HEADER HYDROLASE 15-APR-14 4Q4T TITLE STRUCTURE OF THE RESUSCITATION PROMOTING FACTOR INTERACTING PROTEIN TITLE 2 RIPA MUTATED AT E444 CAVEAT 4Q4T CHIRALITY ERROR AT CA OF CYS 383 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDOGLYCAN ENDOPEPTIDASE RIPA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RIPA; COMPND 5 SYNONYM: MACROPHAGE INVASION AND INTRACELLULAR PERSISTENCE PROTEIN A, COMPND 6 RESUSCITATION-PROMOTING FACTOR INTERACTION PARTNER A, RPF-INTERACTING COMPND 7 PROTEIN A; COMPND 8 EC: 3.4.-.-; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: ATCC 25618 / H37RV; SOURCE 5 GENE: RIPA, RV1477; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA BETA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.SQUEGLIA,A.RUGGIERO,M.ROMANO,L.VITAGLIANO,R.BERISIO REVDAT 3 28-FEB-24 4Q4T 1 REMARK SEQADV REVDAT 2 24-SEP-14 4Q4T 1 JRNL REVDAT 1 10-SEP-14 4Q4T 0 JRNL AUTH F.SQUEGLIA,A.RUGGIERO,M.ROMANO,L.VITAGLIANO,R.BERISIO JRNL TITL MUTATIONAL AND STRUCTURAL STUDY OF RIPA, A KEY ENZYME IN JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS CELL DIVISION: EVIDENCE FOR THE JRNL TITL 3 L-TO-D INVERSION OF CONFIGURATION OF THE CATALYTIC CYSTEINE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 2295 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 25195744 JRNL DOI 10.1107/S1399004714013674 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 19279 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1047 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.63 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1110 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1539 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 259 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : 0.27000 REMARK 3 B33 (A**2) : -0.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.090 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.097 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.538 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1620 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2201 ; 2.040 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 213 ; 6.332 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 62 ;32.904 ;22.742 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 246 ;12.274 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;10.249 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 238 ; 0.287 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1249 ; 0.012 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1045 ; 1.289 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1676 ; 2.044 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 575 ; 3.151 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 524 ; 5.003 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4Q4T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085604. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20862 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8 MG ML-1 PROTEIN CONCENTRATION AND REMARK 280 2.0 M SODIUM FORMATE IN 0.1 M SODIUM ACETATE TRIHYDRATE BUFFER, REMARK 280 PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.35550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.09750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.63500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.09750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.35550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.63500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 ARG A 3 REMARK 465 ASN A 4 REMARK 465 ARG A 5 REMARK 465 ARG A 6 REMARK 465 GLY A 7 REMARK 465 SER A 8 REMARK 465 PRO A 9 REMARK 465 ALA A 10 REMARK 465 ARG A 11 REMARK 465 PRO A 12 REMARK 465 ALA A 13 REMARK 465 ALA A 14 REMARK 465 ARG A 15 REMARK 465 PHE A 16 REMARK 465 VAL A 17 REMARK 465 ARG A 18 REMARK 465 PRO A 19 REMARK 465 ALA A 20 REMARK 465 ILE A 21 REMARK 465 PRO A 22 REMARK 465 SER A 23 REMARK 465 ALA A 24 REMARK 465 LEU A 25 REMARK 465 SER A 26 REMARK 465 VAL A 27 REMARK 465 ALA A 28 REMARK 465 LEU A 29 REMARK 465 LEU A 30 REMARK 465 VAL A 31 REMARK 465 CYS A 32 REMARK 465 THR A 33 REMARK 465 PRO A 34 REMARK 465 GLY A 35 REMARK 465 LEU A 36 REMARK 465 ALA A 37 REMARK 465 THR A 38 REMARK 465 ALA A 39 REMARK 465 ASP A 40 REMARK 465 PRO A 41 REMARK 465 GLN A 42 REMARK 465 THR A 43 REMARK 465 ASP A 44 REMARK 465 THR A 45 REMARK 465 ILE A 46 REMARK 465 ALA A 47 REMARK 465 ALA A 48 REMARK 465 LEU A 49 REMARK 465 ILE A 50 REMARK 465 ALA A 51 REMARK 465 ASP A 52 REMARK 465 VAL A 53 REMARK 465 ALA A 54 REMARK 465 LYS A 55 REMARK 465 ALA A 56 REMARK 465 ASN A 57 REMARK 465 GLN A 58 REMARK 465 ARG A 59 REMARK 465 LEU A 60 REMARK 465 GLN A 61 REMARK 465 ASP A 62 REMARK 465 LEU A 63 REMARK 465 SER A 64 REMARK 465 ASP A 65 REMARK 465 GLU A 66 REMARK 465 VAL A 67 REMARK 465 GLN A 68 REMARK 465 ALA A 69 REMARK 465 GLU A 70 REMARK 465 GLN A 71 REMARK 465 GLU A 72 REMARK 465 SER A 73 REMARK 465 VAL A 74 REMARK 465 ASN A 75 REMARK 465 LYS A 76 REMARK 465 ALA A 77 REMARK 465 MET A 78 REMARK 465 VAL A 79 REMARK 465 ASP A 80 REMARK 465 VAL A 81 REMARK 465 GLU A 82 REMARK 465 THR A 83 REMARK 465 ALA A 84 REMARK 465 ARG A 85 REMARK 465 ASP A 86 REMARK 465 ASN A 87 REMARK 465 ALA A 88 REMARK 465 ALA A 89 REMARK 465 ALA A 90 REMARK 465 ALA A 91 REMARK 465 GLU A 92 REMARK 465 ASP A 93 REMARK 465 ASP A 94 REMARK 465 LEU A 95 REMARK 465 GLU A 96 REMARK 465 VAL A 97 REMARK 465 SER A 98 REMARK 465 GLN A 99 REMARK 465 ARG A 100 REMARK 465 ALA A 101 REMARK 465 VAL A 102 REMARK 465 LYS A 103 REMARK 465 ASP A 104 REMARK 465 ALA A 105 REMARK 465 ASN A 106 REMARK 465 ALA A 107 REMARK 465 ALA A 108 REMARK 465 ILE A 109 REMARK 465 ALA A 110 REMARK 465 ALA A 111 REMARK 465 ALA A 112 REMARK 465 GLN A 113 REMARK 465 HIS A 114 REMARK 465 ARG A 115 REMARK 465 PHE A 116 REMARK 465 ASP A 117 REMARK 465 THR A 118 REMARK 465 PHE A 119 REMARK 465 ALA A 120 REMARK 465 ALA A 121 REMARK 465 ALA A 122 REMARK 465 THR A 123 REMARK 465 TYR A 124 REMARK 465 MET A 125 REMARK 465 ASN A 126 REMARK 465 GLY A 127 REMARK 465 PRO A 128 REMARK 465 SER A 129 REMARK 465 VAL A 130 REMARK 465 SER A 131 REMARK 465 TYR A 132 REMARK 465 LEU A 133 REMARK 465 SER A 134 REMARK 465 ALA A 135 REMARK 465 SER A 136 REMARK 465 SER A 137 REMARK 465 PRO A 138 REMARK 465 ASP A 139 REMARK 465 GLU A 140 REMARK 465 ILE A 141 REMARK 465 ILE A 142 REMARK 465 ALA A 143 REMARK 465 THR A 144 REMARK 465 VAL A 145 REMARK 465 THR A 146 REMARK 465 ALA A 147 REMARK 465 ALA A 148 REMARK 465 LYS A 149 REMARK 465 THR A 150 REMARK 465 LEU A 151 REMARK 465 SER A 152 REMARK 465 ALA A 153 REMARK 465 SER A 154 REMARK 465 SER A 155 REMARK 465 GLN A 156 REMARK 465 ALA A 157 REMARK 465 VAL A 158 REMARK 465 MET A 159 REMARK 465 ALA A 160 REMARK 465 ASN A 161 REMARK 465 LEU A 162 REMARK 465 GLN A 163 REMARK 465 ARG A 164 REMARK 465 ALA A 165 REMARK 465 ARG A 166 REMARK 465 THR A 167 REMARK 465 GLU A 168 REMARK 465 ARG A 169 REMARK 465 VAL A 170 REMARK 465 ASN A 171 REMARK 465 THR A 172 REMARK 465 GLU A 173 REMARK 465 SER A 174 REMARK 465 ALA A 175 REMARK 465 ALA A 176 REMARK 465 ARG A 177 REMARK 465 LEU A 178 REMARK 465 ALA A 179 REMARK 465 LYS A 180 REMARK 465 GLN A 181 REMARK 465 LYS A 182 REMARK 465 ALA A 183 REMARK 465 ASP A 184 REMARK 465 LYS A 185 REMARK 465 ALA A 186 REMARK 465 ALA A 187 REMARK 465 ALA A 188 REMARK 465 ASP A 189 REMARK 465 ALA A 190 REMARK 465 LYS A 191 REMARK 465 ALA A 192 REMARK 465 SER A 193 REMARK 465 GLN A 194 REMARK 465 ASP A 195 REMARK 465 ALA A 196 REMARK 465 ALA A 197 REMARK 465 VAL A 198 REMARK 465 ALA A 199 REMARK 465 ALA A 200 REMARK 465 LEU A 201 REMARK 465 THR A 202 REMARK 465 GLU A 203 REMARK 465 THR A 204 REMARK 465 ARG A 205 REMARK 465 ARG A 206 REMARK 465 LYS A 207 REMARK 465 PHE A 208 REMARK 465 ASP A 209 REMARK 465 GLU A 210 REMARK 465 GLN A 211 REMARK 465 ARG A 212 REMARK 465 GLU A 213 REMARK 465 GLU A 214 REMARK 465 VAL A 215 REMARK 465 GLN A 216 REMARK 465 ARG A 217 REMARK 465 LEU A 218 REMARK 465 ALA A 219 REMARK 465 ALA A 220 REMARK 465 GLU A 221 REMARK 465 ARG A 222 REMARK 465 ASP A 223 REMARK 465 ALA A 224 REMARK 465 ALA A 225 REMARK 465 GLN A 226 REMARK 465 ALA A 227 REMARK 465 ARG A 228 REMARK 465 LEU A 229 REMARK 465 GLN A 230 REMARK 465 ALA A 231 REMARK 465 ALA A 232 REMARK 465 ARG A 233 REMARK 465 LEU A 234 REMARK 465 VAL A 235 REMARK 465 ALA A 236 REMARK 465 TRP A 237 REMARK 465 SER A 238 REMARK 465 SER A 239 REMARK 465 GLU A 240 REMARK 465 GLY A 241 REMARK 465 GLY A 242 REMARK 465 GLN A 243 REMARK 465 GLY A 244 REMARK 465 ALA A 245 REMARK 465 PRO A 246 REMARK 465 PRO A 247 REMARK 465 PHE A 248 REMARK 465 ARG A 249 REMARK 465 MET A 250 REMARK 465 TRP A 251 REMARK 465 ASP A 252 REMARK 465 PRO A 253 REMARK 465 GLY A 254 REMARK 465 SER A 255 REMARK 465 GLY A 256 REMARK 465 PRO A 257 REMARK 465 ALA A 258 REMARK 465 GLY A 259 REMARK 465 GLY A 260 REMARK 465 ARG A 261 REMARK 465 ALA A 262 REMARK 465 TRP A 263 REMARK 465 ASP A 264 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 744 O HOH A 844 2.11 REMARK 500 O HOH A 763 O HOH A 839 2.13 REMARK 500 CB ASP A 447 O HOH A 852 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 383 CA CYS A 383 CB -0.080 REMARK 500 CYS A 383 CB CYS A 383 SG -0.333 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 306 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 333 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 447 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 447 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 373 -124.17 49.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Q4N RELATED DB: PDB REMARK 900 RELATED ID: 4Q4G RELATED DB: PDB DBREF 4Q4T A 1 472 UNP O53168 RIPA_MYCTU 1 472 SEQADV 4Q4T ALA A 444 UNP O53168 GLU 444 ENGINEERED MUTATION SEQRES 1 A 472 MET ARG ARG ASN ARG ARG GLY SER PRO ALA ARG PRO ALA SEQRES 2 A 472 ALA ARG PHE VAL ARG PRO ALA ILE PRO SER ALA LEU SER SEQRES 3 A 472 VAL ALA LEU LEU VAL CYS THR PRO GLY LEU ALA THR ALA SEQRES 4 A 472 ASP PRO GLN THR ASP THR ILE ALA ALA LEU ILE ALA ASP SEQRES 5 A 472 VAL ALA LYS ALA ASN GLN ARG LEU GLN ASP LEU SER ASP SEQRES 6 A 472 GLU VAL GLN ALA GLU GLN GLU SER VAL ASN LYS ALA MET SEQRES 7 A 472 VAL ASP VAL GLU THR ALA ARG ASP ASN ALA ALA ALA ALA SEQRES 8 A 472 GLU ASP ASP LEU GLU VAL SER GLN ARG ALA VAL LYS ASP SEQRES 9 A 472 ALA ASN ALA ALA ILE ALA ALA ALA GLN HIS ARG PHE ASP SEQRES 10 A 472 THR PHE ALA ALA ALA THR TYR MET ASN GLY PRO SER VAL SEQRES 11 A 472 SER TYR LEU SER ALA SER SER PRO ASP GLU ILE ILE ALA SEQRES 12 A 472 THR VAL THR ALA ALA LYS THR LEU SER ALA SER SER GLN SEQRES 13 A 472 ALA VAL MET ALA ASN LEU GLN ARG ALA ARG THR GLU ARG SEQRES 14 A 472 VAL ASN THR GLU SER ALA ALA ARG LEU ALA LYS GLN LYS SEQRES 15 A 472 ALA ASP LYS ALA ALA ALA ASP ALA LYS ALA SER GLN ASP SEQRES 16 A 472 ALA ALA VAL ALA ALA LEU THR GLU THR ARG ARG LYS PHE SEQRES 17 A 472 ASP GLU GLN ARG GLU GLU VAL GLN ARG LEU ALA ALA GLU SEQRES 18 A 472 ARG ASP ALA ALA GLN ALA ARG LEU GLN ALA ALA ARG LEU SEQRES 19 A 472 VAL ALA TRP SER SER GLU GLY GLY GLN GLY ALA PRO PRO SEQRES 20 A 472 PHE ARG MET TRP ASP PRO GLY SER GLY PRO ALA GLY GLY SEQRES 21 A 472 ARG ALA TRP ASP GLY LEU TRP ASP PRO THR LEU PRO MET SEQRES 22 A 472 ILE PRO SER ALA ASN ILE PRO GLY ASP PRO ILE ALA VAL SEQRES 23 A 472 VAL ASN GLN VAL LEU GLY ILE SER ALA THR SER ALA GLN SEQRES 24 A 472 VAL THR ALA ASN MET GLY ARG LYS PHE LEU GLU GLN LEU SEQRES 25 A 472 GLY ILE LEU GLN PRO THR ASP THR GLY ILE THR ASN ALA SEQRES 26 A 472 PRO ALA GLY SER ALA GLN GLY ARG ILE PRO ARG VAL TYR SEQRES 27 A 472 GLY ARG GLN ALA SER GLU TYR VAL ILE ARG ARG GLY MET SEQRES 28 A 472 SER GLN ILE GLY VAL PRO TYR SER TRP GLY GLY GLY ASN SEQRES 29 A 472 ALA ALA GLY PRO SER LYS GLY ILE ASP SER GLY ALA GLY SEQRES 30 A 472 THR VAL GLY PHE ASP CYS SER GLY LEU VAL LEU TYR SER SEQRES 31 A 472 PHE ALA GLY VAL GLY ILE LYS LEU PRO HIS TYR SER GLY SEQRES 32 A 472 SER GLN TYR ASN LEU GLY ARG LYS ILE PRO SER SER GLN SEQRES 33 A 472 MET ARG ARG GLY ASP VAL ILE PHE TYR GLY PRO ASN GLY SEQRES 34 A 472 SER GLN HIS VAL THR ILE TYR LEU GLY ASN GLY GLN MET SEQRES 35 A 472 LEU ALA ALA PRO ASP VAL GLY LEU LYS VAL ARG VAL ALA SEQRES 36 A 472 PRO VAL ARG THR ALA GLY MET THR PRO TYR VAL VAL ARG SEQRES 37 A 472 TYR ILE GLU TYR HET FMT A 501 3 HET FMT A 502 3 HET GOL A 503 6 HET GOL A 504 6 HETNAM FMT FORMIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FMT 2(C H2 O2) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 HOH *259(H2 O) HELIX 1 1 SER A 297 LEU A 312 1 16 HELIX 2 2 PRO A 335 VAL A 337 5 3 HELIX 3 3 TYR A 338 SER A 352 1 15 HELIX 4 4 ILE A 372 ALA A 376 5 5 HELIX 5 5 ASP A 382 GLY A 393 1 12 HELIX 6 6 TYR A 401 TYR A 406 1 6 HELIX 7 7 SER A 415 MET A 417 5 3 HELIX 8 8 GLY A 426 SER A 430 5 5 SHEET 1 A 2 ILE A 284 ASN A 288 0 SHEET 2 A 2 ILE A 293 THR A 296 -1 O ILE A 293 N ASN A 288 SHEET 1 B 2 SER A 369 LYS A 370 0 SHEET 2 B 2 VAL A 379 GLY A 380 -1 O GLY A 380 N SER A 369 SHEET 1 C 2 ARG A 410 PRO A 413 0 SHEET 2 C 2 TYR A 465 ARG A 468 -1 O VAL A 466 N ILE A 412 SHEET 1 D 4 VAL A 422 TYR A 425 0 SHEET 2 D 4 HIS A 432 GLY A 438 -1 O THR A 434 N ILE A 423 SHEET 3 D 4 GLN A 441 ALA A 444 -1 O GLN A 441 N LEU A 437 SHEET 4 D 4 ARG A 453 PRO A 456 -1 O ALA A 455 N MET A 442 SITE 1 AC1 5 HIS A 432 ALA A 444 ARG A 453 ALA A 455 SITE 2 AC1 5 ARG A 458 SITE 1 AC2 7 SER A 276 CYS A 383 SER A 384 HIS A 432 SITE 2 AC2 7 VAL A 433 GOL A 503 HOH A 661 SITE 1 AC3 8 PRO A 272 TYR A 358 HIS A 432 PRO A 446 SITE 2 AC3 8 FMT A 502 HOH A 650 HOH A 661 HOH A 666 SITE 1 AC4 12 THR A 323 ALA A 325 GLN A 331 GLY A 332 SITE 2 AC4 12 ARG A 333 ILE A 334 TYR A 469 ILE A 470 SITE 3 AC4 12 GLU A 471 HOH A 659 HOH A 674 HOH A 724 CRYST1 36.711 65.270 68.195 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027240 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015321 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014664 0.00000