5 C6 sing N N 282 MAN C5 O5 sing N N 283 MAN C5 H5 sing N N 284 MAN C6 O6 sing N N 285 MAN C6 H61 sing N N 286 MAN C6 H62 sing N N 287 MAN O1 HO1 sing N N 288 MAN O2 HO2 sing N N 289 MAN O3 HO3 sing N N 290 MAN O4 HO4 sing N N 291 MAN O6 HO6 sing N N 292 MET N CA sing N N 293 MET N H sing N N 294 MET N H2 sing N N 295 MET CA C sing N N 296 MET CA CB sing N N 297 MET CA HA sing N N 298 MET C O doub N N 299 MET C OXT sing N N 300 MET CB CG sing N N 301 MET CB HB2 sing N N 302 MET CB HB3 sing N N 303 MET CG SD sing N N 304 MET CG HG2 sing N N 305 MET CG HG3 sing N N 306 MET SD CE sing N N 307 MET CE HE1 sing N N 308 MET CE HE2 sing N N 309 MET CE HE3 sing N N 310 MET OXT HXT sing N N 311 NAG C1 C2 sing N N 312 NAG C1 O1 sing N N 313 NAG C1 O5 sing N N 314 NAG C1 H1 sing N N 315 NAG C2 C3 sing N N 316 NAG C2 N2 sing N N 317 NAG C2 H2 sing N N 318 NAG C3 C4 sing N N 319 NAG C3 O3 sing N N 320 NAG C3 H3 sing N N 321 NAG C4 C5 sing N N 322 NAG C4 O4 sing N N 323 NAG C4 H4 sing N N 324 NAG C5 C6 sing N N 325 NAG C5 O5 sing N N 326 NAG C5 H5 sing N N 327 NAG C6 O6 sing N N 328 NAG C6 H61 sing N N 329 NAG C6 H62 sing N N 330 NAG C7 C8 sing N N 331 NAG C7 N2 sing N N 332 NAG C7 O7 doub N N 333 NAG C8 H81 sing N N 334 NAG C8 H82 sing N N 335 NAG C8 H83 sing N N 336 NAG N2 HN2 sing N N 337 NAG O1 HO1 sing N N 338 NAG O3 HO3 sing N N 339 NAG O4 HO4 sing N N 340 NAG O6 HO6 sing N N 341 PHE N CA sing N N 342 PHE N H sing N N 343 PHE N H2 sing N N 344 PHE CA C sing N N 345 PHE CA CB sing N N 346 PHE CA HA sing N N 347 PHE C O doub N N 348 PHE C OXT sing N N 349 PHE CB CG sing N N 350 PHE CB HB2 sing N N 351 PHE CB HB3 sing N N 352 PHE CG CD1 doub Y N 353 PHE CG CD2 sing Y N 354 PHE CD1 CE1 sing Y N 355 PHE CD1 HD1 sing N N 356 PHE CD2 CE2 doub Y N 357 PHE CD2 HD2 sing N N 358 PHE CE1 CZ doub Y N 359 PHE CE1 HE1 sing N N 360 PHE CE2 CZ sing Y N 361 PHE CE2 HE2 sing N N 362 PHE CZ HZ sing N N 363 PHE OXT HXT sing N N 364 PRO N CA sing N N 365 PRO N CD sing N N 366 PRO N H sing N N 367 PRO CA C sing N N 368 PRO CA CB sing N N 369 PRO CA HA sing N N 370 PRO C O doub N N 371 PRO C OXT sing N N 372 PRO CB CG sing N N 373 PRO CB HB2 sing N N 374 PRO CB HB3 sing N N 375 PRO CG CD sing N N 376 PRO CG HG2 sing N N 377 PRO CG HG3 sing N N 378 PRO CD HD2 sing N N 379 PRO CD HD3 sing N N 380 PRO OXT HXT sing N N 381 SER N CA sing N N 382 SER N H sing N N 383 SER N H2 sing N N 384 SER CA C sing N N 385 SER CA CB sing N N 386 SER CA HA sing N N 387 SER C O doub N N 388 SER C OXT sing N N 389 SER CB OG sing N N 390 SER CB HB2 sing N N 391 SER CB HB3 sing N N 392 SER OG HG sing N N 393 SER OXT HXT sing N N 394 THR N CA sing N N 395 THR N H sing N N 396 THR N H2 sing N N 397 THR CA C sing N N 398 THR CA CB sing N N 399 THR CA HA sing N N 400 THR C O doub N N 401 THR C OXT sing N N 402 THR CB OG1 sing N N 403 THR CB CG2 sing N N 404 THR CB HB sing N N 405 THR OG1 HG1 sing N N 406 THR CG2 HG21 sing N N 407 THR CG2 HG22 sing N N 408 THR CG2 HG23 sing N N 409 THR OXT HXT sing N N 410 TRP N CA sing N N 411 TRP N H sing N N 412 TRP N H2 sing N N 413 TRP CA C sing N N 414 TRP CA CB sing N N 415 TRP CA HA sing N N 416 TRP C O doub N N 417 TRP C OXT sing N N 418 TRP CB CG sing N N 419 TRP CB HB2 sing N N 420 TRP CB HB3 sing N N 421 TRP CG CD1 doub Y N 422 TRP CG CD2 sing Y N 423 TRP CD1 NE1 sing Y N 424 TRP CD1 HD1 sing N N 425 TRP CD2 CE2 doub Y N 426 TRP CD2 CE3 sing Y N 427 TRP NE1 CE2 sing Y N 428 TRP NE1 HE1 sing N N 429 TRP CE2 CZ2 sing Y N 430 TRP CE3 CZ3 doub Y N 431 TRP CE3 HE3 sing N N 432 TRP CZ2 CH2 doub Y N 433 TRP CZ2 HZ2 sing N N 434 TRP CZ3 CH2 sing Y N 435 TRP CZ3 HZ3 sing N N 436 TRP CH2 HH2 sing N N 437 TRP OXT HXT sing N N 438 TYR N CA sing N N 439 TYR N H sing N N 440 TYR N H2 sing N N 441 TYR CA C sing N N 442 TYR CA CB sing N N 443 TYR CA HA sing N N 444 TYR C O doub N N 445 TYR C OXT sing N N 446 TYR CB CG sing N N 447 TYR CB HB2 sing N N 448 TYR CB HB3 sing N N 449 TYR CG CD1 doub Y N 450 TYR CG CD2 sing Y N 451 TYR CD1 CE1 sing Y N 452 TYR CD1 HD1 sing N N 453 TYR CD2 CE2 doub Y N 454 TYR CD2 HD2 sing N N 455 TYR CE1 CZ doub Y N 456 TYR CE1 HE1 sing N N 457 TYR CE2 CZ sing Y N 458 TYR CE2 HE2 sing N N 459 TYR CZ OH sing N N 460 TYR OH HH sing N N 461 TYR OXT HXT sing N N 462 VAL N CA sing N N 463 VAL N H sing N N 464 VAL N H2 sing N N 465 VAL CA C sing N N 466 VAL CA CB sing N N 467 VAL CA HA sing N N 468 VAL C O doub N N 469 VAL C OXT sing N N 470 VAL CB CG1 sing N N 471 VAL CB CG2 sing N N 472 VAL CB HB sing N N 473 VAL CG1 HG11 sing N N 474 VAL CG1 HG12 sing N N 475 VAL CG1 HG13 sing N N 476 VAL CG2 HG21 sing N N 477 VAL CG2 HG22 sing N N 478 VAL CG2 HG23 sing N N 479 VAL OXT HXT sing N N 480 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 A NAG 521 n B 2 NAG 2 B NAG 2 A NAG 522 n B 2 BMA 3 B BMA 3 A BMA 523 n B 2 MAN 4 B MAN 4 A MAN 524 n B 2 MAN 5 B MAN 5 A MAN 525 n C 3 NAG 1 C NAG 1 A NAG 541 n C 3 NAG 2 C NAG 2 A NAG 542 n C 3 BMA 3 C BMA 3 A BMA 543 n C 3 MAN 4 C MAN 4 A MAN 545 n C 3 MAN 5 C MAN 5 A MAN 546 n C 3 MAN 6 C MAN 6 A MAN 544 n D 4 NAG 1 D NAG 1 A NAG 581 n D 4 NAG 2 D NAG 2 A NAG 582 n D 4 BMA 3 D BMA 3 A BMA 583 n E 5 NAG 1 E NAG 1 A NAG 601 n E 5 NAG 2 E NAG 2 A NAG 602 n F 6 NAG 1 F NAG 1 A NAG 621 n F 6 NAG 2 F NAG 2 A NAG 622 n F 6 BMA 3 F BMA 3 A BMA 623 n F 6 MAN 4 F MAN 4 A MAN 624 n F 6 MAN 5 F MAN 5 A MAN 627 n F 6 M6D 6 F M6D 6 A M6P 628 n F 6 MAN 7 F MAN 7 A MAN 629 n G 2 NAG 1 G NAG 1 A NAG 641 n G 2 NAG 2 G NAG 2 A NAG 642 n G 2 BMA 3 G BMA 3 A BMA 643 n G 2 MAN 4 G MAN 4 A MAN 644 n G 2 MAN 5 G MAN 5 A MAN 645 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man M6D 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp6PO3 MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'DManpa1-3[DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-' 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/3,5,4/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-3/a4-b1_b4-c1_c3-d1_c6-e1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{}}}}}' LINUCS PDB-CARE ? 4 3 'DManpa1-3DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-' 'Glycam Condensed Sequence' GMML 1.0 5 3 'WURCS=2.0/3,6,5/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-3-3/a4-b1_b4-c1_c3-d1_c6-e1_e3-f1' WURCS PDB2Glycan 1.1.0 6 3 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{[(3+1)][a-D-Manp]{}}}}}}' LINUCS PDB-CARE ? 7 4 DManpb1-4DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 8 4 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2/a4-b1_b4-c1' WURCS PDB2Glycan 1.1.0 9 4 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}}' LINUCS PDB-CARE ? 10 5 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 11 5 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 12 5 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? 13 6 ;WURCS=2.0/4,7,6/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1122h-1b_1-5_6*OPO/3O/3=O]/1-1-2-3-3-3-4/a4-b1_b4-c1_c3-d1_c6-e1_e6-f1_f2-g1 ; WURCS PDB2Glycan 1.1.0 14 6 ;[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{[(6+1)][a-D-Manp]{[(2+1)][b-D-Manp]{[(6+0)][P]{}}}}}}}} ; LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 BMA C1 O1 2 NAG O4 HO4 sing ? 3 2 4 MAN C1 O1 3 BMA O3 HO3 sing ? 4 2 5 MAN C1 O1 3 BMA O6 HO6 sing ? 5 3 2 NAG C1 O1 1 NAG O4 HO4 sing ? 6 3 3 BMA C1 O1 2 NAG O4 HO4 sing ? 7 3 4 MAN C1 O1 3 BMA O6 HO6 sing ? 8 3 5 MAN C1 O1 4 MAN O3 HO3 sing ? 9 3 6 MAN C1 O1 3 BMA O3 HO3 sing ? 10 4 2 NAG C1 O1 1 NAG O4 HO4 sing ? 11 4 3 BMA C1 O1 2 NAG O4 HO4 sing ? 12 5 2 NAG C1 O1 1 NAG O4 HO4 sing ? 13 6 2 NAG C1 O1 1 NAG O4 HO4 sing ? 14 6 3 BMA C1 O1 2 NAG O4 HO4 sing ? 15 6 4 MAN C1 O1 3 BMA O6 HO6 sing ? 16 6 5 MAN C1 O1 4 MAN O6 HO6 sing ? 17 6 6 M6D C1 O1 5 MAN O2 HO2 sing ? 18 6 7 MAN C1 O1 3 BMA O3 HO3 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 BMA 3 n 2 MAN 4 n 2 MAN 5 n 3 NAG 1 n 3 NAG 2 n 3 BMA 3 n 3 MAN 4 n 3 MAN 5 n 3 MAN 6 n 4 NAG 1 n 4 NAG 2 n 4 BMA 3 n 5 NAG 1 n 5 NAG 2 n 6 NAG 1 n 6 NAG 2 n 6 BMA 3 n 6 MAN 4 n 6 MAN 5 n 6 M6D 6 n 6 MAN 7 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 7 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 8 'CHLORIDE ION' CL # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4Q4B _pdbx_initial_refinement_model.details 'pdb entry 4Q4B' #