HEADER HYDROLASE 14-APR-14 4Q4L TITLE CRYSTAL STRUCTURE OF AN ATP SYNTHASE SUBUNIT BETA 1 (F1-B1) FROM TITLE 2 BURKHOLDERIA THAILANDENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP SYNTHASE SUBUNIT BETA 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATP SYNTHASE F1 SECTOR SUBUNIT BETA 1, F-ATPASE SUBUNIT BETA COMPND 5 1; COMPND 6 EC: 3.6.3.14; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA THAILANDENSIS; SOURCE 3 ORGANISM_TAXID: 271848; SOURCE 4 STRAIN: E264; SOURCE 5 GENE: APTD1, ATPD1, BTH_I3308; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PAVA0421 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, SSGCID, ATP-BINDING, METAL ION BINDING, KEYWDS 4 HETEROOLIGOMERIC PROTEIN COMPLEX, MULTIDOMAIN PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE,SEATTLE AUTHOR 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 20-SEP-23 4Q4L 1 REMARK SEQADV LINK REVDAT 1 30-APR-14 4Q4L 0 JRNL AUTH T.E.EDWARDS,J.ABENDROTH, JRNL AUTH 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL TITL CRYSTAL STRUCTURE OF AN ATP SYNTHASE SUBUNIT BETA 1 (F1-B1) JRNL TITL 2 FROM BURKHOLDERIA THAILANDENSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 29696 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1462 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2040 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3201 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.96000 REMARK 3 B22 (A**2) : -0.52000 REMARK 3 B33 (A**2) : -2.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.205 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.181 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.525 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3268 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3114 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4440 ; 1.465 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7145 ; 0.804 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 436 ; 5.802 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 126 ;35.803 ;24.206 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 522 ;14.013 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.391 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 523 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3738 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 686 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1744 ; 2.418 ; 3.981 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1743 ; 2.417 ; 3.980 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2174 ; 3.668 ; 5.949 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 92 REMARK 3 ORIGIN FOR THE GROUP (A): 40.8893 49.7535 -3.5219 REMARK 3 T TENSOR REMARK 3 T11: 0.2663 T22: 0.3503 REMARK 3 T33: 0.1369 T12: 0.0631 REMARK 3 T13: 0.0430 T23: -0.1154 REMARK 3 L TENSOR REMARK 3 L11: 2.4404 L22: 3.7971 REMARK 3 L33: 3.6856 L12: -0.5719 REMARK 3 L13: -1.4231 L23: 0.1803 REMARK 3 S TENSOR REMARK 3 S11: -0.1031 S12: 0.7253 S13: -0.3274 REMARK 3 S21: -0.0165 S22: -0.1022 S23: -0.2728 REMARK 3 S31: 0.3368 S32: 0.1670 S33: 0.2053 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 93 A 298 REMARK 3 ORIGIN FOR THE GROUP (A): 34.2255 68.0949 15.8906 REMARK 3 T TENSOR REMARK 3 T11: 0.1682 T22: 0.0255 REMARK 3 T33: 0.0991 T12: 0.0231 REMARK 3 T13: 0.0445 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.9751 L22: 2.7499 REMARK 3 L33: 1.1349 L12: -1.0608 REMARK 3 L13: -0.4053 L23: 1.0206 REMARK 3 S TENSOR REMARK 3 S11: 0.0346 S12: 0.0135 S13: 0.0135 REMARK 3 S21: -0.0685 S22: 0.0581 S23: -0.3932 REMARK 3 S31: 0.0821 S32: 0.1492 S33: -0.0927 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 299 A 476 REMARK 3 ORIGIN FOR THE GROUP (A): 28.0339 92.4164 26.9923 REMARK 3 T TENSOR REMARK 3 T11: 0.1412 T22: 0.0118 REMARK 3 T33: 0.0938 T12: -0.0186 REMARK 3 T13: -0.0014 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 0.5322 L22: 3.0630 REMARK 3 L33: 1.4244 L12: -0.6901 REMARK 3 L13: -0.3327 L23: 0.9802 REMARK 3 S TENSOR REMARK 3 S11: -0.0160 S12: -0.0509 S13: 0.2010 REMARK 3 S21: 0.0988 S22: 0.1338 S23: -0.4226 REMARK 3 S31: -0.1630 S32: 0.1100 S33: -0.1178 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4Q4L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085596. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29756 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.6900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.54100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.490 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 3OAA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BUTHA.17369.C.A1.PW35952 AT 19.9 MG/ML REMARK 280 WITH 1 MM MNCL2 AND 1 MM ATPGS AGAINST PACT SCREEN CONDITION B5, REMARK 280 0.1 M MIB BUFFER PH 8.0, 25% PEG 1500 WITH 20% ETHYLENE GLYCOL REMARK 280 AS CRYO-PROTECTANT, CRYSTAL TRACKING ID 242856B5, UNIQUE REMARK 280 TRACKING ID PPM0-6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.71000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.77000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.99500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.77000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.71000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.99500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 THR A 3 REMARK 465 LEU A 4 REMARK 465 GLU A 5 REMARK 465 ALA A 6 REMARK 465 GLN A 7 REMARK 465 THR A 8 REMARK 465 GLN A 9 REMARK 465 GLY A 10 REMARK 465 PRO A 11 REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 MET A 14 REMARK 465 SER A 15 REMARK 465 THR A 16 REMARK 465 ALA A 17 REMARK 465 SER A 76 REMARK 465 ASP A 77 REMARK 465 GLY A 78 REMARK 465 GLY A 197 REMARK 465 GLU A 198 REMARK 465 ARG A 199 REMARK 465 THR A 200 REMARK 465 ARG A 201 REMARK 465 GLU A 202 REMARK 465 GLY A 203 REMARK 465 ASP A 318 REMARK 465 ASP A 319 REMARK 465 LEU A 320 REMARK 465 THR A 321 REMARK 465 ASP A 322 REMARK 465 PRO A 323 REMARK 465 SER A 324 REMARK 465 PRO A 325 REMARK 465 ALA A 326 REMARK 465 THR A 327 REMARK 465 THR A 328 REMARK 465 PHE A 329 REMARK 465 GLY A 330 REMARK 465 GLN A 477 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 ARG A 38 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 39 CG CD OE1 OE2 REMARK 470 GLU A 51 CG CD OE1 OE2 REMARK 470 SER A 53 OG REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 ASP A 65 CG OD1 OD2 REMARK 470 LEU A 79 CG CD1 CD2 REMARK 470 ARG A 80 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 86 CG CD CE NZ REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 LYS A 185 CG CD CE NZ REMARK 470 ASN A 204 CG OD1 ND2 REMARK 470 HIS A 208 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 211 CG CD CE NZ REMARK 470 ASN A 227 CG OD1 ND2 REMARK 470 LEU A 266 CG CD1 CD2 REMARK 470 LEU A 274 CG CD1 CD2 REMARK 470 LEU A 275 CG CD1 CD2 REMARK 470 VAL A 282 CG1 CG2 REMARK 470 GLN A 285 CG CD OE1 NE2 REMARK 470 GLU A 290 CG CD OE1 OE2 REMARK 470 GLU A 291 CG CD OE1 OE2 REMARK 470 LYS A 294 CG CD CE NZ REMARK 470 VAL A 315 CG1 CG2 REMARK 470 HIS A 331 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 340 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 388 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 393 CG1 CG2 CD1 REMARK 470 LEU A 394 CG CD1 CD2 REMARK 470 ASP A 397 CG OD1 OD2 REMARK 470 GLU A 398 CG CD OE1 OE2 REMARK 470 GLU A 402 CG CD OE1 OE2 REMARK 470 LYS A 404 CG CD CE NZ REMARK 470 VAL A 426 CG1 CG2 REMARK 470 PHE A 427 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 438 CG CD CE NZ REMARK 470 GLN A 458 CG CD OE1 NE2 REMARK 470 ILE A 476 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 45 -1.70 70.74 REMARK 500 GLU A 51 109.85 -58.76 REMARK 500 ASN A 260 48.73 36.31 REMARK 500 THR A 269 -125.42 -110.16 REMARK 500 ILE A 361 87.18 -69.09 REMARK 500 ASP A 362 119.50 -166.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 453 O REMARK 620 2 HOH A 607 O 176.5 REMARK 620 3 HOH A 628 O 88.2 91.2 REMARK 620 4 HOH A 640 O 84.7 98.6 79.2 REMARK 620 5 HOH A 661 O 95.3 84.9 172.1 108.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-BUTHA.17369.C RELATED DB: TARGETTRACK DBREF 4Q4L A 14 477 UNP Q2STE9 ATPB1_BURTA 1 464 SEQADV 4Q4L MET A -7 UNP Q2STE9 EXPRESSION TAG SEQADV 4Q4L ALA A -6 UNP Q2STE9 EXPRESSION TAG SEQADV 4Q4L HIS A -5 UNP Q2STE9 EXPRESSION TAG SEQADV 4Q4L HIS A -4 UNP Q2STE9 EXPRESSION TAG SEQADV 4Q4L HIS A -3 UNP Q2STE9 EXPRESSION TAG SEQADV 4Q4L HIS A -2 UNP Q2STE9 EXPRESSION TAG SEQADV 4Q4L HIS A -1 UNP Q2STE9 EXPRESSION TAG SEQADV 4Q4L HIS A 0 UNP Q2STE9 EXPRESSION TAG SEQADV 4Q4L MET A 1 UNP Q2STE9 EXPRESSION TAG SEQADV 4Q4L GLY A 2 UNP Q2STE9 EXPRESSION TAG SEQADV 4Q4L THR A 3 UNP Q2STE9 EXPRESSION TAG SEQADV 4Q4L LEU A 4 UNP Q2STE9 EXPRESSION TAG SEQADV 4Q4L GLU A 5 UNP Q2STE9 EXPRESSION TAG SEQADV 4Q4L ALA A 6 UNP Q2STE9 EXPRESSION TAG SEQADV 4Q4L GLN A 7 UNP Q2STE9 EXPRESSION TAG SEQADV 4Q4L THR A 8 UNP Q2STE9 EXPRESSION TAG SEQADV 4Q4L GLN A 9 UNP Q2STE9 EXPRESSION TAG SEQADV 4Q4L GLY A 10 UNP Q2STE9 EXPRESSION TAG SEQADV 4Q4L PRO A 11 UNP Q2STE9 EXPRESSION TAG SEQADV 4Q4L GLY A 12 UNP Q2STE9 EXPRESSION TAG SEQADV 4Q4L SER A 13 UNP Q2STE9 EXPRESSION TAG SEQRES 1 A 485 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 485 ALA GLN THR GLN GLY PRO GLY SER MET SER THR ALA ALA SEQRES 3 A 485 LEU VAL GLU GLY LYS ILE VAL GLN CYS ILE GLY ALA VAL SEQRES 4 A 485 ILE ASP VAL GLU PHE PRO ARG GLU SER MET PRO LYS ILE SEQRES 5 A 485 TYR ASP ALA LEU ILE LEU GLU GLY SER GLU LEU THR LEU SEQRES 6 A 485 GLU VAL GLN GLN GLN LEU GLY ASP GLY VAL VAL ARG THR SEQRES 7 A 485 ILE CYS LEU GLY ALA SER ASP GLY LEU ARG ARG GLY VAL SEQRES 8 A 485 VAL VAL LYS ASN THR GLY ASN PRO ILE SER VAL PRO VAL SEQRES 9 A 485 GLY LYS PRO THR LEU GLY ARG ILE MET ASP VAL LEU GLY SEQRES 10 A 485 ARG PRO ILE ASP GLU ALA GLY PRO ILE GLU SER GLU ASN SEQRES 11 A 485 LYS ARG SER ILE HIS GLN LYS ALA PRO ALA PHE ASP GLU SEQRES 12 A 485 LEU SER PRO SER THR GLU LEU LEU GLU THR GLY ILE LYS SEQRES 13 A 485 VAL ILE ASP LEU ILE CYS PRO PHE ALA LYS GLY GLY LYS SEQRES 14 A 485 VAL GLY LEU PHE GLY GLY ALA GLY VAL GLY LYS THR VAL SEQRES 15 A 485 ASN MET MET GLU LEU ILE ASN ASN ILE ALA LYS GLU HIS SEQRES 16 A 485 GLY GLY TYR SER VAL PHE ALA GLY VAL GLY GLU ARG THR SEQRES 17 A 485 ARG GLU GLY ASN ASP PHE TYR HIS GLU MET LYS ASP SER SEQRES 18 A 485 ASN VAL LEU ASP LYS VAL ALA LEU VAL TYR GLY GLN MET SEQRES 19 A 485 ASN GLU PRO PRO GLY ASN ARG LEU ARG VAL ALA LEU THR SEQRES 20 A 485 GLY LEU THR MET ALA GLU HIS PHE ARG ASP GLU GLY LEU SEQRES 21 A 485 ASP VAL LEU PHE PHE VAL ASP ASN ILE TYR ARG PHE THR SEQRES 22 A 485 LEU ALA GLY THR GLU VAL SER ALA LEU LEU GLY ARG MET SEQRES 23 A 485 PRO SER ALA VAL GLY TYR GLN PRO THR LEU ALA GLU GLU SEQRES 24 A 485 MET GLY LYS LEU GLN GLU ARG ILE THR SER THR LYS LYS SEQRES 25 A 485 GLY SER ILE THR SER VAL GLN ALA VAL TYR VAL PRO ALA SEQRES 26 A 485 ASP ASP LEU THR ASP PRO SER PRO ALA THR THR PHE GLY SEQRES 27 A 485 HIS LEU ASP ALA THR VAL VAL LEU SER ARG ASP ILE ALA SEQRES 28 A 485 SER LEU GLY ILE TYR PRO ALA VAL ASP PRO LEU ASP SER SEQRES 29 A 485 THR SER ARG GLN ILE ASP PRO ASN VAL ILE GLY GLU GLU SEQRES 30 A 485 HIS TYR SER ILE THR ARG ARG VAL GLN GLN THR LEU GLN SEQRES 31 A 485 ARG TYR LYS GLU LEU ARG ASP ILE ILE ALA ILE LEU GLY SEQRES 32 A 485 MET ASP GLU LEU SER PRO GLU ASP LYS LEU SER VAL ALA SEQRES 33 A 485 ARG ALA ARG LYS ILE GLN ARG PHE LEU SER GLN PRO PHE SEQRES 34 A 485 HIS VAL ALA GLU VAL PHE THR GLY SER PRO GLY LYS TYR SEQRES 35 A 485 VAL PRO LEU LYS GLU THR ILE ARG GLY PHE LYS MET ILE SEQRES 36 A 485 VAL ASP GLY GLU CYS ASP HIS LEU PRO GLU GLN ALA PHE SEQRES 37 A 485 TYR MET VAL GLY THR ILE ASP GLU ALA PHE GLU LYS ALA SEQRES 38 A 485 LYS LYS ILE GLN HET NA A 501 1 HETNAM NA SODIUM ION FORMUL 2 NA NA 1+ FORMUL 3 HOH *110(H2 O) HELIX 1 1 GLY A 97 LEU A 101 5 5 HELIX 2 2 ALA A 132 LEU A 136 5 5 HELIX 3 3 ILE A 147 CYS A 154 1 8 HELIX 4 4 GLY A 171 GLY A 188 1 18 HELIX 5 5 ASP A 205 SER A 213 1 9 HELIX 6 6 VAL A 215 ASP A 217 5 3 HELIX 7 7 PRO A 229 GLU A 250 1 22 HELIX 8 8 GLU A 270 GLY A 276 1 7 HELIX 9 9 THR A 287 GLU A 297 1 11 HELIX 10 10 SER A 339 LEU A 345 1 7 HELIX 11 11 ASP A 362 GLY A 367 1 6 HELIX 12 12 GLY A 367 LEU A 387 1 21 HELIX 13 13 LEU A 387 GLY A 395 1 9 HELIX 14 14 MET A 396 LEU A 399 5 4 HELIX 15 15 SER A 400 LEU A 417 1 18 HELIX 16 16 PHE A 421 VAL A 423 5 3 HELIX 17 17 ALA A 424 GLY A 429 1 6 HELIX 18 18 PRO A 436 GLY A 450 1 15 HELIX 19 19 PRO A 456 TYR A 461 5 6 HELIX 20 20 THR A 465 LYS A 474 1 10 SHEET 1 A 7 GLU A 21 CYS A 27 0 SHEET 2 A 7 VAL A 31 GLU A 35 -1 O GLU A 35 N LYS A 23 SHEET 3 A 7 VAL A 67 LEU A 73 -1 O VAL A 68 N VAL A 34 SHEET 4 A 7 THR A 56 GLY A 64 -1 N THR A 56 O LEU A 73 SHEET 5 A 7 ALA A 47 ILE A 49 -1 N LEU A 48 O LEU A 57 SHEET 6 A 7 VAL A 84 ASN A 87 -1 O LYS A 86 N ILE A 49 SHEET 7 A 7 GLU A 21 CYS A 27 -1 N GLY A 22 O VAL A 85 SHEET 1 B 2 SER A 93 PRO A 95 0 SHEET 2 B 2 LYS A 123 SER A 125 -1 O ARG A 124 N VAL A 94 SHEET 1 C 8 ILE A 104 MET A 105 0 SHEET 2 C 8 VAL A 219 TYR A 223 1 O LEU A 221 N MET A 105 SHEET 3 C 8 TYR A 190 GLY A 195 1 N GLY A 195 O VAL A 222 SHEET 4 C 8 ASP A 253 ASP A 259 1 O PHE A 257 N ALA A 194 SHEET 5 C 8 SER A 306 TYR A 314 1 O THR A 308 N VAL A 254 SHEET 6 C 8 LYS A 161 GLY A 166 1 N VAL A 162 O SER A 309 SHEET 7 C 8 ALA A 334 VAL A 337 1 O VAL A 336 N GLY A 163 SHEET 8 C 8 THR A 357 SER A 358 -1 O THR A 357 N THR A 335 SHEET 1 D 2 LEU A 142 LEU A 143 0 SHEET 2 D 2 PHE A 156 ALA A 157 -1 O PHE A 156 N LEU A 143 LINK O ASP A 453 NA NA A 501 1555 1555 2.41 LINK NA NA A 501 O HOH A 607 1555 1555 2.32 LINK NA NA A 501 O HOH A 628 1555 1555 2.70 LINK NA NA A 501 O HOH A 640 1555 1555 2.44 LINK NA NA A 501 O HOH A 661 1555 1555 2.45 CISPEP 1 TYR A 348 PRO A 349 0 0.19 SITE 1 AC1 6 GLU A 250 ASP A 453 HOH A 607 HOH A 628 SITE 2 AC1 6 HOH A 640 HOH A 661 CRYST1 45.420 97.990 127.540 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022017 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010205 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007841 0.00000