HEADER CALCIUM BINDING/STRUCTURAL PROTEIN 16-APR-14 4Q57 TITLE CRYSTAL STRUCTURE OF THE PLECTIN 1A ACTIN-BINDING DOMAIN/N-TERMINAL TITLE 2 DOMAIN OF CALMODULIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN (UNP RESIDUES 10-74); COMPND 5 SYNONYM: CAM; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PLECTIN; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: ACTIN-BINDING DOMAIN (UNP RESIDUES 23-263, SEE REMARK 999); COMPND 10 SYNONYM: PCN, PLTN, PLECTIN-1, PLECTIN-6 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: MOUSE; SOURCE 8 ORGANISM_TAXID: 10090 KEYWDS EF-HAND MOTIF, CALPONIN HOMOLOGY DOMAIN, CALCIUM BINDING-STRUCTURAL KEYWDS 2 PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.-G.SONG,J.KOSTAN,I.GRISHKOVSKAYA,K.DJINOVIC-CARUGO REVDAT 2 28-FEB-24 4Q57 1 REMARK SEQADV LINK REVDAT 1 23-JUL-14 4Q57 0 JRNL AUTH J.-G.SONG,J.KOSTAN,I.GRISHKOVSKAYA,K.DJINOVIC-CARUGO JRNL TITL CRYSTAL STRUCTURE OF THE PLECTIN 1A ACTIN-BINDING JRNL TITL 2 DOMAIN/N-TERMINAL DOMAIN OF CALMODULIN COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 31746 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1600 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.9468 - 4.0026 1.00 2938 150 0.1566 0.1860 REMARK 3 2 4.0026 - 3.1771 1.00 2826 150 0.1341 0.1764 REMARK 3 3 3.1771 - 2.7756 1.00 2766 163 0.1499 0.1734 REMARK 3 4 2.7756 - 2.5218 1.00 2731 168 0.1482 0.1868 REMARK 3 5 2.5218 - 2.3411 1.00 2734 156 0.1500 0.1859 REMARK 3 6 2.3411 - 2.2030 1.00 2757 144 0.1379 0.1670 REMARK 3 7 2.2030 - 2.0927 1.00 2723 150 0.1479 0.1982 REMARK 3 8 2.0927 - 2.0016 1.00 2739 143 0.1521 0.2114 REMARK 3 9 2.0016 - 1.9245 1.00 2750 119 0.1675 0.1940 REMARK 3 10 1.9245 - 1.8581 1.00 2737 126 0.1775 0.2295 REMARK 3 11 1.8581 - 1.8000 0.90 2445 131 0.2008 0.2202 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2621 REMARK 3 ANGLE : 0.963 3543 REMARK 3 CHIRALITY : 0.042 394 REMARK 3 PLANARITY : 0.005 466 REMARK 3 DIHEDRAL : 12.834 1005 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.8721 17.4003 6.4633 REMARK 3 T TENSOR REMARK 3 T11: 0.4739 T22: 0.2380 REMARK 3 T33: 0.2416 T12: 0.0057 REMARK 3 T13: -0.0139 T23: -0.0615 REMARK 3 L TENSOR REMARK 3 L11: 5.0230 L22: 7.4311 REMARK 3 L33: 2.0004 L12: -0.2057 REMARK 3 L13: -2.0758 L23: 1.0740 REMARK 3 S TENSOR REMARK 3 S11: 0.0113 S12: -0.6408 S13: 0.5859 REMARK 3 S21: 0.5414 S22: 0.0408 S23: -0.0469 REMARK 3 S31: -0.8797 S32: -0.0497 S33: -0.0237 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5259 12.7710 -5.1203 REMARK 3 T TENSOR REMARK 3 T11: 0.2558 T22: 0.1626 REMARK 3 T33: 0.2130 T12: 0.0207 REMARK 3 T13: -0.0476 T23: 0.0219 REMARK 3 L TENSOR REMARK 3 L11: 3.3356 L22: 2.6090 REMARK 3 L33: 3.1676 L12: 0.3257 REMARK 3 L13: -2.2557 L23: -0.2435 REMARK 3 S TENSOR REMARK 3 S11: 0.0183 S12: -0.0019 S13: 0.0229 REMARK 3 S21: -0.2580 S22: -0.1284 S23: 0.1497 REMARK 3 S31: -0.3946 S32: -0.0150 S33: 0.1164 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.2796 9.9945 -7.8213 REMARK 3 T TENSOR REMARK 3 T11: 0.3877 T22: 0.3756 REMARK 3 T33: 0.4218 T12: 0.0180 REMARK 3 T13: 0.0775 T23: 0.1245 REMARK 3 L TENSOR REMARK 3 L11: 1.5794 L22: 3.3824 REMARK 3 L33: 2.4442 L12: 1.7885 REMARK 3 L13: 1.1458 L23: 2.7702 REMARK 3 S TENSOR REMARK 3 S11: -0.1347 S12: -0.0395 S13: -0.2962 REMARK 3 S21: -0.0259 S22: -0.2256 S23: -0.8010 REMARK 3 S31: 0.0230 S32: 0.5747 S33: 0.2633 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.3726 1.7458 -2.9862 REMARK 3 T TENSOR REMARK 3 T11: 0.2752 T22: 0.1025 REMARK 3 T33: 0.2650 T12: 0.0185 REMARK 3 T13: -0.0386 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: 4.5016 L22: 4.5350 REMARK 3 L33: 7.7769 L12: 1.2605 REMARK 3 L13: -3.7317 L23: -1.6804 REMARK 3 S TENSOR REMARK 3 S11: 0.0150 S12: 0.0289 S13: 0.1158 REMARK 3 S21: -0.6220 S22: -0.0937 S23: -0.2829 REMARK 3 S31: 0.3764 S32: 0.0698 S33: 0.0670 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.4243 5.6827 5.6961 REMARK 3 T TENSOR REMARK 3 T11: 0.1461 T22: 0.1629 REMARK 3 T33: 0.1409 T12: -0.0067 REMARK 3 T13: 0.0046 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 2.5325 L22: 3.8520 REMARK 3 L33: 3.0334 L12: -0.2566 REMARK 3 L13: -0.4820 L23: 0.3355 REMARK 3 S TENSOR REMARK 3 S11: 0.0313 S12: -0.3522 S13: -0.0760 REMARK 3 S21: 0.1441 S22: -0.0916 S23: 0.2939 REMARK 3 S31: 0.0364 S32: -0.3810 S33: 0.0469 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -3 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.4175 27.8550 8.9188 REMARK 3 T TENSOR REMARK 3 T11: 0.1376 T22: 0.1418 REMARK 3 T33: 0.1113 T12: 0.0215 REMARK 3 T13: -0.0200 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.4338 L22: 5.8374 REMARK 3 L33: 0.6163 L12: 1.0501 REMARK 3 L13: 0.2139 L23: 1.4538 REMARK 3 S TENSOR REMARK 3 S11: 0.0744 S12: 0.0216 S13: -0.1016 REMARK 3 S21: 0.0205 S22: -0.1025 S23: -0.1763 REMARK 3 S31: 0.1141 S32: 0.0028 S33: 0.0323 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 60 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.2283 37.5029 25.4678 REMARK 3 T TENSOR REMARK 3 T11: 0.0641 T22: 0.0671 REMARK 3 T33: 0.0623 T12: -0.0037 REMARK 3 T13: -0.0054 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.1774 L22: 1.9208 REMARK 3 L33: 1.8707 L12: -0.3399 REMARK 3 L13: 0.1499 L23: -0.1563 REMARK 3 S TENSOR REMARK 3 S11: 0.0125 S12: -0.0391 S13: -0.0238 REMARK 3 S21: -0.0055 S22: -0.0400 S23: 0.0061 REMARK 3 S31: -0.0902 S32: 0.0379 S33: 0.0189 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 145 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.9754 43.5961 8.6848 REMARK 3 T TENSOR REMARK 3 T11: 0.1077 T22: 0.2957 REMARK 3 T33: 0.1759 T12: 0.0158 REMARK 3 T13: 0.0259 T23: 0.0276 REMARK 3 L TENSOR REMARK 3 L11: 2.3820 L22: 3.4849 REMARK 3 L33: 1.4104 L12: -0.2624 REMARK 3 L13: 0.1238 L23: -0.3055 REMARK 3 S TENSOR REMARK 3 S11: -0.0890 S12: -0.4129 S13: 0.0123 REMARK 3 S21: 0.3172 S22: 0.2034 S23: 0.3826 REMARK 3 S31: -0.0618 S32: -0.5755 S33: -0.0330 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 185 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.8213 46.2114 -0.4927 REMARK 3 T TENSOR REMARK 3 T11: 0.0601 T22: 0.0745 REMARK 3 T33: 0.0818 T12: -0.0121 REMARK 3 T13: -0.0228 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 1.2428 L22: 1.6830 REMARK 3 L33: 1.9029 L12: -0.3814 REMARK 3 L13: 0.7319 L23: -0.3462 REMARK 3 S TENSOR REMARK 3 S11: -0.0667 S12: -0.0455 S13: 0.1152 REMARK 3 S21: 0.0448 S22: 0.0014 S23: -0.0736 REMARK 3 S31: -0.0831 S32: -0.0247 S33: 0.0488 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Q57 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085618. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMOND(001) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31749 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 48.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.50300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS, PH 6.5, 0.2 M REMARK 280 MAGNESIUM CHLORIDE, 13% PEG8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.54000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.65000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.68950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.65000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.54000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.68950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 713 O HOH B 759 2.03 REMARK 500 OD1 ASP B 237 O HOH B 681 2.03 REMARK 500 O HOH B 718 O HOH B 767 2.06 REMARK 500 O HOH B 678 O HOH B 712 2.06 REMARK 500 O HOH A 224 O HOH A 244 2.13 REMARK 500 O HOH B 712 O HOH B 717 2.14 REMARK 500 O HOH B 554 O HOH B 713 2.15 REMARK 500 O HOH B 596 O HOH B 712 2.18 REMARK 500 O HOH B 744 O HOH B 761 2.19 REMARK 500 O HOH B 716 O HOH B 767 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 227 O HOH B 712 4565 2.11 REMARK 500 O HOH B 622 O HOH B 712 4565 2.12 REMARK 500 O HOH B 620 O HOH B 639 2665 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 157 33.99 -96.74 REMARK 500 THR B 184 -94.86 -130.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 20 OD1 REMARK 620 2 ASP A 22 OD1 84.7 REMARK 620 3 ASP A 24 OD1 87.9 80.9 REMARK 620 4 THR A 26 O 85.5 164.9 87.3 REMARK 620 5 GLU A 31 OE2 94.2 84.5 165.0 107.7 REMARK 620 6 GLU A 31 OE1 124.6 122.3 138.8 72.7 49.4 REMARK 620 7 HOH A 204 O 166.2 86.9 80.0 100.3 95.8 69.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 56 OD1 REMARK 620 2 ASP A 58 OD1 82.2 REMARK 620 3 ASN A 60 OD1 89.8 77.7 REMARK 620 4 THR A 62 O 86.7 151.2 75.7 REMARK 620 5 GLU A 67 OE1 102.7 126.7 153.5 81.7 REMARK 620 6 GLU A 67 OE2 92.5 73.6 150.6 133.7 53.3 REMARK 620 7 HOH A 239 O 167.5 85.3 87.4 104.3 84.9 84.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 122 OD1 REMARK 620 2 ASP B 123 OD1 82.3 REMARK 620 3 HOH B 601 O 81.6 96.5 REMARK 620 4 HOH B 602 O 92.7 170.1 91.2 REMARK 620 5 HOH B 604 O 98.5 88.9 174.6 83.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Q58 RELATED DB: PDB REMARK 900 RELATED ID: 4Q59 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 PROTEIN IS ISOFORM PLEC-1A (Q9QXS1-3) OF MUS MUSCULUS PLECTIN. DBREF 4Q57 A 9 73 UNP P62158 CALM_HUMAN 10 74 DBREF 4Q57 B 23 263 UNP Q9QXS1 PLEC_MOUSE 23 263 SEQADV 4Q57 GLY B -3 UNP Q9QXS1 EXPRESSION TAG SEQADV 4Q57 PRO B -2 UNP Q9QXS1 EXPRESSION TAG SEQADV 4Q57 MET B -1 UNP Q9QXS1 EXPRESSION TAG SEQRES 1 A 65 ILE ALA GLU PHE LYS GLU ALA PHE SER LEU PHE ASP LYS SEQRES 2 A 65 ASP GLY ASP GLY THR ILE THR THR LYS GLU LEU GLY THR SEQRES 3 A 65 VAL MET ARG SER LEU GLY GLN ASN PRO THR GLU ALA GLU SEQRES 4 A 65 LEU GLN ASP MET ILE ASN GLU VAL ASP ALA ASP GLY ASN SEQRES 5 A 65 GLY THR ILE ASP PHE PRO GLU PHE LEU THR MET MET ALA SEQRES 1 B 244 GLY PRO MET ASP ASN LEU TYR LEU ALA VAL LEU ARG ALA SEQRES 2 B 244 SER GLU GLY LYS LYS ASP GLU ARG ASP ARG VAL GLN LYS SEQRES 3 B 244 LYS THR PHE THR LYS TRP VAL ASN LYS HIS LEU ILE LYS SEQRES 4 B 244 ALA GLN ARG HIS ILE SER ASP LEU TYR GLU ASP LEU ARG SEQRES 5 B 244 ASP GLY HIS ASN LEU ILE SER LEU LEU GLU VAL LEU SER SEQRES 6 B 244 GLY ASP SER LEU PRO ARG GLU LYS GLY ARG MET ARG PHE SEQRES 7 B 244 HIS LYS LEU GLN ASN VAL GLN ILE ALA LEU ASP TYR LEU SEQRES 8 B 244 ARG HIS ARG GLN VAL LYS LEU VAL ASN ILE ARG ASN ASP SEQRES 9 B 244 ASP ILE ALA ASP GLY ASN PRO LYS LEU THR LEU GLY LEU SEQRES 10 B 244 ILE TRP THR ILE ILE LEU HIS PHE GLN ILE SER ASP ILE SEQRES 11 B 244 GLN VAL SER GLY GLN SER GLU ASP MET THR ALA LYS GLU SEQRES 12 B 244 LYS LEU LEU LEU TRP SER GLN ARG MET VAL GLU GLY TYR SEQRES 13 B 244 GLN GLY LEU ARG CYS ASP ASN PHE THR THR SER TRP ARG SEQRES 14 B 244 ASP GLY ARG LEU PHE ASN ALA ILE ILE HIS ARG HIS LYS SEQRES 15 B 244 PRO MET LEU ILE ASP MET ASN LYS VAL TYR ARG GLN THR SEQRES 16 B 244 ASN LEU GLU ASN LEU ASP GLN ALA PHE SER VAL ALA GLU SEQRES 17 B 244 ARG ASP LEU GLY VAL THR ARG LEU LEU ASP PRO GLU ASP SEQRES 18 B 244 VAL ASP VAL PRO GLN PRO ASP GLU LYS SER ILE ILE THR SEQRES 19 B 244 TYR VAL SER SER LEU TYR ASP ALA MET PRO HET CA A 101 1 HET CA A 102 1 HET MG B 301 1 HET CL B 302 1 HET EDO B 303 4 HET EDO B 304 4 HET EDO B 305 4 HET GOL B 306 6 HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CA 2(CA 2+) FORMUL 5 MG MG 2+ FORMUL 6 CL CL 1- FORMUL 7 EDO 3(C2 H6 O2) FORMUL 10 GOL C3 H8 O3 FORMUL 11 HOH *427(H2 O) HELIX 1 1 ILE A 9 ASP A 20 1 12 HELIX 2 2 THR A 28 LEU A 39 1 12 HELIX 3 3 THR A 44 ASP A 56 1 13 HELIX 4 4 PHE A 65 ALA A 73 1 9 HELIX 5 5 ASP B 23 ILE B 57 1 35 HELIX 6 6 LYS B 58 GLN B 60 5 3 HELIX 7 7 GLY B 73 GLY B 85 1 13 HELIX 8 8 MET B 95 ARG B 113 1 19 HELIX 9 9 ARG B 121 ASP B 127 1 7 HELIX 10 10 ASN B 129 GLN B 145 1 17 HELIX 11 11 ILE B 146 ILE B 149 5 4 HELIX 12 12 THR B 159 VAL B 172 1 14 HELIX 13 13 THR B 184 ARG B 188 5 5 HELIX 14 14 GLY B 190 LYS B 201 1 12 HELIX 15 15 PRO B 202 ILE B 205 5 4 HELIX 16 16 ASP B 206 GLN B 213 1 8 HELIX 17 17 THR B 214 GLY B 231 1 18 HELIX 18 18 ASP B 237 ASP B 242 1 6 HELIX 19 19 ASP B 247 ALA B 261 1 15 SHEET 1 A 2 THR A 26 ILE A 27 0 SHEET 2 A 2 ILE A 63 ASP A 64 -1 O ILE A 63 N ILE A 27 LINK OD1 ASP A 20 CA CA A 101 1555 1555 2.22 LINK OD1 ASP A 22 CA CA A 101 1555 1555 2.26 LINK OD1 ASP A 24 CA CA A 101 1555 1555 2.31 LINK O THR A 26 CA CA A 101 1555 1555 2.22 LINK OE2 GLU A 31 CA CA A 101 1555 1555 2.19 LINK OE1 GLU A 31 CA CA A 101 1555 1555 2.85 LINK OD1 ASP A 56 CA CA A 102 1555 1555 2.29 LINK OD1 ASP A 58 CA CA A 102 1555 1555 2.37 LINK OD1 ASN A 60 CA CA A 102 1555 1555 2.46 LINK O THR A 62 CA CA A 102 1555 1555 2.34 LINK OE1 GLU A 67 CA CA A 102 1555 1555 2.41 LINK OE2 GLU A 67 CA CA A 102 1555 1555 2.51 LINK CA CA A 101 O HOH A 204 1555 1555 2.29 LINK CA CA A 102 O HOH A 239 1555 1555 2.42 LINK OD1 ASN B 122 MG MG B 301 1555 1555 2.14 LINK OD1 ASP B 123 MG MG B 301 1555 1555 2.06 LINK MG MG B 301 O HOH B 601 1555 1555 2.09 LINK MG MG B 301 O HOH B 602 1555 1555 2.10 LINK MG MG B 301 O HOH B 604 1555 1555 2.07 SITE 1 AC1 6 ASP A 20 ASP A 22 ASP A 24 THR A 26 SITE 2 AC1 6 GLU A 31 HOH A 204 SITE 1 AC2 6 ASP A 56 ASP A 58 ASN A 60 THR A 62 SITE 2 AC2 6 GLU A 67 HOH A 239 SITE 1 AC3 6 ASN B 122 ASP B 123 HOH B 601 HOH B 602 SITE 2 AC3 6 HOH B 604 HOH B 605 SITE 1 AC4 1 ASN B 215 SITE 1 AC5 3 HIS B 55 LYS B 58 VAL B 82 SITE 1 AC6 3 GLN B 169 CYS B 180 HOH B 470 SITE 1 AC7 2 ARG B 170 HOH B 711 SITE 1 AC8 5 ASN B 119 ARG B 212 GLU B 217 HOH B 445 SITE 2 AC8 5 HOH B 520 CRYST1 59.080 65.379 87.300 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016926 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015295 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011455 0.00000